Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

YV8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O20S17doub1.42Å1.45Å
S17O19doub1.42Å1.47Å
S17C18sing1.81Å1.81Å
S17C16sing1.81Å1.82Å
C16C15sing1.51Å1.54Å
C15C21doub1.38Å1.38ÅAromatic
C15C13sing1.39Å1.38ÅAromatic
F14C13sing1.35Å1.37Å
C21C22sing1.38Å1.38ÅAromatic
C13C12doub1.38Å1.38ÅAromatic
C22C11doub1.40Å1.37ÅAromatic
C12C11sing1.40Å1.39ÅAromatic
C11C10sing1.48Å1.51Å
O08C07doub1.22Å1.27Å
C07C06sing1.47Å1.49Å
C07O09sing1.35Å1.27Å
C10C06doub1.38Å1.38ÅAromatic
C10C23sing1.47Å1.41ÅAromatic
C06N05sing1.38Å1.30ÅAromatic
C23C24doub1.40Å1.41ÅAromatic
C23C04sing1.41Å1.39ÅAromatic
C24C25sing1.37Å1.39ÅAromatic
N05C04sing1.37Å1.33ÅAromatic
C04C03doub1.39Å1.41ÅAromatic
C25C26doub1.39Å1.41ÅAromatic
O36C35doub1.22Å1.21Å
C03C26sing1.38Å1.39ÅAromatic
C03C02sing1.51Å1.53Å
C35O34sing1.34Å1.39Å
C35N27sing1.34Å1.41Å
O34C29sing1.46Å1.46Å
C02N27sing1.46Å1.46Å
C02C01sing1.53Å1.52Å
N27C28sing1.47Å1.43Å
C30C29sing1.53Å1.51Å
C30C31sing1.53Å1.53Å
C29C28sing1.54Å1.51Å
C32C31sing1.53Å1.54Å
C32N33sing1.47Å1.45Å
C01H013sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C02H021sing1.09Å1.10Å
C12H121sing1.08Å1.08Å
C16H161sing1.09Å1.10Å
C16H162sing1.09Å1.10Å
C18H182sing1.09Å1.10Å
C18H181sing1.09Å1.10Å
C18H183sing1.09Å1.10Å
C21H211sing1.08Å1.08Å
C22H221sing1.08Å1.08Å
C24H241sing1.08Å1.08Å
C25H251sing1.08Å1.08Å
C26H261sing1.08Å1.08Å
C28H281sing1.09Å1.10Å
C28H282sing1.09Å1.10Å
C29H291sing1.09Å1.10Å
C30H301sing1.09Å1.10Å
C30H302sing1.09Å1.10Å
C31H311sing1.09Å1.10Å
C31H312sing1.09Å1.10Å
C32H322sing1.09Å1.10Å
C32H321sing1.09Å1.10Å
N05H051sing0.97Å1.00Å
N33H331sing1.01Å1.00Å
N33H1sing1.01Å1.00Å
O09H2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O20S17O19110.8°119.2°
O20S17C18108.5°108.6°
O20S17C16111.8°108.6°
O19S17C18111.4°108.6°
O19S17C16107.6°108.6°
C18S17C16106.7°101.9°
S17C18H182109.5°109.4°
S17C18H181109.5°109.5°
S17C18H183109.5°109.4°
S17C16C15111.3°109.5°
S17C16H161109.0°109.5°
S17C16H162109.0°109.5°
C16C15C21119.9°119.9°
C16C15C13120.2°119.8°
C15C16H161109.0°109.5°
C15C16H162109.0°109.5°
C21C15C13119.9°120.3°
C15C21C22120.2°120.2°
C15C21H211119.9°119.9°
C15C13F14122.0°120.0°
C15C13C12120.1°120.1°
F14C13C12117.9°119.9°
C21C22C11119.8°119.9°
C22C21H211119.9°119.9°
C21C22H221120.1°120.1°
C13C12C11119.7°119.8°
C13C12H121120.2°120.1°
C22C11C12120.2°119.7°
C22C11C10122.4°120.1°
C11C22H221120.1°120.1°
C12C11C10117.3°120.1°
C11C12H121120.1°120.1°
C11C10C06126.5°126.8°
C11C10C23128.3°126.8°
O08C07C06115.3°120.0°
O08C07O09122.9°120.1°
C06C07O09120.2°119.9°
C07C06C10128.9°125.5°
C07C06N05120.6°125.5°
