Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

YV1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N01C02sing1.45Å1.45Å
C02C03sing1.51Å1.54Å
N01C04sing1.47Å1.43Å
C04C05sing1.53Å1.50Å
C03C06sing1.52Å1.52Å
C05C07sing1.50Å1.51Å
C06C07sing1.59Å1.46Å
C07C08sing1.51Å1.53Å
C08N09sing1.48Å1.45Å
C06C10sing1.58Å1.55Å
N09C10sing1.48Å1.49Å
N01C13sing1.35Å1.49Å
C13O14doub1.22Å1.21Å
C13O15sing1.35Å1.42Å
O15C16sing1.45Å1.42Å
C16C17sing1.51Å1.54Å
C17C18doub1.38Å1.42ÅAromatic
C18C19sing1.38Å1.40ÅAromatic
C19C20doub1.38Å1.38ÅAromatic
C20C21sing1.38Å1.39ÅAromatic
C17C22sing1.38Å1.38ÅAromatic
C21C22doub1.38Å1.39ÅAromatic
C21CL23sing1.74Å1.74Å
C19CL24sing1.74Å1.73Å
N09C25sing1.35Å1.41Å
C25C26sing1.48Å1.52Å
C25O27doub1.22Å1.22Å
C26C28doub1.40Å1.41ÅAromatic
C28C29sing1.36Å1.40ÅAromatic
C26C30sing1.39Å1.39ÅAromatic
C30C31doub1.40Å1.44ÅAromatic
C29C32doub1.39Å1.42ÅAromatic
C31C32sing1.41Å1.39ÅAromatic
C32N33sing1.37Å1.34ÅAromatic
N33N34sing1.40Å1.38ÅAromatic
C31N35sing1.35Å1.35ÅAromatic
N34N35doub1.29Å1.38ÅAromatic
C02H37sing1.09Å1.10Å
C02H36sing1.09Å1.10Å
C04H41sing1.09Å1.10Å
C04H40sing1.09Å1.10Å
C05H42sing1.09Å1.10Å
C05H43sing1.09Å1.10Å
C06H11sing1.09Å1.10Å
C07H12sing1.09Å1.10Å
C10H47sing1.09Å1.10Å
C10H46sing1.09Å1.10Å
C16H48sing1.09Å1.10Å
C16H49sing1.09Å1.10Å
C18H50sing1.08Å1.08Å
C20H51sing1.08Å1.08Å
C22H52sing1.08Å1.08Å
C28H53sing1.08Å1.08Å
C03H38sing1.09Å1.10Å
C03H39sing1.09Å1.10Å
C08H44sing1.09Å1.10Å
C08H45sing1.09Å1.10Å
C29H54sing1.08Å1.08Å
C30H55sing1.08Å1.08Å
N33H56sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N01C02C03112.1°110.8°
C02N01C04128.3°118.2°
C02N01C13111.5°120.9°
N01C02H37108.8°109.2°
N01C02H36108.8°109.1°
C02C03C06114.2°115.9°
C03C02H37108.8°109.3°
C03C02H36108.8°109.2°
C02C03H38108.3°108.2°
C02C03H39108.3°108.2°
N01C04C05106.7°111.6°
C04N01C13116.2°120.9°
N01C04H41110.2°109.0°
N01C04H40110.2°109.0°
C04C05C07104.8°113.8°
C05C04H41110.1°109.1°
C05C04H40110.2°109.1°
C04C05H42110.6°108.6°
C04C05H43110.6°108.7°
C03C06C07115.6°107.2°
C03C06C10116.2°101.8°
C03C06H11107.4°116.5°
C06C03H38108.3°108.1°
C06C03H39108.3°108.2°
C05C07C06112.9°110.5°
C05C07C08111.1°122.6°
C07C05H42110.6°108.6°
C07C05H43110.6°108.6°
C05C07H12108.2°107.1°
C06C07C08107.5°102.8°
C07C06C10101.8°95.2°
C07C06H11108.2°116.4°
C06C07H12109.0°106.3°
C07C08N09102.3°104.7°
C08C07H12108.0°106.4°
