YVU
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | C | sing | 1.38Å | 1.33Å | |
N3 | C3 | sing | 1.35Å | 1.39Å | Aromatic |
N3 | C4 | doub | 1.30Å | 1.31Å | Aromatic |
C | C3 | sing | 1.41Å | 1.41Å | Aromatic |
C | N1 | doub | 1.33Å | 1.35Å | Aromatic |
C3 | C2 | doub | 1.41Å | 1.39Å | Aromatic |
C4 | N4 | sing | 1.36Å | 1.37Å | Aromatic |
N1 | C1 | sing | 1.32Å | 1.34Å | Aromatic |
C2 | N4 | sing | 1.37Å | 1.38Å | Aromatic |
C2 | N2 | sing | 1.33Å | 1.34Å | Aromatic |
N4 | C5 | sing | 1.46Å | 1.46Å | |
C7 | S | sing | 1.81Å | 1.79Å | |
C7 | C6 | sing | 1.53Å | 1.52Å | |
C1 | N2 | doub | 1.32Å | 1.34Å | Aromatic |
O | C5 | sing | 1.44Å | 1.41Å | |
O | C6 | sing | 1.44Å | 1.44Å | |
C16 | C15 | doub | 1.38Å | 1.38Å | Aromatic |
C16 | C17 | sing | 1.38Å | 1.39Å | Aromatic |
S | C8 | sing | 1.81Å | 1.82Å | |
C5 | C19 | sing | 1.55Å | 1.53Å | |
C6 | C18 | sing | 1.54Å | 1.53Å | |
C15 | C14 | sing | 1.38Å | 1.38Å | Aromatic |
C8 | C9 | sing | 1.53Å | 1.52Å | |
C19 | C18 | sing | 1.55Å | 1.54Å | |
C19 | O3 | sing | 1.43Å | 1.43Å | |
C17 | C12 | doub | 1.38Å | 1.39Å | Aromatic |
C18 | O2 | sing | 1.43Å | 1.42Å | |
C14 | C13 | doub | 1.38Å | 1.38Å | Aromatic |
C9 | N5 | sing | 1.46Å | 1.46Å | |
N5 | C10 | sing | 1.35Å | 1.35Å | |
C12 | C13 | sing | 1.38Å | 1.39Å | Aromatic |
C12 | C11 | sing | 1.51Å | 1.51Å | |
C10 | N6 | sing | 1.35Å | 1.35Å | |
C10 | O1 | doub | 1.22Å | 1.23Å | |
N6 | C11 | sing | 1.46Å | 1.45Å | |
C7 | H1 | sing | 1.09Å | 1.10Å | |
C7 | H2 | sing | 1.09Å | 1.10Å | |
C8 | H3 | sing | 1.09Å | 1.10Å | |
C8 | H4 | sing | 1.09Å | 1.10Å | |
C9 | H5 | sing | 1.09Å | 1.10Å | |
C9 | H6 | sing | 1.09Å | 1.10Å | |
C1 | H7 | sing | 1.08Å | 1.08Å | |
C5 | H8 | sing | 1.09Å | 1.10Å | |
C6 | H9 | sing | 1.09Å | 1.10Å | |
C4 | H10 | sing | 1.08Å | 1.08Å | |
O3 | H11 | sing | 0.97Å | 0.95Å | |
N6 | H12 | sing | 0.97Å | 1.00Å | |
C11 | H13 | sing | 1.09Å | 1.10Å | |
C11 | H14 | sing | 1.09Å | 1.10Å | |
C17 | H15 | sing | 1.08Å | 1.08Å | |
C16 | H16 | sing | 1.08Å | 1.08Å | |
C15 | H17 | sing | 1.08Å | 1.08Å | |
C14 | H18 | sing | 1.08Å | 1.08Å | |
C13 | H19 | sing | 1.08Å | 1.08Å | |
N5 | H20 | sing | 0.97Å | 1.00Å | |
C18 | H21 | sing | 1.09Å | 1.10Å | |
O2 | H22 | sing | 0.97Å | 0.95Å | |
