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YUD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O41C40sing1.43Å1.36Å
C36C40sing1.54Å1.51Å
C36C37sing1.54Å1.52Å
C40C39sing1.51Å1.48Å
C39C01doub1.38Å1.52ÅAromatic
C39C38sing1.38Å1.48ÅAromatic
C01C02sing1.38Å1.53ÅAromatic
C34C42sing1.53Å1.56Å
C34C33sing1.53Å1.51Å
C37C38sing1.51Å1.54Å
C38C04doub1.38Å1.53ÅAromatic
O12C11sing1.43Å1.39Å
C02C03doub1.38Å1.51ÅAromatic
C09C33sing1.53Å1.56Å
C09N08sing1.46Å1.47Å
C33C35sing1.53Å1.52Å
C10C11sing1.53Å1.52Å
C10N08sing1.46Å1.51Å
C11C13sing1.53Å1.53Å
C04C03sing1.38Å1.52ÅAromatic
C03S05sing1.76Å1.81Å
N08S05sing1.66Å1.70Å
S05O06doub1.42Å1.44Å
S05O07doub1.42Å1.46Å
C13C26sing1.53Å1.53Å
C13N14sing1.46Å1.44Å
C26C27sing1.51Å1.53Å
N14C15sing1.35Å1.48Å
C27C32doub1.38Å1.48ÅAromatic
C27C28sing1.38Å1.52ÅAromatic
C15O17sing1.35Å1.43Å
C15O16doub1.21Å1.18Å
C32C31sing1.38Å1.49ÅAromatic
O17C18sing1.45Å1.42Å
O20C19sing1.44Å1.37Å
O20C22sing1.44Å1.55Å
C19C18sing1.55Å1.63Å
C28C29doub1.38Å1.50ÅAromatic
C18C21sing1.55Å1.32Å
O25C24sing1.44Å1.61Å
O25C22sing1.44Å1.24Å
C24C23sing1.55Å1.31Å
C31C30doub1.38Å1.49ÅAromatic
C22C21sing1.55Å1.58Å
C23C21sing1.55Å1.48Å
C29C30sing1.38Å1.48ÅAromatic
C10H102sing1.09Å1.10Å
C10H101sing1.09Å1.10Å
C13H131sing1.09Å1.10Å
C21H211sing1.09Å1.10Å
C22H221sing1.09Å1.10Å
C24H241sing1.09Å1.10Å
C24H242sing1.09Å1.10Å
C26H261sing1.09Å1.10Å
C26H262sing1.09Å1.10Å
C28H281sing1.08Å1.08Å
C01H011sing1.08Å1.08Å
C02H021sing1.08Å1.08Å
C04H041sing1.08Å1.08Å
C09H091sing1.09Å1.10Å
C09H092sing1.09Å1.10Å
C11H111sing1.09Å1.10Å
C18H181sing1.09Å1.10Å
C19H192sing1.09Å1.10Å
C19H191sing1.09Å1.10Å
C23H232sing1.09Å1.10Å
C23H231sing1.09Å1.10Å
C29H291sing1.08Å1.08Å
C30H301sing1.08Å1.08Å
C31H311sing1.08Å1.08Å
C32H321sing1.08Å1.08Å
C33H331sing1.09Å1.10Å
C34H341sing1.09Å1.10Å
C34H342sing1.09Å1.10Å
C35H351sing1.09Å1.10Å
C35H353sing1.09Å1.10Å
C35H352sing1.09Å1.10Å
C36H361sing1.09Å1.10Å
C36H362sing1.09Å1.10Å
C37H371sing1.09Å1.10Å
C37H372sing1.09Å1.10Å
C40H401sing1.09Å1.10Å
C42H421sing1.09Å1.10Å
C42H422sing1.09Å1.10Å
C42H423sing1.09Å1.10Å
N14H141sing0.97Å1.00Å
O12H121sing0.97Å0.95Å
O41H411sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O41C40C36111.3°110.3°
O41C40C39105.4°110.8°
O41C40H401112.5°110.3°
C40O41H411109.5°114.0°
C40C36C37106.7°102.6°
C36C40C39106.9°105.2°
C40C36H361110.2°110.8°
C40C36H362110.2°110.8°
C36C40H401110.1°110.3°
C36C37C38104.1°105.3°
C37C36H361110.2°110.3°
C37C36H362110.2°111.2°
C36C37H371110.8°110.3°
C36C37H372110.8°110.3°
C40C39C01130.7°130.4°
C40C39C38108.2°109.7°
C39C40H401110.5°109.9°
C01C39C38121.0°119.9°
C39C01C02120.3°120.2°
C39C01H011119.9°119.9°
C39C38C37108.5°109.8°
C39C38C04120.9°119.8°
C01C02C03117.0°119.9°
C02C01H011119.9°119.9°
C01C02H021121.5°120.0°
C42C34C33110.0°109.5°
C42C34H341109.3°109.4°
C42C34H342109.3°109.5°
C34C42H421109.5°109.5°
C34C42H422109.5°109.4°
C34C42H423109.5°109.5°
C34C33C09109.6°109.5°
C34C33C35112.4°109.4°
C34C33H331108.4°109.5°
C33C34H341109.3°109.5°
C33C34H342109.3°109.5°
C37C38C04130.5°130.4°
C38C37H371110.8°109.9°
C38C37H372110.8°110.7°
C38C04C03117.2°120.2°
C38C04H041121.4°119.9°
O12C11C10109.0°109.4°
O12C11C13110.4°109.5°
O12C11H111111.3°109.5°
C11O12H121109.5°114.0°
C02C03C04123.5°120.0°
C02C03S05119.7°120.0°
C03C02H021121.5°120.1°
C33C09N08112.1°109.5°
C09C33C35110.1°109.5°
C33C09H091108.8°109.4°
C33C09H092108.8°109.5°
C09C33H331107.8°109.5°
C09N08C10123.6°120.0°
C09N08S05112.9°120.0°
N08C09H091108.8°109.5°
N08C09H092108.8°109.5°
C35C33H331108.3°109.5°
C33C35H351109.5°109.4°
C33C35H353109.5°109.5°
C33C35H352109.5°109.5°
C11C10N08109.2°109.4°
C10C11C13107.4°109.5°
C11C10H102109.5°109.4°
C11C10H101109.6°109.5°
C10C11H111109.5°109.5°
C10N08S05113.8°120.0°
N08C10H102109.5°109.5°
N08C10H101109.5°109.5°
C11C13C26111.3°109.5°
C11C13N14106.7°109.5°
C11C13H131110.3°109.5°
C13C11H111109.3°109.5°
C04C03S05116.8°120.1°
C03C04H041121.4°119.9°
C03S05N08105.9°107.2°
C03S05O06108.1°106.4°
C03S05O07110.8°106.4°
N08S05O06109.7°106.4°
N08S05O07107.9°106.4°
O06S05O07114.2°123.1°
C26C13N14106.3°109.4°
C13C26C27107.8°109.5°
C26C13H131110.4°109.5°
C13C26H261109.9°109.5°
C13C26H262109.9°109.5°
C13N14C15123.9°120.0°
N14C13H131111.7°109.5°
C13N14H141118.0°120.0°
C26C27C32118.3°120.0°
C26C27C28122.3°120.0°
C27C26H261109.9°109.5°
C27C26H262109.9°109.5°
N14C15O17114.1°120.0°
N14C15O16120.6°120.0°
C15N14H141118.0°120.0°
C32C27C28119.3°120.0°
C27C32C31120.1°120.0°
C27C32H321120.0°120.0°
C27C28C29120.0°120.0°
C27C28H281120.0°120.0°
O17C15O16125.3°120.1°
C15O17C18119.1°116.9°
C32C31C30120.9°120.0°
C32C31H311119.5°120.0°
C31C32H321119.9°120.0°
O17C18C19102.4°111.0°
O17C18C21112.9°110.8°
O17C18H181112.4°110.7°
C19O20C22110.2°107.1°
O20C19C1899.0°103.7°
O20C19H192112.0°110.9°
O20C19H191112.0°110.2°
O20C22O25110.2°109.3°
O20C22C2199.4°106.8°
O20C22H221110.1°111.1°
C19C18C21104.6°102.3°
C19C18H181109.4°110.9°
C18C19H192112.0°110.6°
C18C19H191112.0°110.6°
C28C29C30120.0°120.0°
C29C28H281120.0°120.0°
C28C29H291120.0°120.1°
C18C21C22108.9°104.2°
C18C21C23112.6°109.3°
C18C21H211112.8°112.8°
C21C18H181114.1°110.9°
C24O25C22105.3°107.4°
O25C24C23109.5°103.7°
O25C24H241109.5°110.8°
O25C24H242109.5°110.3°
O25C22C21111.1°107.0°
O25C22H221115.3°111.2°
C24C23C21106.4°102.1°
C23C24H241109.5°110.6°
C23C24H242109.5°110.6°
C24C23H232110.2°110.9°
C24C23H231110.2°110.8°
C31C30C29119.7°120.0°
C31C30H301120.2°120.1°
C30C31H311119.6°120.0°
C22C21C23102.7°104.1°
C22C21H211109.0°113.0°
C21C22H221109.6°111.2°
C23C21H211110.3°112.8°
C21C23H232110.2°110.5°
C21C23H231110.2°111.3°
C30C29H291120.0°120.0°
C29C30H301120.2°120.0°
H102C10H101109.4°109.5°
H241C24H242109.5°110.6°
H261C26H262109.5°109.4°
H091C09H092109.5°109.5°
H192C19H191109.5°110.6°
H232C23H231109.5°110.9°
H341C34H342109.5°109.5°
H351C35H353109.5°109.4°
H351C35H352109.4°109.5°
H353C35H352109.5°109.5°
H361C36H362109.4°110.9°
H371C37H372109.5°110.3°
H421C42H422109.4°109.5°
H421C42H423109.4°109.5°
H422C42H423109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O41C40C36C39114.6°119.5°
O41C40C36H401125.4°122.1°
O41C40C36C37138.0°145.3°
O41C40C39H401121.7°122.1°
O41C40C39C0144.8°43.6°
O41C40C39C38132.9°135.9°
O41C40C36H361102.5°27.6°
O41C40C36H36218.4°95.9°
C40C36C37H361119.6°118.1°
C40C36C37H362119.6°118.5°
C36C40C39H401119.8°118.7°
C36C40C39C01163.3°162.8°
C36C40C39C3814.5°16.7°
C40C36C37C3822.6°25.9°
C40C36H361H362121.3°123.5°
C40C36C37H37196.6°92.6°
C40C36C37H372141.7°145.3°
C36C40O41H411180.0°180.0°
C37C36C40C3923.3°25.8°
C36C37C38C3914.0°17.0°
C36C37C38H371119.2°118.7°
C36C37C38H372119.1°119.2°
C36C37C38C04166.7°163.3°
C37C36H361H362121.3°123.6°
C36C37H371H372122.5°122.1°
C37C36C40H40196.7°92.6°
C40C39C01C38177.5°179.4°
C40C39C01C02179.7°180.0°
C40C39C38C370.1°0.2°
C40C39C38C04179.3°179.9°
C40C39C01H0110.3°0.3°
C39C40C36H361142.9°91.9°
C39C40C36H36296.2°144.6°
C39C40O41H41164.5°64.0°
C39C01C02H011180.0°179.7°
C01C39C38C37177.9°179.7°
C01C39C38C042.7°0.6°
C39C01C02C030.2°0.3°
C39C01C02H021179.8°179.7°
C01C39C40H40176.9°78.5°
C38C39C01C022.1°0.6°
C39C38C37C04179.3°179.7°
C39C38C04C031.0°0.3°
C38C39C01H011177.9°179.7°
C39C38C04H041179.0°179.7°
C39C38C37H371105.2°101.7°
C39C38C37H372133.1°136.2°
C38C39C40H401105.3°102.0°
C01C02C03H021180.0°180.0°
C01C02C03C042.0°0.0°
C01C02C03S05179.9°180.0°
C42C34C33H341120.1°120.0°
C42C34C33H342120.1°120.0°
C42C34C33C0968.9°175.0°
C42C34C33C3553.9°65.0°
C42C34C33H331173.7°55.0°
C42C34H341H342119.8°120.0°
C34C42H421H422120.0°120.0°
C34C42H421H423120.0°120.0°
C34C42H422H423120.0°119.9°
C34C33C09C35124.2°120.0°
C34C33C09H331117.9°120.0°
C34C33C09N08174.7°175.0°
C34C33C35H331119.8°120.0°
C34C33C09H09154.3°55.0°
C34C33C09H09265.0°64.9°
C33C34H341H342119.7°120.0°
C34C33C35H351180.0°180.0°
C34C33C35H35360.0°60.0°
C34C33C35H35260.0°60.0°
C33C34C42H421180.0°180.0°
C33C34C42H42260.0°60.0°
C33C34C42H42360.0°60.0°
C37C38C04C03179.8°180.0°
C37C38C04H0410.2°0.1°
C38C37C36H361142.2°92.2°
C38C37C36H36297.0°144.4°
C38C37H371H372122.5°122.3°
C38C04C03C021.4°0.0°
C38C04C03H041180.0°180.0°
C38C04C03S05179.4°179.9°
C04C38C37H37174.1°78.0°
C04C38C37H37247.6°44.1°
O12C11C10C13119.6°120.0°
O12C11C10H111121.9°120.0°
O12C11C10N08167.4°64.3°
O12C11C13H111122.7°120.1°
O12C11C13C2647.3°55.0°
O12C11C13N1468.2°65.0°
O12C11C10H10272.6°175.7°
O12C11C10H10147.4°55.7°
O12C11C13H131170.2°175.0°
C02C03C04S05178.0°180.0°
C02C03S05N0886.4°88.2°
C02C03S05O0631.0°158.2°
C02C03S05O07156.9°25.4°
C03C02C01H011179.8°180.0°
C02C03C04H041178.6°180.0°
C33C09N08H091120.4°120.0°
C33C09N08H092120.4°120.0°
C09C33C35H331117.7°120.0°
C33C09N08C1079.5°85.0°
C33C09N08S05136.8°95.0°
C33C09H091H092118.8°119.9°
C09C33C34H341171.1°65.0°
C09C33C34H34251.2°55.0°
C09C33C35H35157.4°60.0°
C09C33C35H35362.6°59.9°
C09C33C35H352177.4°180.0°
N08C09C33C3561.2°65.0°
C09N08C10C1199.0°64.5°
C09N08C10S05143.4°179.9°
C09N08S05C0357.5°93.7°
C09N08S05O06173.9°152.8°
C09N08S05O0761.2°19.9°
C09N08C10H102141.0°55.5°
C09N08C10H10121.0°175.5°
N08C09H091H092118.8°120.0°
N08C09C33H33156.8°55.0°
C35C33C09H091178.4°175.0°
C35C33C09H09259.2°55.0°
C35C33C34H34166.1°55.0°
C35C33C34H342174.0°175.0°
C33C35H351H353120.0°120.0°
C33C35H351H352120.0°120.0°
C33C35H353H352120.0°120.0°
C11C10N08H102120.0°120.0°
C11C10N08H101120.0°120.0°
C10C11C13H111118.6°120.0°
C11C10N08S05117.6°115.6°
C10C11C13C2671.4°65.0°
C10C11C13N14173.1°175.0°
C11C10H102H101120.1°120.0°
C10C11C13H13151.5°55.0°
C10C11O12H121180.0°59.2°
N08C10C11C1373.0°175.8°
C10N08S05C0389.9°86.4°
C10N08S05O0626.5°27.2°
C10N08S05O07151.4°160.1°
N08C10H102H101120.1°120.0°
C10N08C09H09140.9°35.0°
C10N08C09H092160.1°155.0°
N08C10C11H11145.5°55.8°
C11C13C26N14115.8°120.0°
C11C13C26H131122.9°120.0°
C11C13N14H131120.7°120.0°
C11C13C26C27173.6°175.0°
C11C13N14C15116.4°155.0°
C13C11C10H10247.0°55.8°
C13C11C10H101167.0°64.2°
C11C13C26H26153.9°65.0°
C11C13C26H26266.6°55.0°
C11C13N14H14163.6°25.0°
C13C11O12H12162.3°60.8°
C04C03S05N0891.6°91.8°
C04C03S05O06150.9°21.7°
C04C03S05O0725.1°154.6°
C04C03C02H021178.0°180.0°
C03S05N08O06116.4°113.5°
C03S05N08O07118.7°113.6°
C03S05O06O07123.8°122.9°
S05C03C02H0210.1°0.0°
S05C03C04H0410.6°0.0°
N08S05O06O07121.2°123.0°
S05N08C10H1022.4°124.4°
S05N08C10H101122.4°4.4°
S05N08C09H091102.8°145.0°
S05N08C09H09216.4°25.0°
C26C13N14H131120.5°120.0°
C13C26C27H261119.8°120.0°
C13C26C27H262119.7°120.0°
C26C13N14C15124.8°85.0°
C13C26C27C32108.5°90.0°
C13C26C27C2873.3°90.0°
C13C26H261H262120.8°120.0°
C26C13C11H111170.0°175.0°
C26C13N14H14155.2°95.0°
N14C13C26C2757.9°65.0°
C13N14C15H141180.0°179.9°
C13N14C15O17178.9°180.0°
C13N14C15O163.5°0.0°
N14C13C26H26161.9°55.0°
N14C13C26H262177.6°175.0°
N14C13C11H11154.5°55.0°
C26C27C32C28178.2°180.0°
C26C27C32C31178.9°179.5°
C26C27C28C29179.9°180.0°
C27C26C13H13163.5°55.0°
C27C26H261H262120.7°120.0°
C26C27C28H2810.2°0.2°
C26C27C32H3211.1°0.0°
N14C15O17O16177.5°180.0°
N14C15O17C18168.9°180.0°
C15N14C13H1314.3°35.0°
C27C32C31H321180.0°179.4°
C32C27C28C292.0°0.0°
C27C32C31C300.9°0.8°
C32C27C26H26111.2°30.0°
C32C27C26H262131.7°150.0°
C32C27C28H281178.0°179.8°
C27C32C31H311179.1°179.7°
C28C27C32C310.7°0.5°
C27C28C29H281180.0°179.8°
C27C28C29C301.7°0.3°
C28C27C26H261167.0°150.0°
C28C27C26H26246.5°30.0°
C27C28C29H291178.3°179.7°
C28C27C32H321179.3°180.0°
C15O17C18C19137.2°97.0°
C15O17C18C21110.9°150.0°
C15O17C18H18120.0°26.6°
O17C15N14H1411.2°0.0°
O16C15O17C1813.6°0.0°
O16C15N14H141176.5°180.0°
C32C31C30H311180.0°179.4°
C32C31C30C291.2°0.6°
C32C31C30H301178.9°179.5°
O17C18C19O2075.3°154.4°
O17C18C19C21118.0°118.3°
O17C18C19H181119.4°123.5°
O17C18C21H181130.0°123.3°
O17C18C21C2279.7°137.6°
O17C18C21C2333.6°26.8°
O17C18C21H211159.2°99.5°
O17C18C19H19243.0°86.7°
O17C18C19H191166.5°36.2°
O20C19C18H192118.3°118.9°
O20C19C18H191118.3°118.2°
O20C19C18C2142.7°36.2°
C19O20C22O25137.0°87.6°
C19O20C22C2120.3°27.8°
C19O20C22H22194.8°149.3°
O20C19C18H181165.4°82.1°
O20C19H192H191124.9°122.6°
C22O20C19C1836.4°40.4°
O20C22C21C189.8°3.8°
O20C22O25C24110.3°141.1°
O20C22O25C21109.2°115.3°
O20C22O25H221125.3°123.1°
O20C22C21H221115.4°121.4°
O20C22C21C23129.4°118.3°
O20C22C21H211113.7°118.9°
C22O20C19H192154.7°159.2°
C22O20C19H19181.9°78.1°
C19C18C21H181119.5°118.3°
C19C18C21C2230.9°19.2°
C19C18C21C23144.2°91.6°
C19C18C21H21190.2°142.1°
C18C19H192H191124.8°122.9°
C28C29C30C310.1°0.0°
C28C29C30H291180.0°180.0°
C28C29C30H301179.8°180.0°
C18C21C22O25106.2°113.2°
C18C21C23C2495.5°132.0°
C18C21C22C23119.6°114.5°
C18C21C22H211123.5°122.8°
C18C21C23H211127.0°126.3°
C18C21C22H221125.2°125.2°
C21C18C19H192161.0°155.1°
C21C18C19H19175.6°82.0°
C18C21C23H232145.0°14.0°
C18C21C23H23124.0°109.7°
O25C24C23H241120.0°118.8°
O25C24C23H242120.0°118.3°
C24O25C22C211.1°25.7°
O25C24C23C2121.9°36.9°
C24O25C22H221124.4°95.9°
O25C24H241H242120.0°122.7°
O25C24C23H23297.6°80.9°
O25C24C23H231141.4°155.5°
C22O25C24C2313.6°39.6°
O25C22C21H221128.6°121.6°
O25C22C21C2313.4°1.3°
O25C22C21H211130.3°124.0°
C22O25C24H241133.6°158.2°
C22O25C24H242106.4°78.9°
C24C23C21C2221.5°21.1°
C24C23C21H232119.5°118.0°
C24C23C21H231119.5°118.3°
C24C23C21H211137.5°101.8°
C23C24H241H242120.0°122.9°
C24C23H232H231121.4°123.6°
C31C30C29H301180.0°180.0°
C31C30C29H291179.9°180.0°
C30C31C32H321179.1°179.7°
C22C21C23H211116.0°122.9°
C22C21C18H181150.4°99.1°
C22C21C23H23298.0°96.9°
C22C21C23H231141.0°139.4°
C23C21C22H221115.2°120.3°
C21C23C24H241141.9°155.7°
C21C23C24H24298.1°81.4°
C23C21C18H18196.4°150.1°
C21C23H232H231121.4°123.9°
C30C29C28H281178.3°180.0°
C29C30C31H311178.8°180.0°
H102C10C11H111165.5°64.2°
H101C10C11H11174.5°175.8°
H131C13C26H261176.8°175.0°
H131C13C26H26256.2°65.0°
H131C13C11H11167.1°65.0°
H131C13N14H141175.7°145.0°
H211C21C22H2211.7°2.5°
H211C21C18H18129.3°23.8°
H211C21C23H23218.0°140.2°
H211C21C23H231103.0°16.5°
H241C24C23H23222.3°37.9°
H241C24C23H23198.6°85.7°
H242C24C23H232142.4°160.9°
H242C24C23H23121.4°37.2°
H281C28C29H2911.7°0.0°
H011C01C02H0210.2°0.0°
H091C09C33H33163.6°65.0°
H092C09C33H331177.2°175.0°
H111C11O12H12159.2°179.2°
H181C18C19H19276.3°36.8°
H181C18C19H19147.1°159.7°
H291C29C30H3010.2°0.0°
H301C30C31H3111.1°0.0°
H311C31C32H3210.9°0.3°
H331C33C34H34153.6°175.0°
H331C33C34H34266.2°65.0°
H331C33C35H35160.2°60.0°
H331C33C35H353179.8°180.0°
H331C33C35H35259.8°60.0°
H341C34C42H42160.0°60.0°
H341C34C42H42260.1°180.0°
H341C34C42H423179.9°60.0°
H342C34C42H42159.9°60.0°
H342C34C42H422179.9°60.1°
H342C34C42H42360.1°180.0°
H351C35H353H352120.0°120.0°
H361C36C37H37123.0°149.3°
H361C36C37H37298.7°27.2°
H361C36C40H40122.9°149.7°
H362C36C37H371143.9°25.9°
H362C36C37H37222.2°96.2°
H362C36C40H401143.7°26.2°
H401C40O41H41155.9°57.9°
H421C42H422H423119.9°120.0°

225946

PDB entries from 2024-10-09

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