C07O09H2109.5°113.9°
C06C10C23105.2°106.5°
C10C06N05110.0°109.0°
C10C23C24134.7°133.6°
C10C23C04106.2°106.4°
C06N05C04110.4°110.1°
C06N05H051124.8°124.9°
C24C23C04119.0°120.0°
C23C24C25119.1°119.8°
C23C24H241120.4°120.1°
C23C04N05108.2°108.0°
C23C04C03122.6°119.2°
C24C25C26120.9°120.5°
C25C24H241120.4°120.1°
C24C25H251119.5°119.8°
N05C04C03129.2°132.8°
C04N05H051124.8°124.9°
C04C03C26117.6°119.8°
C04C03C02118.6°120.1°
C25C26C03120.7°120.7°
C26C25H251119.6°119.8°
C25C26H261119.7°119.6°
O36C35O34125.5°123.1°
O36C35N27125.5°123.1°
C26C03C02123.7°120.1°
C03C26H261119.7°119.6°
C03C02N27109.6°109.5°
C03C02C01110.3°109.5°
C03C02H021107.8°109.5°
O34C35N27109.1°113.8°
C35O34C29107.4°109.5°
C35N27C02118.5°125.6°
C35N27C28110.2°108.9°
O34C29C30108.5°110.6°
O34C29C28105.5°104.0°
O34C29H291109.9°110.5°
N27C02C01112.3°109.4°
C02N27C28131.0°125.6°
N27C02H021108.7°109.5°
C02C01H013109.5°109.5°
C02C01H011109.5°109.5°
C02C01H012109.5°109.5°
C01C02H021107.9°109.5°
N27C28C29102.8°103.9°
N27C28H281111.1°110.6°
N27C28H282111.1°110.6°
C29C30C31112.2°109.5°
C30C29C28114.3°110.5°
C30C29H291109.3°110.5°
C29C30H301108.8°109.5°
C29C30H302108.8°109.5°
C30C31C32112.7°109.5°
C31C30H301108.8°109.5°
C31C30H302108.8°109.5°
C30C31H311108.6°109.5°
C30C31H312108.7°109.5°
C29C28H281111.1°110.6°
C29C28H282111.1°110.5°
C28C29H291109.3°110.5°
C31C32N33111.4°109.5°
C32C31H311108.7°109.5°
C32C31H312108.6°109.5°
C31C32H322109.0°109.5°
C31C32H321109.0°109.5°
N33C32H322109.0°109.5°
N33C32H321109.0°109.5°
C32N33H331109.5°111.0°
C32N33H1109.5°111.0°
H013C01H011109.5°109.4°
H013C01H012109.5°109.5°
H011C01H012109.5°109.5°
H161C16H162109.5°109.4°
H182C18H181109.5°109.5°
H182C18H183109.5°109.5°
H181C18H183109.5°109.5°
H281C28H282109.5°110.4°
H301C30H302109.5°109.5°
H311C31H312109.5°109.5°
H322C32H321109.5°109.5°
H331N33H1109.4°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O20S17O19C18120.8°125.0°
O20S17O19C16122.5°125.0°
O20S17C18C16120.7°114.6°
O20S17C16C15176.8°65.5°
O20S17C16H16156.5°54.5°
O20S17C16H16263.0°174.5°
O20S17C18H182180.0°54.5°
O20S17C18H18160.0°174.5°
O20S17C18H18360.0°65.5°
O19S17C18C16117.2°114.5°
O19S17C16C1554.9°65.5°
O19S17C16H16165.4°174.5°
O19S17C16H162175.1°54.5°
O19S17C18H18257.8°174.5°
O19S17C18H181177.8°54.5°
O19S17C18H18362.2°65.5°
C18S17C16C1564.7°180.0°
C18S17C16H161175.0°60.0°
C18S17C16H16255.5°59.9°
S17C18H182H181120.0°120.0°
S17C18H182H183120.0°119.9°
S17C18H181H183120.0°120.0°
S17C16C15H161120.3°120.0°
S17C16C15H162120.3°120.0°
S17C16C15C2188.0°90.0°
S17C16C15C1393.6°89.7°
S17C16H161H162119.2°120.0°
C16S17C18H18259.4°60.0°