C19 | H23 | sing | 1.09Å | 1.10Å | |
N | H24 | sing | 0.97Å | 1.00Å | |
N | H25 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N | C | C3 | 124.0° | 120.7° |
N | C | N1 | 118.2° | 120.8° |
C | N | H24 | 109.5° | 120.0° |
C | N | H25 | 109.5° | 119.9° |
C3 | N3 | C4 | 103.8° | 109.4° |
N3 | C3 | C | 132.5° | 134.7° |
N3 | C3 | C2 | 110.7° | 107.1° |
N3 | C4 | N4 | 114.1° | 110.0° |
N3 | C4 | H10 | 122.9° | 125.0° |
C3 | C | N1 | 117.8° | 118.5° |
C | C3 | C2 | 116.9° | 118.2° |
C | N1 | C1 | 118.7° | 121.2° |
C3 | C2 | N4 | 105.7° | 106.0° |
C3 | C2 | N2 | 126.5° | 119.1° |
C4 | N4 | C2 | 105.7° | 107.4° |
C4 | N4 | C5 | 125.7° | 126.3° |
N4 | C4 | H10 | 122.9° | 125.0° |
N1 | C1 | N2 | 129.0° | 122.5° |
N1 | C1 | H7 | 115.5° | 118.7° |
N4 | C2 | N2 | 127.8° | 134.9° |
C2 | N4 | C5 | 128.3° | 126.3° |
C2 | N2 | C1 | 111.2° | 120.6° |
N4 | C5 | O | 107.5° | 110.7° |
N4 | C5 | C19 | 115.5° | 110.6° |
N4 | C5 | H8 | 109.7° | 110.5° |
S | C7 | C6 | 111.6° | 109.5° |
C7 | S | C8 | 102.5° | 103.0° |
S | C7 | H1 | 109.0° | 109.4° |
S | C7 | H2 | 108.9° | 109.5° |
C7 | C6 | O | 104.0° | 109.9° |
C7 | C6 | C18 | 114.2° | 109.9° |
C6 | C7 | H1 | 108.9° | 109.5° |
C6 | C7 | H2 | 108.9° | 109.5° |
C7 | C6 | H9 | 110.3° | 109.9° |
N2 | C1 | H7 | 115.5° | 118.8° |
C5 | O | C6 | 108.5° | 106.9° |
O | C5 | C19 | 104.8° | 103.5° |
O | C5 | H8 | 110.4° | 110.7° |
O | C6 | C18 | 106.9° | 107.3° |
O | C6 | H9 | 111.3° | 110.0° |
C15 | C16 | C17 | 120.3° | 120.0° |
C16 | C15 | C14 | 119.6° | 120.0° |
C15 | C16 | H16 | 119.9° | 120.0° |
C16 | C15 | H17 | 120.2° | 120.0° |
C16 | C17 | C12 | 120.6° | 120.0° |
C16 | C17 | H15 | 119.7° | 120.0° |
C17 | C16 | H16 | 119.9° | 120.0° |
S | C8 | C9 | 113.7° | 109.5° |
S | C8 | H3 | 108.4° | 109.5° |
S | C8 | H4 | 108.4° | 109.5° |
C5 | C19 | C18 | 101.4° | 102.1° |
C5 | C19 | O3 | 114.0° | 111.0° |
C19 | C5 | H8 | 108.8° | 110.6° |
C5 | C19 | H23 | 109.2° | 110.9° |
C6 | C18 | C19 | 103.6° | 104.2° |
C6 | C18 | O2 | 112.9° | 110.5° |
C18 | C6 | H9 | 110.0° | 109.8° |
C6 | C18 | H21 | 108.4° | 110.4° |
C15 | C14 | C13 | 120.2° | 120.0° |
C14 | C15 | H17 | 120.2° | 120.0° |
C15 | C14 | H18 | 119.9° | 120.0° |
C8 | C9 | N5 | 112.0° | 109.5° |
C9 | C8 | H3 | 108.4° | 109.5° |
C9 | C8 | H4 | 108.4° | 109.5° |
C8 | C9 | H5 | 108.8° | 109.4° |
C8 | C9 | H6 | 108.8° | 109.4° |
C18 | C19 | O3 | 112.2° | 110.9° |
C19 | C18 | O2 | 113.3° | 110.5° |
C19 | C18 | H21 | 108.4° | 110.6° |
C18 | C19 | H23 | 109.0° | 110.9° |
C19 | O3 | H11 | 109.5° | 114.1° |
O3 | C19 | H23 | 110.6° | 110.9° |
C17 | C12 | C13 | 118.6° | 120.0° |
C17 | C12 | C11 | 121.3° | 120.0° |
C12 | C17 | H15 | 119.7° | 120.0° |
O2 | C18 | H21 | 109.9° | 110.4° |
C18 | O2 | H22 | 109.5° | 114.0° |
C14 | C13 | C12 | 120.7° | 120.0° |
C13 | C14 | H18 | 119.9° | 120.0° |
C14 | C13 | H19 | 119.6° | 119.9° |
C9 | N5 | C10 | 123.6° | 120.0° |
N5 | C9 | H5 | 108.8° | 109.5° |
N5 | C9 | H6 | 108.8° | 109.5° |
C9 | N5 | H20 | 118.2° | 120.0° |
N5 | C10 | N6 | 115.5° | 120.1° |
N5 | C10 | O1 | 123.4° | 119.9° |
C10 | N5 | H20 | 118.2° | 119.9° |
C13 | C12 | C11 | 119.9° | 120.0° |
C12 | C13 | H19 | 119.6° | 120.1° |
C12 | C11 | N6 | 115.5° | 109.5° |
C12 | C11 | H13 | 108.0° | 109.5° |
C12 | C11 | H14 | 107.9° | 109.5° |
N6 | C10 | O1 | 121.1° | 120.0° |
C10 | N6 | C11 | 120.0° | 120.0° |
C10 | N6 | H12 | 120.0° | 119.9° |
C11 | N6 | H12 | 120.0° | 120.0° |
N6 | C11 | H13 | 107.9° | 109.5° |
N6 | C11 | H14 | 107.9° | 109.5° |
H1 | C7 | H2 | 109.5° | 109.4° |
H3 | C8 | H4 | 109.4° | 109.5° |
H5 | C9 | H6 | 109.5° | 109.4° |
H13 | C11 | H14 | 109.5° | 109.4° |
H24 | N | H25 | 109.4° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N | C | C3 | N3 | 7.0° | 0.0° |
N | C | C3 | N1 | 175.6° | 180.0° |
N | C | C3 | C2 | 173.6° | 180.0° |
N | C | N1 | C1 | 173.2° | 180.0° |
C | N | H24 | H25 | 120.0° | 179.9° |
N3 | C3 | C | C2 | 179.4° | 179.9° |
N3 | C3 | C | N1 | 177.3° | 180.0° |
C3 | N3 | C4 | N4 | 1.5° | 0.0° |
N3 | C3 | C2 | N4 | 0.5° | 0.1° |
N3 | C3 | C2 | N2 | 179.7° | 180.0° |
C3 | N3 | C4 | H10 | 178.5° | 180.0° |
C4 | N3 | C3 | C | 180.0° | 180.0° |
C4 | N3 | C3 | C2 | 0.6° | 0.0° |
N3 | C4 | N4 | H10 | 180.0° | 180.0° |
N3 | C4 | N4 | C2 | 1.8° | 0.0° |
N3 | C4 | N4 | C5 | 171.6° | 180.0° |
C3 | C | N1 | C1 | 2.7° | 0.0° |
C | C3 | C2 | N4 | 179.1° | 180.0° |
C | C3 | C2 | N2 | 0.2° | 0.0° |
C3 | C | N | H24 | 175.7° | 0.1° |
C3 | C | N | H25 | 64.4° | 180.0° |
N1 | C | C3 | C2 | 2.1° | 0.0° |
C | N1 | C1 | N2 | 1.1° | 0.0° |
C | N1 | C1 | H7 | 178.9° | 180.0° |
N1 | C | N | H24 | 0.0° | 179.9° |
N1 | C | N | H25 | 120.0° | 0.0° |
C3 | C2 | N4 | C4 | 1.3° | 0.1° |
C3 | C2 | N4 | N2 | 179.3° | 179.9° |
C3 | C2 | N4 | C5 | 171.9° | 180.0° |
C3 | C2 | N2 | C1 | 1.7° | 0.1° |
C4 | N4 | C2 | C5 | 173.2° | 179.9° |
C4 | N4 | C2 | N2 | 179.4° | 180.0° |
C4 | N4 | C5 | O | 56.9° | 19.2° |
C4 | N4 | C5 | C19 | 59.6° | 95.0° |
C4 | N4 | C5 | H8 | 177.0° | 142.2° |
N1 | C1 | N2 | C2 | 1.0° | 0.0° |
N1 | C1 | N2 | H7 | 180.0° | 179.9° |
N4 | C2 | N2 | C1 | 177.4° | 180.0° |
C2 | N4 | C5 | O | 115.0° | 160.9° |
C2 | N4 | C5 | C19 | 128.4° | 84.9° |
C2 | N4 | C5 | H8 | 5.0° | 37.9° |
C2 | N4 | C4 | H10 | 178.2° | 180.0° |
N2 | C2 | N4 | C5 | 7.3° | 0.1° |
C2 | N2 | C1 | H7 | 178.9° | 180.0° |
N4 | C5 | O | C19 | 123.3° | 118.5° |
N4 | C5 | O | H8 | 119.6° | 122.9° |
N4 | C5 | O | C6 | 157.8° | 158.6° |
N4 | C5 | C19 | H8 | 123.8° | 122.8° |
N4 | C5 | C19 | C18 | 156.6° | 155.7° |
N4 | C5 | C19 | O3 | 82.6° | 86.1° |
C5 | N4 | C4 | H10 | 8.4° | 0.1° |
N4 | C5 | C19 | H23 | 41.6° | 37.5° |
S | C7 | C6 | H1 | 120.3° | 120.0° |
S | C7 | C6 | H2 | 120.3° | 120.1° |
S | C7 | C6 | O | 172.7° | 67.2° |
S | C7 | C6 | C18 | 71.2° | 175.0° |
C7 | S | C8 | C9 | 97.0° | 180.0° |
S | C7 | H1 | H2 | 119.1° | 120.0° |
C7 | S | C8 | H3 | 142.4° | 60.0° |
C7 | S | C8 | H4 | 23.7° | 60.0° |
S | C7 | C6 | H9 | 53.3° | 54.0° |
C7 | C6 | O | C5 | 136.8° | 146.0° |
C7 | C6 | O | C18 | 121.2° | 119.5° |
C7 | C6 | O | H9 | 118.7° | 121.1° |
C6 | C7 | S | C8 | 72.9° | 180.0° |
C7 | C6 | C18 | H9 | 124.6° | 121.0° |
C7 | C6 | C18 | C19 | 105.3° | 121.4° |
C7 | C6 | C18 | O2 | 131.7° | 119.8° |
C6 | C7 | H1 | H2 | 119.0° | 120.0° |
C7 | C6 | C18 | H21 | 9.7° | 2.7° |
O | C5 | C19 | H8 | 118.1° | 118.6° |
C5 | O | C6 | C18 | 15.7° | 26.5° |
O | C5 | C19 | C18 | 38.5° | 37.1° |
O | C5 | C19 | O3 | 159.3° | 155.2° |
C5 | O | C6 | H9 | 104.5° | 93.0° |
O | C5 | C19 | H23 | 76.4° | 81.1° |
C6 | O | C5 | C19 | 34.4° | 40.1° |
O | C6 | C18 | H9 | 121.0° | 119.5° |
O | C6 | C18 | C19 | 9.1° | 2.0° |
O | C6 | C18 | O2 | 113.8° | 120.7° |
O | C6 | C7 | H1 | 52.4° | 172.9° |
O | C6 | C7 | H2 | 67.0° | 52.9° |
C6 | O | C5 | H8 | 82.6° | 78.5° |
O | C6 | C18 | H21 | 124.2° | 116.8° |
C15 | C16 | C17 | H16 | 180.0° | 179.9° |
C16 | C15 | C14 | H17 | 180.0° | 179.9° |
C15 | C16 | C17 | C12 | 0.4° | 0.1° |
C16 | C15 | C14 | C13 | 1.2° | 0.1° |
C15 | C16 | C17 | H15 | 179.6° | 180.0° |
C16 | C15 | C14 | H18 | 178.8° | 180.0° |
C17 | C16 | C15 | C14 | 0.3° | 0.1° |
C16 | C17 | C12 | H15 | 180.0° | 179.9° |
C16 | C17 | C12 | C13 | 1.5° | 0.1° |
C16 | C17 | C12 | C11 | 173.1° | 179.7° |
C17 | C16 | C15 | H17 | 179.7° | 179.9° |
S | C8 | C9 | H3 | 120.6° | 120.0° |
S | C8 | C9 | H4 | 120.6° | 120.0° |
S | C8 | C9 | N5 | 174.5° | 180.0° |
C8 | S | C7 | H1 | 47.4° | 60.0° |
C8 | S | C7 | H2 | 166.8° | 59.9° |
S | C8 | H3 | H4 | 118.0° | 120.0° |
S | C8 | C9 | H5 | 54.1° | 60.0° |
S | C8 | C9 | H6 | 65.2° | 60.0° |
C5 | C19 | C18 | C6 | 28.1° | 20.9° |
C5 | C19 | C18 | O3 | 122.0° | 118.2° |
C5 | C19 | C18 | H23 | 115.1° | 118.2° |
C5 | C19 | O3 | H23 | 123.5° | 123.7° |
C5 | C19 | C18 | O2 | 94.7° | 97.8° |
C5 | C19 | O3 | H11 | 180.0° | 180.0° |
C5 | C19 | C18 | H21 | 143.1° | 139.6° |
C6 | C18 | C19 | O2 | 122.7° | 118.7° |
C6 | C18 | C19 | H21 | 115.1° | 118.7° |
C6 | C18 | C19 | O3 | 150.0° | 139.2° |
C6 | C18 | O2 | H21 | 121.2° | 122.5° |
C18 | C6 | C7 | H1 | 168.5° | 55.0° |
C18 | C6 | C7 | H2 | 49.1° | 65.0° |
C6 | C18 | O2 | H22 | 180.0° | 180.0° |
C6 | C18 | C19 | H23 | 87.0° | 97.3° |
C15 | C14 | C13 | H18 | 180.0° | 179.9° |
C15 | C14 | C13 | C12 | 2.3° | 0.1° |
C14 | C15 | C16 | H16 | 179.7° | 180.0° |
C15 | C14 | C13 | H19 | 177.7° | 179.8° |
C8 | C9 | N5 | H5 | 120.4° | 120.0° |
C8 | C9 | N5 | H6 | 120.4° | 120.0° |
C8 | C9 | N5 | C10 | 95.0° | 180.0° |
C9 | C8 | H3 | H4 | 118.1° | 120.0° |
C8 | C9 | H5 | H6 | 118.8° | 119.9° |
C8 | C9 | N5 | H20 | 85.0° | 0.0° |
C18 | C19 | O3 | H23 | 122.0° | 123.6° |
C19 | C18 | O2 | H21 | 121.4° | 122.7° |
C18 | C19 | C5 | H8 | 79.6° | 81.5° |
C19 | C18 | C6 | H9 | 130.1° | 117.6° |
C18 | C19 | O3 | H11 | 65.5° | 67.3° |
C19 | C18 | O2 | H22 | 62.6° | 65.2° |
O3 | C19 | C18 | O2 | 27.3° | 20.4° |
O3 | C19 | C5 | H8 | 41.2° | 36.6° |
O3 | C19 | C18 | H21 | 94.9° | 102.2° |
C17 | C12 | C13 | C14 | 2.4° | 0.1° |
C17 | C12 | C13 | C11 | 174.7° | 179.8° |
C17 | C12 | C11 | N6 | 14.1° | 89.8° |
C17 | C12 | C11 | H13 | 135.0° | 150.2° |
C17 | C12 | C11 | H14 | 106.7° | 30.2° |