C07C08H44111.2°110.4°
C07C08H45111.2°110.4°
C08N09C10111.0°108.3°
C08N09C25126.3°125.9°
N09C08H44111.2°110.4°
N09C08H45111.2°110.3°
C06C10N09104.2°102.9°
C10C06H11107.1°116.9°
C06C10H47110.8°110.7°
C06C10H46110.8°110.8°
C10N09C25122.6°125.8°
N09C10H47110.8°110.7°
N09C10H46110.8°110.7°
N01C13O14120.1°120.0°
N01C13O15117.6°120.0°
O14C13O15119.8°120.0°
C13O15C16122.4°117.0°
O15C16C17113.1°109.5°
O15C16H48108.6°109.5°
O15C16H49108.6°109.5°
C16C17C18121.2°120.0°
C16C17C22119.4°120.0°
C17C16H48108.6°109.4°
C17C16H49108.6°109.4°
C17C18C19119.4°120.0°
C18C17C22119.4°120.0°
C17C18H50120.3°120.0°
C18C19C20122.3°120.0°
C18C19CL24122.6°120.0°
C19C18H50120.3°120.1°
C19C20C21115.9°120.0°
C20C19CL24115.0°120.0°
C19C20H51122.0°120.0°
C20C21C22124.3°120.0°
C20C21CL23117.3°120.0°
C21C20H51122.0°120.0°
C17C22C21118.6°120.0°
C17C22H52120.7°120.0°
C22C21CL23118.4°120.0°
C21C22H52120.7°120.0°
N09C25C26125.7°120.0°
N09C25O27115.0°120.0°
C26C25O27119.2°120.0°
C25C26C28118.9°119.9°
C25C26C30119.5°119.8°
C26C28C29121.5°120.5°
C28C26C30121.5°120.3°
C26C28H53119.2°119.8°
C28C29C32117.4°120.1°
C29C28H53119.3°119.7°
C28C29H54121.3°119.9°
C26C30C31117.1°119.5°
C26C30H55121.4°120.2°
C30C31C32120.9°119.4°
C30C31N35131.4°133.1°
C31C30H55121.4°120.3°
C29C32C31121.5°120.2°
C29C32N33130.0°133.7°
C32C29H54121.3°120.0°
C31C32N33108.5°106.1°
C32C31N35107.7°107.6°
C32N33N34108.1°106.7°
C32N33H56126.0°126.6°
N33N34N35107.7°109.5°
N34N33H56125.9°126.7°
C31N35N34108.0°110.2°
H37C02H36109.5°109.2°
H41C04H40109.5°109.0°
H42C05H43109.5°108.4°
H47C10H46109.4°110.8°
H48C16H49109.4°109.5°
H38C03H39109.5°108.0°
H44C08H45109.5°110.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N01C02C03H37120.4°120.3°
N01C02C03H36120.4°120.2°
C02N01C04C13155.5°179.9°
C02N01C04C0564.1°39.9°
N01C02C03C0653.0°77.7°
C02N01C13O1429.1°5.1°
C02N01C13O15169.2°175.0°
N01C02H37H36118.8°119.3°
C02N01C04H41176.4°80.7°
C02N01C04H4055.5°160.4°
N01C02C03H38173.7°160.7°
N01C02C03H3967.7°44.0°
C03C02N01C0432.1°91.7°
C02C03C06H38120.7°121.6°
C02C03C06H39120.7°121.7°
C02C03C06C0786.7°59.2°
C02C03C06C10154.0°158.5°
C03C02N01C13124.3°88.2°
C03C02H37H36118.8°119.4°
C02C03C06H1134.1°73.1°
C02C03H38H39117.8°116.9°
N01C04C05H41119.6°120.5°
N01C04C05H40119.6°120.5°
N01C04C05C0799.1°43.3°
C04N01C13O14171.3°175.0°
C04N01C13O159.6°4.9°
C04N01C02H3788.3°28.7°
C04N01C02H36152.6°148.0°
N01C04H41H40121.3°118.9°
N01C04C05H4220.1°164.4°
N01C04C05H43141.6°77.8°
C04C05C07H42119.2°121.1°
C04C05C07H43119.3°121.2°
C04C05C07C0656.4°95.1°
C04C05C07C08177.3°26.3°
C05C04N01C1391.5°140.1°
C05C04H41H40121.3°119.0°
C04C05H42H43122.2°117.9°
C04C05C07H1264.3°149.4°
C03C06C07C0532.8°76.4°
C03C06C07C10126.9°104.0°
C03C06C07H11120.4°132.5°
C03C06C07C0890.1°56.0°
C03C06C10H11120.0°128.1°
C03C06C10N0998.6°63.0°
C06C03C02H3767.4°42.6°
C06C03C02H36173.4°162.1°
C03C06C07H12153.0°167.6°
C03C06C10H47142.2°178.7°
C03C06C10H4620.6°55.3°
C06C03H38H39117.8°116.9°
C05C07C06C08122.9°132.4°
C05C07C06H12120.2°115.9°
C05C07C08H12118.5°123.5°
C05C07C08N09155.4°158.2°
C05C07C06C10159.7°179.5°
C07C05C04H41141.3°163.9°
C07C05C04H4020.4°77.2°
C07C05H42H43122.2°117.8°
C05C07C06H1187.6°56.1°
C05C07C08H4436.5°39.3°
C05C07C08H4585.8°83.0°
C06C07C08H12117.5°111.6°
C06C07C08N0931.4°33.3°
C07C06C10H11113.5°123.1°
C07C06C10N0928.0°45.8°
C06C07C05H4262.9°143.8°
C06C07C05H43175.6°26.1°
C07C06C10H4791.2°72.5°
C07C06C10H46147.1°164.1°
C07C06C03H38152.6°179.2°
C07C06C03H3934.0°62.5°
C06C07C08H4487.5°85.6°
C06C07C08H45150.2°152.0°
C07C08N09H44118.9°118.8°
C07C08N09H45118.8°118.8°
C08C07C06C1036.8°48.0°
C07C08N09C1012.3°3.1°
C07C08N09C25167.4°177.0°
C08C07C05H4258.1°94.8°
C08C07C05H4363.4°147.4°
C08C07C06H11149.5°171.5°
C07C08H44H45123.3°122.4°
C08N09C10C069.4°28.5°
C08N09C10C25179.7°180.0°
C08N09C25C262.6°174.2°
C08N09C25O27180.0°5.8°
N09C08C07H1286.1°78.3°
C08N09C10H47109.8°89.9°
C08N09C10H46128.6°146.9°
N09C08H44H45123.3°122.3°
C06C10N09H47119.2°118.3°
C06C10N09H46119.2°118.4°
C06C10N09C25170.9°151.5°
C10C06C07H1280.1°63.6°
C06C10H47H46122.4°123.3°
C10C06C03H3833.3°79.9°
C10C06C03H3985.3°36.8°
C10N09C25C26177.7°5.8°
C10N09C25O270.4°174.1°
N09C10C06H11141.4°168.8°
N09C10H47H46122.4°123.2°
C10N09C08H44106.6°115.7°
C10N09C08H45131.1°121.9°
N01C13O14O15161.3°179.9°
N01C13O15C16168.3°175.0°
C13N01C02H37115.3°151.4°
C13N01C02H363.9°32.0°
C13N01C04H4128.1°99.4°
C13N01C04H40149.0°19.5°
O14C13O15C166.6°5.0°
C13O15C16C17169.4°175.0°
C13O15C16H4870.1°65.0°
C13O15C16H4948.8°55.0°
O15C16C17H48120.6°120.0°
O15C16C17H49120.6°120.0°
O15C16C17C18143.0°85.0°
O15C16C17C2240.2°95.2°
O15C16H48H49118.3°120.1°
C16C17C18C22176.8°179.8°
C16C17C18C19179.2°180.0°
C16C17C22C21179.5°179.7°
C17C16H48H49118.3°119.9°
C16C17C18H500.7°0.1°
C16C17C22H520.5°0.0°
C17C18C19H50180.0°180.0°
C17C18C19C201.0°0.0°
C18C17C22C213.6°0.5°
C17C18C19CL24176.4°180.0°
C18C17C16H4822.4°155.0°
C18C17C16H4996.5°35.0°
C18C17C22H52176.3°179.8°
C18C19C20CL24175.7°179.9°
C18C19C20C212.9°0.0°
C19C18C17C222.4°0.2°
C18C19C20H51177.1°180.0°
C19C20C21H51180.0°180.0°
C19C20C21C221.6°0.2°
C19C20C21CL23179.1°179.9°
C20C19C18H50179.0°180.0°
C20C21C22C171.6°0.5°
C20C21C22CL23179.2°179.7°
C21C20C19CL24178.6°180.0°
C20C21C22H52178.3°179.8°
C17C22C21H52180.0°179.7°
C17C22C21CL23177.6°179.8°
C22C17C16H48160.8°24.8°
C22C17C16H4980.3°144.8°
C22C17C18H50177.5°179.8°
C22C21C20H51178.4°179.8°
CL23C21C20H510.9°0.0°
CL23C21C22H522.4°0.1°
CL24C19C18H503.7°0.0°
CL24C19C20H511.4°0.0°
N09C25C26O27177.3°180.0°
N09C25C26C2850.9°155.4°
N09C25C26C30131.9°24.9°
C25N09C10H4769.9°90.2°
C25N09C10H4651.7°33.1°
C25N09C08H4473.7°64.2°
C25N09C08H4548.6°58.2°
C25C26C28C30177.2°179.7°
C25C26C28C29176.4°180.0°
C25C26C30C31177.3°180.0°
C25C26C28H533.6°0.0°
C25C26C30H552.6°0.0°
O27C25C26C28126.4°24.6°
O27C25C26C3050.9°155.2°
C26C28C29H53180.0°180.0°
C28C26C30C310.1°0.2°
C26C28C29C321.7°0.0°
C26C28C29H54178.3°180.0°
C28C26C30H55179.8°179.7°
C29C28C26C300.8°0.2°
C28C29C32H54180.0°179.9°
C28C29C32C311.8°0.4°
C28C29C32N33178.4°180.0°
C26C30C31H55180.0°179.9°
C26C30C31C320.1°0.1°
C26C30C31N35179.6°179.9°
C30C26C28H53179.2°179.7°
C30C31C32C291.0°0.4°
C30C31C32N35179.7°179.9°
C30C31C32N33179.2°179.9°
C30C31N35N34179.9°179.5°
C29C32C31N33179.8°179.7°
C29C32N33N34178.5°180.0°
C29C32C31N35178.7°179.7°
C32C29C28H53178.2°180.0°
C29C32N33H561.5°0.1°
C31C32N33N341.3°0.3°
C32C31N35N340.5°0.3°
C31C32C29H54178.2°179.7°
C32C31C30H55179.9°180.0°
C31C32N33H56178.7°179.8°
C32N33N34H56180.0°179.9°
N33C32C31N351.1°0.0°
C32N33N34N351.0°0.5°
N33C32C29H541.6°0.1°
N33N34N35C310.3°0.5°
N35C31C30H550.3°0.1°
N35N34N33H56179.0°179.6°
H37C02C03H3853.3°78.9°
H37C02C03H39171.9°164.3°
H36C02C03H3865.9°40.5°
H36C02C03H3952.7°76.3°
H41C04C05H4299.5°75.0°
H41C04C05H4322.1°42.7°
H40C04C05H42139.7°43.9°
H40C04C05H4398.8°161.7°
H42C05C07H12176.5°28.3°
H43C05C07H1255.0°89.4°
H11C06C07H1232.6°59.9°
H11C06C10H4722.3°50.5°
H11C06C10H4699.4°72.8°
H11C06C03H3886.6°48.4°
H11C06C03H39154.8°165.2°
H12C07C08H44155.0°162.9°
H12C07C08H4532.7°40.5°
H53C28C29H541.7°0.1°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon