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SummaryGeometryRelated PDB entries

YVQ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAVCAFsing1.39Å1.38ÅAromatic
CAVCAUdoub1.41Å1.38ÅAromatic
CAVCARsing1.47Å1.38ÅAromatic
CAFCABdoub1.37Å1.38ÅAromatic
CAFHAFsing1.08Å1.08Å
CABCAAsing1.39Å1.39ÅAromatic
CABHABsing1.08Å1.08Å
CAACAEdoub1.38Å1.39ÅAromatic
CAAHAAsing1.08Å1.08Å
CAECAUsing1.39Å1.39ÅAromatic
CAEHAEsing1.08Å1.08Å
CAUNAOsing1.38Å1.33ÅAromatic
NAOCAIsing1.37Å1.33ÅAromatic
CAICARdoub1.36Å1.33ÅAromatic
CAIHAIsing1.08Å1.08Å
CARCASsing1.48Å1.39ÅAromatic
CASCADdoub1.38Å1.32ÅAromatic
CASNAWsing1.37Å1.39ÅAromatic
CADNAMsing1.33Å1.33ÅAromatic
CADHADsing1.08Å1.08Å
NAMCATdoub1.33Å1.33ÅAromatic
CATCAGsing1.41Å1.38ÅAromatic
CATNAWsing1.38Å1.38ÅAromatic
CAGNALdoub1.31Å1.32ÅAromatic
CAGHAGsing1.08Å1.08Å
NALCAQsing1.34Å1.34ÅAromatic
NAWCAJsing1.37Å1.39ÅAromatic
CAJCAQdoub1.36Å1.39ÅAromatic
CAJHAJsing1.08Å1.08Å
CAQCAPsing1.48Å1.39ÅAromatic
CAPCACdoub1.36Å1.32ÅAromatic
CAPCAHsing1.41Å1.32ÅAromatic
CACNAKsing1.35Å1.33ÅAromatic
CACHACsing1.08Å1.08Å
CAHNANdoub1.31Å1.33ÅAromatic
CAHHAHsing1.08Å1.08Å
NANNAKsing1.40Å1.23ÅAromatic
NAKHAKsing0.97Å1.00Å
NAOH12sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAFCAVCAU120.7°120.0°
CAFCAVCAR133.3°133.9°
CAVCAFCAB119.4°119.8°
CAVCAFHAF120.3°120.1°
CAUCAVCAR106.0°106.1°
CAVCAUCAE119.9°119.3°
CAVCAUNAO107.6°107.4°
CAVCARCAI108.0°106.7°
CAVCARCAS122.1°126.7°
CABCAFHAF120.3°120.1°
CAFCABCAA120.2°120.5°
CAFCABHAB119.9°119.8°
CAACABHAB119.9°119.8°
CABCAACAE120.2°120.6°
CABCAAHAA119.9°119.7°
CAECAAHAA119.9°119.7°
CAACAECAU119.7°119.8°
CAACAEHAE120.2°120.1°
CAUCAEHAE120.2°120.1°
CAECAUNAO132.5°133.3°
CAUNAOCAI109.3°110.2°
CAUNAOH12125.4°124.9°
NAOCAICAR109.0°109.7°
NAOCAIHAI125.5°125.2°
CAINAOH12125.3°124.9°
CARCAIHAI125.5°125.1°
CAICARCAS129.7°126.7°
CARCASCAD127.2°126.7°
CARCASNAW124.9°126.7°
CADCASNAW107.8°106.7°
CASCADNAM109.2°108.4°
CASCADHAD125.4°125.8°
CASNAWCAT105.6°107.1°
CASNAWCAJ135.4°133.6°
NAMCADHAD125.4°125.8°
CADNAMCAT109.5°109.5°
NAMCATCAG132.5°132.8°
NAMCATNAW107.8°108.3°
CAGCATNAW119.7°118.9°
CATCAGNAL120.6°119.9°
CATCAGHAG119.7°120.1°
CATNAWCAJ118.9°119.3°
NALCAGHAG119.7°120.0°
CAGNALCAQ121.9°121.3°
NALCAQCAJ120.4°121.0°
NALCAQCAP118.6°119.5°
NAWCAJCAQ118.6°119.6°
NAWCAJHAJ120.7°120.2°
CAQCAJHAJ120.7°120.2°
CAJCAQCAP121.0°119.5°
CAQCAPCAC126.2°126.2°
CAQCAPCAH127.9°126.2°
CACCAPCAH105.9°107.5°
CAPCACNAK107.6°107.6°
CAPCACHAC126.2°126.2°
CAPCAHNAN107.7°108.1°
CAPCAHHAH126.2°125.9°
NAKCACHAC126.2°126.2°
CACNAKNAN109.6°108.2°
CACNAKHAK125.2°125.9°
NANCAHHAH126.1°126.0°
CAHNANNAK109.2°108.6°
NANNAKHAK125.2°125.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAFCAVCAUCAR177.5°179.7°
CAVCAFCABHAF180.0°179.9°
CAVCAFCABCAA0.6°0.0°
CAVCAFCABHAB179.4°180.0°