C12 | C17 | C16 | H16 | 179.6° | 180.0° |
C17 | C12 | C13 | H19 | 177.6° | 179.8° |
O2 | C18 | C6 | H9 | 7.1° | 1.2° |
O2 | C18 | C19 | H23 | 150.2° | 144.0° |
C14 | C13 | C12 | H19 | 180.0° | 179.6° |
C14 | C13 | C12 | C11 | 172.3° | 179.7° |
C13 | C14 | C15 | H17 | 178.8° | 179.8° |
C9 | N5 | C10 | H20 | 180.0° | 180.0° |
C9 | N5 | C10 | N6 | 179.5° | 180.0° |
C9 | N5 | C10 | O1 | 0.7° | 0.0° |
N5 | C9 | C8 | H3 | 64.9° | 60.0° |
N5 | C9 | C8 | H4 | 53.8° | 60.0° |
N5 | C9 | H5 | H6 | 118.8° | 120.0° |
N5 | C10 | N6 | O1 | 178.9° | 180.0° |
N5 | C10 | N6 | C11 | 178.9° | 180.0° |
C10 | N5 | C9 | H5 | 144.6° | 60.0° |
C10 | N5 | C9 | H6 | 25.3° | 60.0° |
N5 | C10 | N6 | H12 | 1.1° | 0.0° |
C13 | C12 | C11 | N6 | 171.3° | 90.0° |
C13 | C12 | C11 | H13 | 50.5° | 30.0° |
C13 | C12 | C11 | H14 | 67.8° | 149.9° |
C13 | C12 | C17 | H15 | 178.6° | 180.0° |
C12 | C13 | C14 | H18 | 177.8° | 180.0° |
C12 | C11 | N6 | C10 | 79.8° | 180.0° |
C12 | C11 | N6 | H13 | 120.9° | 120.0° |
C12 | C11 | N6 | H14 | 120.9° | 120.0° |
C12 | C11 | N6 | H12 | 100.1° | 0.0° |
C12 | C11 | H13 | H14 | 117.3° | 120.0° |
C11 | C12 | C17 | H15 | 6.9° | 0.2° |
C11 | C12 | C13 | H19 | 7.7° | 0.1° |
C10 | N6 | C11 | H12 | 180.0° | 180.0° |
C10 | N6 | C11 | H13 | 41.0° | 60.0° |
C10 | N6 | C11 | H14 | 159.3° | 60.0° |
N6 | C10 | N5 | H20 | 0.5° | 0.0° |
O1 | C10 | N6 | C11 | 2.2° | 0.0° |
O1 | C10 | N6 | H12 | 177.7° | 180.0° |
O1 | C10 | N5 | H20 | 179.4° | 180.0° |
N6 | C11 | H13 | H14 | 117.3° | 120.0° |
H1 | C7 | C6 | H9 | 67.1° | 66.0° |
H2 | C7 | C6 | H9 | 173.6° | 174.0° |
H3 | C8 | C9 | H5 | 174.7° | 60.0° |
H3 | C8 | C9 | H6 | 55.5° | 180.0° |
H4 | C8 | C9 | H5 | 66.6° | 180.0° |
H4 | C8 | C9 | H6 | 174.2° | 60.0° |
H5 | C9 | N5 | H20 | 35.4° | 120.0° |
H6 | C9 | N5 | H20 | 154.6° | 120.0° |
H8 | C5 | C19 | H23 | 165.4° | 160.3° |
H9 | C6 | C18 | H21 | 114.9° | 123.7° |
H11 | O3 | C19 | H23 | 56.5° | 56.3° |
H12 | N6 | C11 | H13 | 139.0° | 120.0° |
H12 | N6 | C11 | H14 | 20.7° | 120.0° |
H15 | C17 | C16 | H16 | 0.4° | 0.1° |
H16 | C16 | C15 | H17 | 0.3° | 0.0° |
H17 | C15 | C14 | H18 | 1.1° | 0.1° |
H18 | C14 | C13 | H19 | 2.3° | 0.3° |
H21 | C18 | O2 | H22 | 58.8° | 57.5° |
H21 | C18 | C19 | H23 | 28.0° | 21.4° |