Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

YVF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C24C25doub1.38Å1.38ÅAromatic
C24C23sing1.38Å1.38ÅAromatic
C25C16sing1.39Å1.38ÅAromatic
C23C18doub1.38Å1.38ÅAromatic
C08S09sing1.76Å1.62ÅAromatic
C08C07doub1.33Å1.43ÅAromatic
C16N15sing1.40Å1.45Å
C16C17doub1.39Å1.38ÅAromatic
S09C05sing1.76Å1.62ÅAromatic
C18C17sing1.38Å1.38ÅAromatic
C18C19sing1.51Å1.52Å
C27C26sing1.51Å1.52Å
F22C19sing1.40Å1.36Å
N15C26sing1.36Å1.31ÅAromatic
N15N14sing1.28Å1.36ÅAromatic
C26C28doub1.35Å1.37ÅAromatic
C07C06sing1.38Å1.53ÅAromatic
F21C19sing1.40Å1.36Å
C19F20sing1.40Å1.36Å
N14C13doub1.32Å1.33ÅAromatic
C28C13sing1.42Å1.39ÅAromatic
C05C06doub1.33Å1.43ÅAromatic
C05C04sing1.51Å1.53Å
C13C12sing1.48Å1.52Å
N11C12sing1.35Å1.45Å
N11C04sing1.47Å1.44Å
C12O29doub1.22Å1.18Å
C10C04sing1.53Å1.52Å
C04C03sing1.51Å1.52Å
C03O02sing1.34Å1.40Å
C03O30doub1.21Å1.18Å
O02C01sing1.45Å1.40Å
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C06H4sing1.08Å1.08Å
C07H5sing1.08Å1.08Å
C08H6sing1.08Å1.08Å
C10H7sing1.09Å1.10Å
C10H8sing1.09Å1.10Å
C10H9sing1.09Å1.10Å
C17H10sing1.08Å1.08Å
C23H11sing1.08Å1.08Å
C24H12sing1.08Å1.08Å
C25H13sing1.08Å1.08Å
C27H14sing1.09Å1.10Å
C27H15sing1.09Å1.10Å
C27H16sing1.09Å1.10Å
C28H17sing1.08Å1.08Å
N11H18sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C25C24C23120.2°120.1°
C24C25C16119.6°119.9°
C25C24H12119.9°119.9°
C24C25H13120.2°120.1°
C24C23C18119.7°120.1°
C24C23H11120.1°119.9°
C23C24H12119.9°120.0°
C25C16N15121.7°120.1°
C25C16C17120.3°119.8°
C16C25H13120.2°120.0°
C23C18C17120.2°120.1°
C23C18C19120.3°119.9°
C18C23H11120.1°120.0°
S09C08C07109.1°109.6°
C08S09C05101.4°90.9°
S09C08H6125.4°125.2°
C08C07C06110.2°114.9°
C08C07H5124.9°122.5°
C07C08H6125.4°125.2°
N15C16C17118.0°120.1°
C16N15C26128.6°124.9°
C16N15N14120.8°125.0°
C16C17C18119.9°120.0°
C16C17H10120.0°120.0°
S09C05C06109.5°109.6°
S09C05C04124.0°125.2°
C17C18C19119.5°120.0°
C18C17H10120.0°120.0°
C18C19F22109.3°109.4°
C18C19F21109.4°109.5°
C18C19F20109.0°109.4°
C27C26N15127.1°126.5°
C27C26C28125.6°126.4°
C26C27H14109.5°109.5°
C26C27H15109.5°109.5°
C26C27H16109.4°109.5°
F22C19F21109.8°109.5°
F22C19F20109.4°109.5°
C26N15N14110.6°110.1°
N15C26C28107.3°107.1°
N15N14C13107.5°110.1°
C26C28C13106.7°105.6°
C26C28H17126.7°127.2°
C07C06C05109.7°114.9°
C07C06H4125.2°122.5°
C06C07H5124.9°122.6°
F21C19F20109.9°109.5°
N14C13C28107.9°107.1°
N14C13C12122.4°126.5°
C28C13C12129.6°126.4°
C13C28H17126.7°127.3°
C06C05C04126.5°125.2°
C05C06H4125.2°122.5°
C05C04N11106.1°109.5°
C05C04C10109.1°109.5°
C05C04C03111.8°109.4°
C13C12N11115.0°120.0°
C13C12O29121.5°120.0°
C12N11C04125.5°120.0°
N11C12O29123.4°120.0°
C12N11H18117.2°120.0°
N11C04C10111.1°109.5°
N11C04C03108.5°109.5°
C04N11H18117.2°120.0°
C10C04C03110.2°109.5°
C04C10H7109.5°109.4°
C04C10H8109.5°109.5°
C04C10H9109.5°109.4°
C04C03O02119.7°120.0°
C04C03O30120.1°120.0°
O02C03O30120.1°120.0°
C03O02C01114.0°117.0°
O02C01H1109.5°109.4°
O02C01H2109.4°109.5°
O02C01H3109.4°109.5°
H1C01H2109.5°109.5°
H1C01H3109.5°109.5°
H2C01H3109.5°109.5°
H7C10H8109.5°109.5°
H7C10H9109.5°109.5°
H8C10H9109.5°109.5°
H14C27H15109.5°109.5°
H14C27H16109.4°109.5°
H15C27H16109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C25C24C23H12180.0°179.4°
C24C25C16H13180.0°179.4°
C25C24C23C180.0°0.4°
C24C25C16N15179.5°179.7°
C24C25C16C171.1°0.6°
C25C24C23H11180.0°179.7°
C23C24C25C160.7°0.7°
C24C23C18H11180.0°179.9°
C24C23C18C170.3°0.0°
C24C23C18C19180.0°179.9°
C23C24C25H13179.3°180.0°
C25C16N15C17178.5°179.6°
C25C16C17C180.8°0.3°
C25C16N15C2662.4°138.0°
C25C16N15N14117.9°42.0°
C25C16C17H10179.2°179.8°
C16C25C24H12179.4°180.0°
C23C18C17C160.1°0.0°
C23C18C17C19179.8°180.0°
C23C18C19F2258.7°150.0°
C23C18C19F2161.6°30.0°
C23C18C19F20178.3°90.0°
C23C18C17H10179.9°179.9°
C18C23C24H12180.0°179.8°
S09C08C07H6180.0°179.7°
S09C08C07C060.3°0.3°
C08S09C05C060.2°0.4°
C08S09C05C04179.6°180.0°
S09C08C07H5179.7°179.8°
C07C08S09C050.3°0.4°
C08C07C06H5180.0°179.9°
C08C07C06C050.2°0.0°
C08C07C06H4179.8°180.0°
N15C16C17C18179.3°179.9°
C16N15C26C270.3°0.2°
C16N15C26N14179.7°180.0°
C16N15C26C28179.8°180.0°
C16N15N14C13179.6°179.8°
N15C16C17H100.7°0.1°
N15C16C25H130.5°0.4°
C16C17C18H10180.0°179.9°
C16C17C18C19179.6°180.0°
C17C16N15C26119.1°42.4°
C17C16N15N1460.6°137.6°
C17C16C25H13178.9°180.0°
S09C05C06C070.0°0.3°
S09C05C06C04179.8°179.7°
S09C05C04N1139.4°0.3°
S09C05C04C1080.3°119.6°
S09C05C04C03157.5°120.3°
S09C05C06H4180.0°179.8°
C05S09C08H6179.7°179.9°
C17C18C19F22121.6°30.0°
C17C18C19F21118.2°150.0°
C17C18C19F202.0°90.0°
C17C18C23H11179.7°180.0°
C18C19F22F21120.0°120.0°
C18C19F22F20119.3°119.9°
C18C19F21F20119.6°120.0°
C19C18C17H100.4°0.0°
C19C18C23H110.1°0.0°
C27C26N15C28179.9°179.8°
C27C26N15N14180.0°179.8°
C27C26C28C13179.8°180.0°
C26C27H14H15120.0°120.0°
C26C27H14H16120.0°120.0°
C26C27H15H16120.0°120.0°
C27C26C28H170.2°0.1°
F22C19F21F20120.4°120.0°
C26N15N14C130.1°0.2°
N15C26C28C130.3°0.2°
N15C26C27H1489.9°84.6°
N15C26C27H15150.0°35.4°
N15C26C27H1630.0°155.4°
N15C26C28H17179.7°179.9°
N14N15C26C280.1°0.0°
N15N14C13C280.3°0.3°
N15N14C13C12179.7°180.0°
C26C28C13N140.4°0.3°
C26C28C13H17180.0°179.9°
C26C28C13C12179.7°180.0°
C28C26C27H1490.0°95.2°
C28C26C27H1530.1°144.8°
C28C26C27H16150.1°24.9°
C07C06C05H4180.0°180.0°
C07C06C05C04179.8°180.0°
C06C07C08H6179.7°180.0°
N14C13C28C12179.3°179.8°
N14C13C12N1130.2°0.3°
N14C13C12O29148.6°179.7°
N14C13C28H17179.6°179.8°
C28C13C12N11149.0°180.0°
C28C13C12O2932.2°0.0°
C06C05C04N11140.3°180.0°
C06C05C04C1099.9°60.0°
C06C05C04C0322.2°60.0°
C05C06C07H5179.8°179.9°
C05C04N11C12172.9°180.0°
C05C04N11C10118.4°120.0°
C05C04N11C03120.3°120.0°
C05C04C10C03123.1°120.0°
C05C04C03O0290.3°85.0°
C05C04C03O3090.2°95.0°
C04C05C06H40.2°0.1°
C05C04C10H7180.0°180.0°
C05C04C10H860.0°60.0°
C05C04C10H960.0°60.0°
C05C04N11H187.2°0.0°
C13C12N11O29178.8°180.0°
C13C12N11C04179.4°180.0°
C12C13C28H170.3°0.0°
C13C12N11H180.6°0.1°
C12N11C04H18180.0°180.0°
C12N11C04C1054.4°60.0°
C12N11C04C0366.8°60.0°
C04N11C12O290.6°0.0°
N11C04C10C03120.3°120.0°
N11C04C03O0226.4°35.0°
N11C04C03O30153.1°145.0°
N11C04C10H763.4°60.1°
N11C04C10H856.6°60.0°
N11C04C10H9176.6°180.0°
O29C12N11H18179.4°180.0°
C10C04C03O02148.3°155.0°
C10C04C03O3031.3°25.0°
C04C10H7H8120.0°120.0°
C04C10H7H9120.0°119.9°
C04C10H8H9120.0°120.0°
C10C04N11H18125.6°120.0°
C04C03O02O30179.6°180.0°
C04C03O02C01167.7°180.0°
C03C04C10H756.9°60.0°
C03C04C10H8176.9°180.0°
C03C04C10H963.1°60.0°
C03C04N11H18113.2°120.0°
C03O02C01H1180.0°180.0°
C03O02C01H260.0°60.0°
C03O02C01H360.0°60.0°
O30C03O02C0111.9°0.0°
O02C01H1H2120.0°120.0°
O02C01H1H3120.0°120.0°
O02C01H2H3120.0°120.0°
H1C01H2H3120.0°120.0°
H4C06C07H50.2°0.0°
H5C07C08H60.3°0.1°
H7C10H8H9120.0°120.0°
H11C23C24H120.0°0.3°
H12C24C25H130.6°0.6°
H14C27H15H16120.0°120.0°

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon