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YVD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C22N11sing1.47Å1.43Å
C22C23sing1.55Å1.54Å
N11C10sing1.34Å1.48Å
C23C09sing1.55Å1.51Å
C10O12doub1.21Å1.15Å
C10C09sing1.51Å1.46Å
C20C21sing1.53Å1.55Å
C20O16sing1.45Å1.40Å
O17C15doub1.21Å1.18Å
C09C08sing1.53Å1.59Å
C08C07sing1.53Å1.58Å
C15O16sing1.34Å1.40Å
C15C14sing1.51Å1.58Å
C07C13sing1.53Å1.52Å
C07N06sing1.47Å1.43Å
C13C14sing1.53Å1.60Å
O19C18doub1.21Å1.17Å
N06C18sing1.35Å1.45Å
C18C04sing1.51Å1.51Å
N32C31sing1.47Å1.43Å
C31C01sing1.51Å1.53Å
C31C33sing1.53Å1.54Å
O03C01doub1.21Å1.16Å
C01N02sing1.35Å1.47Å
N02C04sing1.46Å1.45Å
C04C05sing1.53Å1.52Å
C33C37sing1.51Å1.54Å
C05C27sing1.51Å1.51Å
C37C36doub1.38Å1.52ÅAromatic
C37C38sing1.38Å1.53ÅAromatic
C36C35sing1.38Å1.52ÅAromatic
C27C26doub1.38Å1.51ÅAromatic
C27C28sing1.38Å1.52ÅAromatic
C26C25sing1.38Å1.50ÅAromatic
C38C39doub1.38Å1.52ÅAromatic
C28C29doub1.38Å1.51ÅAromatic
C35C34doub1.38Å1.53ÅAromatic
C25C24doub1.39Å1.51ÅAromatic
C39C34sing1.38Å1.52ÅAromatic
C34F40sing1.35Å1.33Å
C29C24sing1.38Å1.51ÅAromatic
C24F30sing1.35Å1.32Å
C13H1sing1.09Å1.10Å
C13H131sing1.09Å1.10Å
C20H202sing1.09Å1.10Å
C20H201sing1.09Å1.10Å
C21H212sing1.09Å1.10Å
C21H211sing1.09Å1.10Å
C21H213sing1.09Å1.10Å
C22H222sing1.09Å1.10Å
C22H221sing1.09Å1.10Å
C26H261sing1.08Å1.08Å
C28H281sing1.08Å1.08Å
C04H041sing1.09Å1.10Å
C05H051sing1.09Å1.10Å
C05H052sing1.09Å1.10Å
C07H071sing1.09Å1.10Å
C08H081sing1.09Å1.10Å
C08H082sing1.09Å1.10Å
C09H091sing1.09Å1.10Å
C14H141sing1.09Å1.10Å
C14H142sing1.09Å1.10Å
C23H232sing1.09Å1.10Å
C23H231sing1.09Å1.10Å
C25H251sing1.08Å1.08Å
C29H291sing1.08Å1.08Å
C31H311sing1.09Å1.10Å
C33H331sing1.09Å1.10Å
C33H332sing1.09Å1.10Å
C35H351sing1.08Å1.08Å
C36H361sing1.08Å1.08Å
C38H381sing1.08Å1.08Å
C39H391sing1.08Å1.08Å
N02H021sing0.97Å1.00Å
N06H061sing0.97Å1.00Å
N11H111sing0.97Å1.00Å
N32H322sing1.01Å1.00Å
N32H321sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N11C22C23104.2°105.5°
C22N11C10108.5°111.3°
N11C22H222110.8°110.3°
N11C22H221110.8°110.2°
C22N11H111125.8°124.4°
C22C23C09108.6°101.7°
C23C22H222110.8°110.5°
C23C22H221110.8°109.9°
C22C23H232109.7°111.0°
C22C23H231109.7°111.0°
N11C10O12121.3°124.9°
N11C10C09111.5°110.1°
C10N11H111125.7°124.3°
C23C09C10102.3°104.2°
C23C09C08112.7°110.5°
C23C09H091110.1°110.6°
C09C23H232109.7°111.2°
C09C23H231109.7°110.8°
O12C10C09127.1°125.0°
C10C09C08111.8°110.5°
C10C09H091110.9°110.5°
C21C20O16108.3°109.5°
C21C20H202109.8°109.5°
C21C20H201109.8°109.5°
C20C21H212109.5°109.4°
C20C21H211109.4°109.5°
C20C21H213109.5°109.5°
C20O16C15114.3°117.0°
O16C20H202109.8°109.5°
O16C20H201109.8°109.4°
O17C15O16116.9°120.1°
O17C15C14123.5°119.9°
C09C08C07110.3°109.5°
C09C08H081109.2°109.5°
C09C08H082109.3°109.5°
C08C09H091109.0°110.4°
C08C07C13117.4°109.5°
C08C07N06109.6°109.5°
C08C07H071108.9°109.5°
C07C08H081109.3°109.5°
C07C08H082109.3°109.5°
O16C15C14119.6°120.0°
C15C14C13113.7°109.5°
C15C14H141108.4°109.4°
C15C14H142108.4°109.4°
C13C07N06100.1°109.4°
C07C13C14113.7°109.5°
C07C13H1108.4°109.5°
C07C13H131108.4°109.5°
C13C07H071109.7°109.5°
C07N06C18118.7°120.0°
N06C07H071111.0°109.4°
C07N06H061120.7°120.0°
C14C13H1108.4°109.5°
C14C13H131108.4°109.5°
C13C14H141108.4°109.5°
C13C14H142108.4°109.5°
O19C18N06123.9°120.0°
O19C18C04120.5°120.0°
N06C18C04115.6°120.0°
C18N06H061120.7°120.0°
C18C04N02105.6°109.5°
C18C04C05105.1°109.4°
C18C04H041109.9°109.5°
N32C31C01105.6°109.5°
N32C31C33112.8°109.5°
N32C31H311109.3°109.4°
C31N32H322109.5°111.0°
C31N32H321109.5°111.0°
C01C31C33113.0°109.5°
C31C01O03118.1°120.0°
C31C01N02123.9°120.0°
C01C31H311108.1°109.5°
C31C33C37114.2°109.5°
C33C31H311107.9°109.5°
C31C33H331108.3°109.5°
C31C33H332108.3°109.4°
O03C01N02117.9°120.0°
C01N02C04120.6°120.0°
C01N02H021119.7°119.9°
N02C04C05115.4°109.5°
N02C04H041110.8°109.5°
C04N02H021119.7°120.1°
C04C05C2799.8°109.5°
C05C04H041109.7°109.5°
C04C05H051111.8°109.5°
C04C05H052111.9°109.5°
C33C37C36121.0°119.9°
C33C37C38118.4°120.0°
C37C33H331108.3°109.5°
C37C33H332108.3°109.5°
C05C27C26118.7°120.0°
C05C27C28118.7°120.0°
C27C05H051111.8°109.4°
C27C05H052111.8°109.5°
C36C37C38120.6°120.1°
C37C36C35119.6°120.0°
C37C36H361120.2°120.0°
C37C38C39119.8°120.0°
C37C38H381120.1°120.0°
C36C35C34119.4°120.0°
C36C35H351120.3°120.0°
C35C36H361120.2°120.0°
C26C27C28122.6°120.1°
C27C26C25117.8°120.0°
C27C26H261121.1°120.0°
C27C28C29119.6°120.0°
C27C28H281120.2°120.0°
C26C25C24119.4°119.9°
C25C26H261121.1°119.9°
C26C25H251120.4°120.0°
C38C39C34119.4°120.0°
C39C38H381120.1°120.0°
C38C39H391120.3°120.0°
C28C29C24117.1°120.0°
C29C28H281120.2°120.0°
C28C29H291121.5°120.0°
C35C34C39121.2°120.0°
C35C34F40118.5°120.0°
C34C35H351120.3°120.0°
C25C24C29123.7°119.9°
C25C24F30116.5°120.0°
C24C25H251120.3°120.0°
C39C34F40120.3°120.1°
C34C39H391120.3°120.0°
C29C24F30119.8°120.1°
C24C29H291121.4°120.0°
H1C13H131109.4°109.4°
H202C20H201109.4°109.5°
H212C21H211109.5°109.5°
H212C21H213109.4°109.5°
H211C21H213109.5°109.5°
H222C22H221109.5°110.3°
H051C05H052109.4°109.5°
H081C08H082109.5°109.5°
H141C14H142109.5°109.5°
H232C23H231109.5°110.9°
H331C33H332109.5°109.5°
H322N32H321109.5°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N11C22C23H222119.2°119.2°
N11C22C23H221119.1°118.9°
C22N11C10H111180.0°179.7°
N11C22C23C0921.6°25.2°
C22N11C10O12179.0°179.7°
C22N11C10C090.7°0.1°
N11C22H222H221122.4°122.0°
N11C22C23H232141.4°143.5°
N11C22C23H23198.3°92.7°
C23C22N11C1012.5°16.7°
C22C23C09H232119.8°118.2°
C22C23C09H231119.9°118.0°
C22C23C09C1021.4°24.8°
C22C23C09C08141.5°143.5°
C23C22H222H221122.4°121.7°
C22C23C09H09196.5°94.0°
C22C23H232H231120.4°123.8°
C23C22N11H111167.4°163.0°
N11C10C09C2313.7°16.5°
N11C10O12C09178.1°179.7°
N11C10C09C08134.6°135.2°
C10N11C22H222106.6°136.0°
C10N11C22H221131.7°102.0°
N11C10C09H091103.6°102.4°
C23C09C10O12168.1°163.8°
C23C09C10C08120.8°118.7°
C23C09C10H091117.4°118.8°
C23C09C08H091122.6°122.6°
C23C09C08C0757.0°178.9°
C09C23C22H22297.6°144.4°
C09C23C22H221140.7°93.6°
C23C09C08H08163.1°61.1°
C23C09C08H082177.1°58.9°
C09C23H232H231120.4°123.7°
O12C10C09C0847.2°45.1°
O12C10C09H09174.6°77.4°
O12C10N11H1111.0°0.6°
C10C09C08H091122.9°122.6°
C10C09C08C07171.5°66.2°
C10C09C08H08151.4°53.8°
C10C09C08H08268.3°173.7°
C10C09C23H232141.2°143.0°
C10C09C23H23198.5°93.3°
C09C10N11H111179.4°179.6°
C21C20O16H202119.8°120.0°
C21C20O16H201119.8°120.0°
C21C20O16C15101.5°180.0°
C21C20H202H201120.5°120.0°
C20C21H212H211120.0°120.0°
C20C21H212H213120.0°120.0°
C20C21H211H213120.0°120.0°
C20O16C15O1772.5°0.0°
C20O16C15C14107.7°180.0°
O16C20H202H201120.6°120.0°
O16C20C21H212180.0°180.0°
O16C20C21H21160.0°60.0°
O16C20C21H21360.0°60.0°
O17C15O16C14179.9°179.9°
O17C15C14C1318.3°0.1°
O17C15C14H141102.3°120.0°
O17C15C14H142138.9°120.0°
C09C08C07H081120.1°120.0°
C09C08C07H082120.1°120.0°
C09C08C07C13169.7°65.3°
C09C08C07N0677.2°174.7°
C09C08C07H07144.4°54.8°
C09C08H081H082119.6°120.0°
C08C09C23H23298.6°98.3°
C08C09C23H23121.7°25.5°
C08C07C13N06118.4°120.1°
C08C07C13H071124.9°120.0°
C08C07N06H071120.3°120.0°
C08C07C13C14163.9°175.0°
C08C07N06C18122.8°81.3°
C08C07C13H143.3°54.9°
C08C07C13H13175.4°65.0°
C07C08H081H082119.7°120.0°
C07C08C09H09165.6°56.3°
C08C07N06H06157.2°98.6°
O16C15C14C13161.5°180.0°
C15O16C20H202138.7°60.0°
C15O16C20H20118.3°60.0°
O16C15C14H14177.8°59.9°
O16C15C14H14240.9°60.0°
C15C14C13C07145.0°180.0°
C15C14C13H141120.6°120.0°
C15C14C13H142120.6°119.9°
C15C14C13H124.3°59.9°
C15C14C13H13194.4°60.0°
C15C14H141H142118.1°119.9°
C13C07N06H071115.7°119.9°
C07C13C14H1120.6°120.0°
C07C13C14H131120.6°120.0°
C13C07N06C18113.2°158.6°
C07C13H1H131118.1°119.9°
C13C07C08H08149.6°174.8°
C13C07C08H08270.2°54.7°
C07C13C14H14124.3°60.0°
C07C13C14H14294.4°60.1°
C13C07N06H06166.8°21.4°
N06C07C13C1477.7°64.9°
C07N06C18O192.5°5.0°
C07N06C18H061180.0°179.9°
C07N06C18C04178.2°175.0°
N06C07C13H1161.7°175.0°
N06C07C13H13143.0°55.1°
N06C07C08H081162.7°54.7°
N06C07C08H08242.9°65.3°
C14C13H1H131118.1°120.0°
C14C13C07H07139.0°55.0°
C13C14H141H142118.1°120.1°
O19C18N06C04179.3°180.0°
O19C18C04N0235.4°0.0°
O19C18C04C0587.1°120.0°
O19C18C04H041154.9°120.0°
O19C18N06H061177.5°175.0°
N06C18C04N02143.9°180.0°
N06C18C04C0593.6°60.0°
N06C18C04H04124.4°60.0°
C18N06C07H0712.5°38.7°
C18C04N02C0171.8°155.0°
C18C04N02C05115.6°120.0°
C18C04N02H041119.0°120.0°
C18C04C05H041118.2°120.0°
C18C04C05C27170.9°175.0°
C18C04C05H05170.6°65.1°
C18C04C05H05252.5°55.0°
C18C04N02H021108.2°25.0°
C04C18N06H0611.8°5.0°
N32C31C01C33123.7°120.0°
N32C31C01H311116.9°119.9°
N32C31C33H311120.9°120.0°
N32C31C01O030.1°20.1°
N32C31C01N02178.2°160.0°
N32C31C33C3754.8°64.9°
N32C31C33H33165.9°175.0°
N32C31C33H332175.5°55.0°
C31N32H322H321120.0°123.9°
C01C31C33H311119.4°120.0°
C31C01O03N02178.2°179.9°
C31C01N02C04178.4°180.0°
C01C31C33C3764.9°175.0°
C01C31C33H331174.4°55.0°
C01C31C33H33255.7°65.0°
C31C01N02H0211.7°0.0°
C01C31N32H322180.0°176.0°
C01C31N32H32160.0°60.1°
C33C31C01O03123.8°100.0°
C33C31C01N0258.1°79.9°
C31C33C37H331120.7°120.0°
C31C33C37H332120.7°119.9°
C31C33C37C3686.3°90.0°
C31C33C37C3895.1°90.0°
C31C33H331H332117.8°119.9°
C33C31N32H32256.1°63.9°
C33C31N32H32163.9°60.0°
O03C01N02C040.2°0.0°
O03C01C31H311116.8°140.0°
O03C01N02H021179.8°180.0°
C01N02C04H021180.0°180.0°
C01N02C04C05172.6°85.0°
C01N02C04H04147.2°35.0°
N02C01C31H31161.3°40.1°
N02C04C05H041126.0°120.0°
N02C04C05C2773.2°65.0°
N02C04C05H05145.2°54.9°
N02C04C05H052168.4°175.0°
C04C05C27H051118.4°120.0°
C04C05C27H052118.4°120.0°
C04C05C27C2694.7°90.0°
C04C05C27C2882.0°89.7°
C04C05H051H052124.5°120.1°
C05C04N02H0217.4°95.0°
C33C37C36C38178.6°180.0°
C33C37C36C35179.2°180.0°
C33C37C38C39179.0°179.8°
C37C33C31H311175.6°55.0°
C37C33H331H332117.9°120.0°
C33C37C36H3610.8°0.0°
C33C37C38H3811.0°0.1°
C05C27C26C28176.6°179.8°
C05C27C26C25177.7°180.0°
C05C27C28C29177.6°180.0°
C05C27C26H2612.3°0.1°
C05C27C28H2812.4°0.0°
C27C05C04H04152.8°55.0°
C27C05H051H052124.5°120.0°
C37C36C35H361180.0°180.0°
C36C37C38C390.4°0.2°
C37C36C35C340.4°0.0°
C36C37C33H33134.4°30.0°
C36C37C33H332153.0°150.1°
C37C36C35H351179.7°180.0°
C36C37C38H381179.6°179.9°
C38C37C36C350.6°0.0°
C37C38C39H381180.0°179.9°
C37C38C39C340.1°0.5°
C38C37C33H331144.3°150.0°
C38C37C33H33225.6°30.0°
C38C37C36H361179.4°180.0°
C37C38C39H391179.9°180.0°
C36C35C34H351180.0°180.0°
C36C35C34C390.2°0.2°
C36C35C34F40179.8°180.0°
C27C26C25H261180.0°179.9°
C26C27C28C291.0°0.3°
C27C26C25C240.6°0.1°
C26C27C28H281179.0°179.8°
C26C27C05H05123.7°29.9°
C26C27C05H052146.9°149.9°
C27C26C25H251179.4°180.0°
C28C27C26C251.1°0.2°
C27C28C29H281180.0°179.9°
C27C28C29C240.3°0.0°
C28C27C26H261178.9°179.7°
C28C27C05H051159.5°150.3°
C28C27C05H05236.4°30.3°
C27C28C29H291179.7°180.0°
C26C25C24H251180.0°179.9°
C26C25C24C290.0°0.3°
C26C25C24F30179.2°179.9°
C38C39C34C350.4°0.5°
C38C39C34H391180.0°179.6°
C38C39C34F40179.5°179.8°
C28C29C24C250.2°0.3°
C28C29C24H291180.0°179.9°
C28C29C24F30179.3°180.0°
C35C34C39F40179.9°179.8°
C34C35C36H361179.6°180.0°
C35C34C39H391179.6°180.0°
C25C24C29F30179.1°179.7°
C24C25C26H261179.4°180.0°
C25C24C29H291179.8°179.7°
C39C34C35H351179.8°179.8°
C34C39C38H381179.9°179.7°
F40C34C35H3510.2°0.0°
F40C34C39H3910.5°0.2°
C24C29C28H281179.7°180.0°
C29C24C25H251179.9°179.8°
F30C24C25H2510.8°0.0°
F30C24C29H2910.7°0.1°
H1C13C07H07181.6°65.1°
H1C13C14H14196.3°180.0°
H1C13C14H142145.0°60.0°
H131C13C07H071159.7°175.0°
H131C13C14H141145.0°60.0°
H131C13C14H14226.2°179.9°
H202C20C21H21260.2°60.0°
H202C20C21H21159.8°60.0°
H202C20C21H213179.8°180.0°
H201C20C21H21260.2°60.0°
H201C20C21H211179.8°180.0°
H201C20C21H21359.8°60.0°
H212C21H211H213120.0°120.0°
H222C22C23H23222.3°97.3°
H222C22C23H231142.5°26.5°
H222C22N11H11173.4°43.6°
H221C22C23H23299.4°24.7°
H221C22C23H23120.8°148.5°
H221C22N11H11148.3°78.4°
H261C26C25H2510.6°0.1°
H281C28C29H2910.3°0.1°
H041C04C05H051171.2°175.0°
H041C04C05H05265.7°65.0°
H041C04N02H021132.8°145.0°
H071C07C08H08175.7°65.2°
H071C07C08H082164.5°174.8°
H071C07N06H061177.5°141.4°
H081C08C09H091174.3°176.3°
H082C08C09H09154.6°63.7°
H091C09C23H23223.3°24.2°
H091C09C23H231143.6°148.0°
H311C31C33H33154.9°65.0°
H311C31C33H33263.7°175.0°
H311C31N32H32263.9°56.1°
H311C31N32H321176.1°180.0°
H351C35C36H3610.3°0.0°
H381C38C39H3910.1°0.1°

222926

PDB entries from 2024-07-24

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