C16S17C18H18160.7°60.0°
C16S17C18H183179.4°180.0°
C16C15C21C13178.3°179.7°
C16C15C13F141.2°0.2°
C16C15C21C22179.5°179.9°
C16C15C13C12179.0°179.7°
C15C16H161H162119.2°120.0°
C16C15C21H2110.5°0.3°
C21C15C13F14179.5°179.9°
C15C21C22H211180.0°179.6°
C21C15C13C120.6°0.0°
C15C21C22C110.2°0.6°
C21C15C16H16132.2°150.0°
C21C15C16H162151.7°30.0°
C15C21C22H221179.8°180.0°
C15C13F14C12179.9°179.9°
C13C15C21C221.2°0.3°
C15C13C12C110.8°0.0°
C15C13C12H121179.2°179.9°
C13C15C16H161146.1°30.3°
C13C15C16H16226.6°150.3°
C13C15C21H211178.8°180.0°
F14C13C12C11179.1°180.0°
F14C13C12H1210.9°0.0°
C21C22C11H221180.0°179.4°
C21C22C11C121.2°0.6°
C21C22C11C10179.6°179.7°
C13C12C11C221.8°0.3°
C13C12C11H121180.0°180.0°
C13C12C11C10179.8°180.0°
C22C11C12C10178.4°179.7°
C22C11C10C06139.8°115.3°
C22C11C10C2343.4°65.0°
C22C11C12H121178.2°179.8°
C11C22C21H211179.8°179.7°
C12C11C10C0641.8°65.0°
C12C11C10C23135.0°114.7°
C12C11C22H221178.8°180.0°
C11C10C06C079.3°0.3°
C11C10C06C23177.4°179.7°
C11C10C06N05179.0°179.7°
C11C10C23C242.2°0.3°
C11C10C23C04179.0°179.7°
C10C11C12H1210.2°0.0°
C10C11C22H2210.4°0.3°
O08C07C06O09165.8°180.0°
O08C07C06C1038.0°0.0°
O08C07C06N05132.9°180.0°
O08C07O09H20.0°0.0°
C07C06C10N05171.7°180.0°
C07C06C10C23173.3°180.0°
C07C06N05C04173.4°180.0°
C07C06N05H0516.5°0.0°
C06C07O09H2164.7°180.0°
O09C07C06C10156.2°180.0°
O09C07C06N0532.9°0.0°
C06C10C23C24179.5°179.9°
C06C10C23C041.7°0.0°
C10C06N05C040.9°0.0°
C10C06N05H051179.1°180.0°
C23C10C06N051.6°0.0°
C10C23C24C04178.7°179.9°
C10C23C24C25180.0°180.0°
C10C23C04N051.2°0.0°
C10C23C04C03179.7°179.9°
C10C23C24H2410.0°0.0°
C06N05C04C230.2°0.0°
C06N05C04H051180.0°180.0°
C06N05C04C03178.6°179.9°
C23C24C25H241180.0°180.0°
C24C23C04N05179.7°179.9°
C24C23C04C031.2°0.0°
C23C24C25C260.6°0.0°
C23C24C25H251179.4°180.0°
C04C23C24C251.2°0.0°
C23C04N05C03178.3°179.9°
C23C04C03C260.5°0.0°
C23C04C03C02177.7°180.0°
C04C23C24H241178.8°179.9°
C23C04N05H051179.8°180.0°
C24C25C26H251180.0°180.0°
C24C25C26C030.1°0.0°
C24C25C26H261179.9°179.9°
N05C04C03C26178.7°179.9°
N05C04C03C020.4°0.1°
C04C03C26C250.1°0.0°
C04C03C26C02178.2°180.0°
C04C03C02N27100.6°75.8°
C04C03C02C01135.2°164.3°
C04C03C02H02117.5°44.2°
C04C03C26H261179.9°180.0°
C03C04N05H0511.5°0.1°
C25C26C03H261180.0°180.0°
C25C26C03C02178.3°180.0°
C26C25C24H241179.4°179.9°
O36C35O34N27179.5°180.0°
O36C35O34C29172.5°180.0°
O36C35N27C021.8°0.0°
O36C35N27C28172.4°179.9°
C26C03C02N2781.2°104.3°
C26C03C02C0143.0°15.7°
C26C03C02H021160.6°135.7°
C03C26C25H251179.9°180.0°
C03C02N27C3584.5°58.1°
C03C02N27C01123.0°120.0°
C03C02N27H021117.6°120.0°
C03C02C01H021117.6°120.0°
C03C02N27C2888.3°121.7°
C03C02C01H013180.0°60.1°
C03C02C01H01160.0°180.0°
C03C02C01H01260.0°60.0°
C02C03C26H2611.7°0.1°
O34C35N27C02177.6°180.0°
O34C35N27C288.1°0.1°
C35O34C29C30141.1°118.6°
C35O34C29C2818.3°0.1°
C35O34C29H29199.4°118.7°
N27C35O34C296.9°0.0°
C35N27C02C28172.9°179.9°
C35N27C02C01152.4°61.9°
C35N27C28C2918.8°0.1°
C35N27C02H02133.1°178.1°
C35N27C28H281100.2°118.5°
C35N27C28H282137.7°118.8°
O34C29C28N2722.2°0.1°
O34C29C30C28117.4°114.6°
O34C29C30H291119.9°122.7°
O34C29C30C31163.0°70.4°
O34C29C28H291118.1°118.6°
O34C29C28H28196.7°118.6°
O34C29C28H282141.1°118.8°
O34C29C30H30142.6°49.7°
O34C29C30H30276.7°169.6°
N27C02C01H021119.8°120.0°
C02N27C28C29167.9°180.0°
N27C02C01H01357.4°180.0°
N27C02C01H01162.6°60.0°
N27C02C01H012177.4°60.0°
C02N27C28H28173.2°61.3°
C02N27C28H28249.0°61.3°
C01C02N27C2834.7°118.3°
C02C01H013H011120.0°120.0°
C02C01H013H012120.0°120.1°
C02C01H011H012120.0°120.0°
N27C28C29C30141.3°118.6°
N27C28C29H281118.9°118.7°
N27C28C29H282118.9°118.7°
C28N27C02H021154.0°1.7°
N27C28H281H282123.1°122.8°
N27C28C29H29195.9°118.7°
C29C30C31H301120.4°120.0°
C29C30C31H302120.4°120.0°
C30C29C28H291122.8°122.6°
C29C30C31C32162.8°180.0°
C30C29C28H28122.4°122.6°
C30C29C28H28299.7°0.0°
C29C30H301H302118.8°120.0°
C29C30C31H31176.7°60.0°
C29C30C31H31242.3°60.0°
C31C30C29C2879.7°175.0°
C30C31C32H311120.5°120.0°
C30C31C32H312120.5°120.0°
C30C31C32N33150.9°180.0°
C31C30C29H29143.1°52.4°
C31C30H301H302118.7°120.0°
C30C31H311H312118.5°120.0°
C30C31C32H32288.9°60.0°
C30C31C32H32130.6°60.0°
C29C28H281H282123.1°122.7°
C28C29C30H301159.9°65.0°
C28C29C30H30240.7°55.0°
C31C32N33H322120.3°120.0°
C31C32N33H321120.3°120.0°
C32C31C30H30142.4°60.0°
C32C31C30H30276.8°60.0°
C32C31H311H312118.5°120.0°
C31C32H322H321119.1°120.0°
C31C32N33H331180.0°56.1°
C31C32N33H160.0°180.0°
N33C32C31H31130.4°60.0°
N33C32C31H31288.7°60.0°
N33C32H322H321119.1°120.0°
C32N33H331H1120.0°123.9°
H013C01H011H012120.0°120.0°
H013C01C02H02162.4°60.0°
H011C01C02H021177.6°60.0°
H012C01C02H02157.6°180.0°
H182C18H181H183120.0°120.0°
H211C21C22H2210.2°0.3°
H241C24C25H2510.6°0.0°
H251C25C26H2610.1°0.0°
H281C28C29H291145.2°0.0°
H282C28C29H29123.0°122.6°
H291C29C30H30177.3°172.4°
H291C29C30H302163.5°67.6°
H301C30C31H311162.9°180.0°
H301C30C31H31278.1°60.0°
H302C30C31H31143.7°60.0°
H302C30C31H312162.7°180.0°
H311C31C32H322150.7°180.0°
H311C31C32H32189.9°60.0°
H312C31C32H32231.6°60.0°
H312C31C32H321151.0°180.0°
H322C32N33H33159.7°63.9°
H322C32N33H1179.7°60.0°
H321C32N33H33159.7°176.1°
H321C32N33H160.3°60.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon