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YVR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C7C2sing1.53Å1.52Å
C4C3sing1.55Å1.52Å
C4C5sing1.52Å1.50Å
C3C2sing1.54Å1.53Å
C5O1sing1.34Å1.45Å
C5O6doub1.21Å1.22Å
O1C2sing1.45Å1.43Å
C4H1sing1.09Å1.10Å
C4H2sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C3H4sing1.09Å1.10Å
C2H5sing1.09Å1.10Å
C7H6sing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C7H8sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C7C2C3111.7°109.7°
C7C2O1110.8°110.1°
C7C2H5108.5°110.0°
C2C7H6109.5°109.5°
C2C7H7109.5°109.5°
C2C7H8109.4°109.5°
C3C4C5101.8°103.0°
C4C3C2107.5°102.2°
C3C4H1111.4°110.7°
C3C4H2111.4°110.7°
C4C3H3110.0°110.9°
C4C3H4110.0°110.9°
C4C5O1113.0°108.6°
C4C5O6120.9°125.7°
C5C4H1111.3°110.5°
C5C4H2111.3°110.9°
C3C2O1107.7°106.6°
C2C3H3110.0°111.0°
C2C3H4110.0°110.7°
C3C2H5108.4°110.3°
O1C5O6119.5°125.7°
C5O1C2106.7°111.5°
O1C2H5109.7°110.0°
H1C4H2109.5°110.8°
H3C3H4109.4°110.9°
H6C7H7109.5°109.4°
H6C7H8109.5°109.5°
H7C7H8109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C7C2C3C4140.8°134.7°
C7C2C3O1121.9°119.2°
C7C2C3H5119.5°121.4°
C7C2O1C5139.1°117.0°
C7C2O1H5119.8°121.4°
C7C2C3H321.1°16.4°
C7C2C3H499.5°107.2°
C2C7H6H7120.0°120.0°
C2C7H6H8120.0°120.0°
C2C7H7H8120.0°120.0°
C3C4C5H1118.8°118.3°
C3C4C5H2118.8°118.4°
C4C3C2H3119.7°118.3°
C4C3C2H4119.7°118.1°
C3C4C5O12.9°28.5°
C3C4C5O6154.3°151.2°
C4C3C2O118.9°15.5°
C3C4H1H2123.6°123.2°
C4C3H3H4121.0°123.6°
C4C3C2H599.7°104.0°
C5C4C3C212.8°25.4°
C4C5O1O6151.9°179.7°
C4C5O1C28.8°19.4°
C5C4H1H2123.5°123.3°
C5C4C3H3106.9°93.0°
C5C4C3H4132.5°143.4°
C3C2O1C516.7°1.9°
C3C2O1H5117.8°119.7°
C2C3C4H1106.0°143.6°
C2C3C4H2131.5°93.2°
C2C3H3H4120.9°123.5°
C3C2C7H6180.0°58.5°
C3C2C7H760.0°61.5°
C3C2C7H860.0°178.5°
O1C5C4H1115.9°146.8°
O1C5C4H2121.7°89.9°
C5O1C2H5101.1°121.6°
O6C5O1C2143.1°160.3°
O6C5C4H135.5°32.9°
O6C5C4H286.9°90.4°
O1C2C3H3100.8°102.8°
O1C2C3H4138.6°133.6°
O1C2C7H660.0°58.5°
O1C2C7H760.0°178.5°
O1C2C7H8180.0°61.4°
H1C4C3H3134.3°25.2°
H1C4C3H413.7°98.4°
H2C4C3H311.8°148.5°
H2C4C3H4108.8°24.8°
H3C3C2H5140.6°137.8°
H4C3C2H520.0°14.2°
H5C2C7H660.6°180.0°
H5C2C7H7179.4°60.0°
H5C2C7H859.4°60.0°
H6C7H7H8120.0°120.0°

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PDB entries from 2024-07-17

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