CAFCAVCAUCAE1.0°0.0°
CAFCAVCAUNAO179.5°179.9°
CAFCAVCARCAI179.6°180.0°
CAFCAVCARCAS4.3°0.0°
CAUCAVCAFCAB1.1°0.0°
CAUCAVCAFHAF178.9°179.9°
CAVCAUCAECAA0.5°0.0°
CAVCAUCAENAO179.3°179.9°
CAVCAUCAEHAE179.5°179.9°
CAVCAUNAOCAI0.7°0.0°
CAUCAVCARCAI2.4°0.3°
CAUCAVCARCAS178.6°179.7°
CAVCAUNAOH12179.3°179.9°
CARCAVCAFCAB177.8°179.7°
CARCAVCAFHAF2.2°0.4°
CARCAVCAUCAE178.6°179.7°
CARCAVCAUNAO1.9°0.2°
CAVCARCAINAO2.1°0.3°
CAVCARCAICAS175.8°180.0°
CAVCARCAIHAI177.9°179.8°
CAVCARCASCAD8.5°0.1°
CAVCARCASNAW175.8°179.7°
CAFCABCAAHAB180.0°180.0°
CAFCABCAACAE0.0°0.0°
CAFCABCAAHAA180.0°180.0°
HAFCAFCABCAA179.4°179.9°
HAFCAFCABHAB0.6°0.1°
CABCAACAEHAA180.0°180.0°
CABCAACAECAU0.0°0.0°
CABCAACAEHAE180.0°179.9°
HABCABCAACAE180.0°180.0°
HABCABCAAHAA0.0°0.0°
CAACAECAUHAE180.0°179.9°
CAACAECAUNAO179.8°180.0°
HAACAACAECAU179.9°180.0°
HAACAACAEHAE0.1°0.1°
CAECAUNAOCAI179.9°179.9°
CAECAUNAOH120.1°0.1°
HAECAECAUNAO0.2°0.1°
CAUNAOCAIH12180.0°180.0°
CAUNAOCAICAR0.8°0.2°
CAUNAOCAIHAI179.1°179.9°
NAOCAICARHAI180.0°179.9°
NAOCAICARCAS177.9°179.7°
CAICARCASCAD166.8°179.9°
CAICARCASNAW8.9°0.3°
CARCAINAOH12179.2°179.8°
HAICAICARCAS2.1°0.2°
HAICAINAOH120.9°0.0°
CARCASCADNAW176.3°179.7°
CARCASCADNAM178.1°179.9°
CARCASCADHAD1.9°0.0°
CARCASNAWCAT178.3°179.9°
CARCASNAWCAJ4.0°0.1°
CASCADNAMHAD180.0°180.0°
CASCADNAMCAT1.0°0.0°
CADCASNAWCAT1.9°0.4°
CADCASNAWCAJ179.6°179.8°
NAWCASCADNAM1.8°0.3°
NAWCASCADHAD178.2°179.7°
CASNAWCATNAM1.3°0.5°
CASNAWCATCAG179.1°179.8°
CASNAWCATCAJ178.1°179.8°
CASNAWCAJCAQ178.0°179.1°
CASNAWCAJHAJ1.9°0.1°
CADNAMCATCAG179.7°180.0°
CADNAMCATNAW0.2°0.3°
HADCADNAMCAT179.0°180.0°
NAMCATCAGNAW179.5°179.7°
NAMCATCAGNAL179.9°180.0°
NAMCATCAGHAG0.1°0.0°
NAMCATNAWCAJ179.4°179.7°
CATCAGNALHAG180.0°180.0°
CATCAGNALCAQ0.6°0.0°
CAGCATNAWCAJ1.0°0.1°
NAWCATCAGNAL0.4°0.3°
NAWCATCAGHAG179.6°179.7°
CATNAWCAJCAQ0.6°0.7°
CATNAWCAJHAJ179.4°179.8°
CAGNALCAQCAJ0.9°0.6°
CAGNALCAQCAP179.5°179.9°
HAGCAGNALCAQ179.5°180.0°
NALCAQCAJNAW0.3°1.0°
NALCAQCAJCAP178.6°179.3°
NALCAQCAJHAJ179.7°179.9°
NALCAQCAPCAC2.9°0.1°
NALCAQCAPCAH178.8°179.7°
NAWCAJCAQHAJ180.0°179.2°
NAWCAJCAQCAP178.9°179.7°
CAJCAQCAPCAC175.7°179.4°
CAJCAQCAPCAH2.6°0.4°
HAJCAJCAQCAP1.1°0.5°
CAQCAPCACCAH178.6°179.8°
CAQCAPCACNAK179.3°180.0°
CAQCAPCACHAC0.7°0.0°
CAQCAPCAHNAN179.3°180.0°
CAQCAPCAHHAH0.7°0.0°
CAPCACNAKHAC180.0°180.0°
CACCAPCAHNAN0.7°0.2°
CACCAPCAHHAH179.3°179.8°
CAPCACNAKNAN0.4°0.1°
CAPCACNAKHAK179.6°180.0°
CAHCAPCACNAK0.7°0.2°
CAHCAPCACHAC179.3°179.8°
CAPCAHNANHAH180.0°180.0°
CAPCAHNANNAK0.5°0.2°
CACNAKNANCAH0.1°0.0°
CACNAKNANHAK180.0°179.9°
HACCACNAKNAN179.6°179.9°
HACCACNAKHAK0.4°0.0°
CAHNANNAKHAK180.0°179.9°
HAHCAHNANNAK179.5°179.9°

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PDB entries from 2024-07-17

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