YV4
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C02 | N01 | sing | 1.47Å | 1.48Å | |
| C03 | C02 | sing | 1.55Å | 1.31Å | |
| C04 | C03 | sing | 1.54Å | 1.58Å | |
| N05 | C04 | sing | 1.47Å | 1.53Å | |
| C06 | N05 | sing | 1.34Å | 1.34Å | |
| O07 | C06 | doub | 1.21Å | 1.19Å | |
| C02 | C06 | sing | 1.51Å | 1.62Å | |
| N01 | H012 | sing | 1.01Å | 1.00Å | |
| N01 | H1 | sing | 1.01Å | 1.00Å | |
| C02 | H021 | sing | 1.09Å | 1.10Å | |
| C03 | H032 | sing | 1.09Å | 1.10Å | |
| C03 | H031 | sing | 1.09Å | 1.10Å | |
| C04 | H042 | sing | 1.09Å | 1.10Å | |
| C04 | H041 | sing | 1.09Å | 1.10Å | |
| N05 | H051 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N01 | C02 | C03 | 118.6° | 110.5° |
| N01 | C02 | C06 | 103.2° | 110.5° |
| C02 | N01 | H012 | 109.5° | 111.1° |
| C02 | N01 | H1 | 109.5° | 111.1° |
| N01 | C02 | H021 | 109.6° | 110.5° |
| C02 | C03 | C04 | 101.5° | 101.8° |
| C03 | C02 | C06 | 104.0° | 104.1° |
| C03 | C02 | H021 | 112.4° | 110.6° |
| C02 | C03 | H032 | 111.4° | 110.9° |
| C02 | C03 | H031 | 111.4° | 111.0° |
| C03 | C04 | N05 | 102.4° | 105.5° |
| C04 | C03 | H032 | 111.4° | 111.0° |
| C04 | C03 | H031 | 111.5° | 111.0° |
| C03 | C04 | H042 | 111.2° | 110.2° |
| C03 | C04 | H041 | 111.2° | 110.2° |
| C04 | N05 | C06 | 106.5° | 111.3° |
| N05 | C04 | H042 | 111.2° | 110.2° |
| N05 | C04 | H041 | 111.2° | 110.3° |
| C04 | N05 | H051 | 126.8° | 124.3° |
| N05 | C06 | O07 | 127.2° | 124.9° |
| N05 | C06 | C02 | 106.7° | 110.2° |
| C06 | N05 | H051 | 126.8° | 124.4° |
| O07 | C06 | C02 | 126.1° | 124.9° |
| C06 | C02 | H021 | 107.9° | 110.5° |
| H012 | N01 | H1 | 109.4° | 110.9° |
| H032 | C03 | H031 | 109.4° | 110.8° |
| H042 | C04 | H041 | 109.4° | 110.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N01 | C02 | C03 | C06 | 113.9° | 118.6° |
| N01 | C02 | C03 | H021 | 129.6° | 122.7° |
| N01 | C02 | C03 | C04 | 155.7° | 143.4° |
| N01 | C02 | C06 | N05 | 156.6° | 134.9° |
| N01 | C02 | C06 | O07 | 23.2° | 45.0° |
| N01 | C02 | C06 | H021 | 116.0° | 122.6° |
| C02 | N01 | H012 | H1 | 120.0° | 124.1° |
| N01 | C02 | C03 | H032 | 85.6° | 98.4° |
| N01 | C02 | C03 | H031 | 37.0° | 25.2° |
| C02 | C03 | C04 | H032 | 118.7° | 118.1° |
| C02 | C03 | C04 | H031 | 118.7° | 118.2° |
| C02 | C03 | C04 | N05 | 40.1° | 25.4° |
| C03 | C02 | C06 | N05 | 32.1° | 16.3° |
| C03 | C02 | C06 | O07 | 147.6° | 163.7° |
| C03 | C02 | C06 | H021 | 119.6° | 118.8° |
| C03 | C02 | N01 | H012 | 180.0° | 176.2° |
| C03 | C02 | N01 | H1 | 60.0° | 52.2° |
| C02 | C03 | H032 | H031 | 123.7° | 123.7° |
| C02 | C03 | C04 | H042 | 78.8° | 93.6° |
| C02 | C03 | C04 | H041 | 159.0° | 144.5° |
| C03 | C04 | N05 | H042 | 118.9° | 119.0° |
| C03 | C04 | N05 | H041 | 118.9° | 119.0° |
| C03 | C04 | N05 | C06 | 19.3° | 17.0° |
| C04 | C03 | C02 | C06 | 41.8° | 24.8° |
| C04 | C03 | C02 | H021 | 74.7° | 93.9° |
| C04 | C03 | H032 | H031 | 123.7° | 123.9° |
| C03 | C04 | H042 | H041 | 123.2° | 121.9° |
| C03 | C04 | N05 | H051 | 160.7° | 163.0° |
| C04 | N05 | C06 | H051 | 180.0° | 180.0° |
| C04 | N05 | C06 | O07 | 175.4° | 179.7° |
| C04 | N05 | C06 | C02 | 4.3° | 0.4° |
| N05 | C04 | C03 | H032 | 158.8° | 143.5° |
| N05 | C04 | C03 | H031 | 78.6° | 92.7° |
| N05 | C04 | H042 | H041 | 123.3° | 122.0° |
| N05 | C06 | O07 | C02 | 179.6° | 179.9° |
| N05 | C06 | C02 | H021 | 87.5° | 102.5° |
| C06 | N05 | C04 | H042 | 99.6° | 102.0° |
| C06 | N05 | C04 | H041 | 138.2° | 136.0° |
| O07 | C06 | C02 | H021 | 92.8° | 77.6° |
| O07 | C06 | N05 | H051 | 4.6° | 0.3° |
| C06 | C02 | N01 | H012 | 65.6° | 61.5° |
| C06 | C02 | N01 | H1 | 54.4° | 62.5° |
| C06 | C02 | C03 | H032 | 160.5° | 143.0° |
| C06 | C02 | C03 | H031 | 76.9° | 93.4° |
| C02 | C06 | N05 | H051 | 175.7° | 179.6° |
| H012 | N01 | C02 | H021 | 49.1° | 61.1° |
| H1 | N01 | C02 | H021 | 169.1° | 174.9° |
| H021 | C02 | C03 | H032 | 44.0° | 24.3° |
| H021 | C02 | C03 | H031 | 166.6° | 147.9° |
| H032 | C03 | C04 | H042 | 39.9° | 24.5° |
| H032 | C03 | C04 | H041 | 82.3° | 97.4° |
| H031 | C03 | C04 | H042 | 162.5° | 148.3° |
| H031 | C03 | C04 | H041 | 40.3° | 26.4° |
| H042 | C04 | N05 | H051 | 80.4° | 78.0° |
| H041 | C04 | N05 | H051 | 41.9° | 43.9° |
