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SummaryGeometryRelated PDB entries

YTO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O26S23doub1.42Å1.49Å
O25S23doub1.42Å1.47Å
S23C24sing1.81Å1.82Å
S23C22sing1.81Å1.84Å
C22C21sing1.51Å1.53Å
C21C20doub1.38Å1.38ÅAromatic
C21C27sing1.39Å1.39ÅAromatic
F28C27sing1.35Å1.37Å
C20C19sing1.38Å1.39ÅAromatic
C27C29doub1.38Å1.39ÅAromatic
C19C18doub1.40Å1.39ÅAromatic
C29C18sing1.39Å1.38ÅAromatic
C18C17sing1.48Å1.56Å
O16C14doub1.22Å1.28Å
C14C13sing1.47Å1.53Å
C14O15sing1.35Å1.26Å
C17C13doub1.38Å1.40ÅAromatic
C17C30sing1.47Å1.41ÅAromatic
C13N12sing1.38Å1.34ÅAromatic
C30C31doub1.40Å1.40ÅAromatic
C30C11sing1.41Å1.40ÅAromatic
C31C32sing1.37Å1.39ÅAromatic
N12C11sing1.38Å1.35ÅAromatic
C11C10doub1.39Å1.43ÅAromatic
C32C33doub1.39Å1.39ÅAromatic
C33C10sing1.38Å1.38ÅAromatic
C10C02sing1.51Å1.59Å
C04C05sing1.51Å1.54Å
C04O03sing1.43Å1.38Å
C06C05doub1.35Å1.42ÅAromatic
C06N07sing1.34Å1.34ÅAromatic
C02O03sing1.43Å1.38Å
C02C01sing1.53Å1.54Å
C05N09sing1.35Å1.33ÅAromatic
N07N08doub1.29Å1.30ÅAromatic
N09N08sing1.29Å1.34ÅAromatic
N12H121sing0.97Å1.00Å
C24H243sing1.09Å1.10Å
C24H242sing1.09Å1.10Å
C24H241sing1.09Å1.10Å
C31H311sing1.08Å1.08Å
C29H291sing1.08Å1.08Å
C32H321sing1.08Å1.08Å
C33H331sing1.08Å1.08Å
C20H201sing1.08Å1.08Å
C19H191sing1.08Å1.08Å
C01H013sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C02H021sing1.09Å1.10Å
C04H041sing1.09Å1.10Å
C04H042sing1.09Å1.10Å
C06H061sing1.08Å1.08Å
C22H222sing1.09Å1.10Å
C22H221sing1.09Å1.10Å
N09H091sing0.97Å1.00Å
O15H1sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O26S23O25107.8°119.3°
O26S23C24105.9°108.6°
O26S23C22114.7°108.6°
O25S23C24108.2°108.6°
O25S23C22112.3°108.6°
C24S23C22107.6°101.9°
S23C24H243109.5°109.5°
S23C24H242109.5°109.5°
S23C24H241109.5°109.5°
S23C22C21109.5°109.4°
S23C22H222109.4°109.5°
S23C22H221109.5°109.5°
C22C21C20121.1°119.9°
C22C21C27121.5°119.8°
C21C22H222109.5°109.5°
C21C22H221109.5°109.4°
C20C21C27117.5°120.3°
C21C20C19122.2°120.2°
C21C20H201118.9°119.9°
C21C27F28121.3°120.0°
C21C27C29121.5°120.1°
F28C27C29117.2°119.9°
C20C19C18119.2°119.9°
C19C20H201118.9°119.9°
C20C19H191120.4°120.1°
C27C29C18119.9°119.8°
C27C29H291120.1°120.1°
C19C18C29119.7°119.8°
C19C18C17122.3°120.1°
C18C19H191120.4°120.0°
C29C18C17117.9°120.1°
C18C29H291120.0°120.1°
C18C17C13129.0°126.8°
C18C17C30126.4°126.8°
O16C14C13117.9°120.0°
O16C14O15120.0°120.0°
C13C14O15121.0°120.0°
C14C13C17129.5°125.5°
C14C13N12121.2°125.5°
C14O15H1109.5°114.0°
C13C17C30104.5°106.5°
C17C13N12109.2°109.0°
C17C30C31130.5°133.6°
C17C30C11109.0°106.4°
C13N12C11110.8°110.1°
C13N12H121124.6°125.0°
C31C30C11120.4°120.0°
C30C31C32119.8°119.9°
C30C31H311120.1°120.1°
C30C11N12106.4°108.0°
C30C11C10119.8°119.2°
C31C32C33119.4°120.4°
C32C31H311120.1°120.1°
C31C32H321120.3°119.8°
N12C11C10133.7°132.8°
C11N12H121124.6°125.0°
C11C10C33117.7°119.8°
C11C10C02135.1°120.1°
C32C33C10122.8°120.7°
C33C32H321120.3°119.8°
C32C33H331118.6°119.6°
C33C10C02107.1°120.1°
C10C33H331118.6°119.6°
C10C02O03120.7°109.5°
C10C02C01108.9°109.4°
C10C02H021104.1°109.5°
C05C04O03105.9°109.5°
C04C05C06124.3°126.9°
C04C05N09127.4°126.9°
C05C04H041110.4°109.4°
C05C04H042110.4°109.5°
C04O03C02113.3°114.0°
O03C04H041110.4°109.4°
O03C04H042110.4°109.5°
C05C06N07104.7°106.5°
C06C05N09108.3°106.2°
C05C06H061127.6°126.8°
C06N07N08109.3°108.8°
N07C06H061127.7°126.7°
O03C02C01110.7°109.5°
O03C02H021106.4°109.5°
C02C01H013109.5°109.4°
C02C01H012109.5°109.5°
C02C01H011109.5°109.5°
C01C02H021104.6°109.5°
C05N09N08106.5°108.3°
C05N09H091126.8°125.8°
N07N08N09111.3°110.2°
N08N09H091126.8°125.9°
H243C24H242109.5°109.5°
H243C24H241109.4°109.4°
H242C24H241109.5°109.4°
H013C01H012109.5°109.5°
H013C01H011109.5°109.4°
H012C01H011109.4°109.5°
H041C04H042109.4°109.5°
H222C22H221109.5°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O26S23O25C24114.2°125.0°
O26S23O25C22127.3°125.0°
O26S23C24C22123.1°114.5°
O26S23C22C21179.8°65.5°
O26S23C24H243180.0°65.6°
O26S23C24H24260.0°54.5°
O26S23C24H24160.0°174.5°
O26S23C22H22260.2°54.4°
O26S23C22H22159.8°174.5°
O25S23C24C22121.5°114.5°
O25S23C22C2156.6°65.5°
O25S23C24H24364.6°65.5°
O25S23C24H242175.4°174.5°
O25S23C24H24155.4°54.4°
O25S23C22H22263.4°174.5°
O25S23C22H221176.7°54.4°
C24S23C22C2162.3°180.0°
S23C24H243H242120.0°120.1°
S23C24H243H241120.0°120.0°
S23C24H242H241120.0°120.0°
C24S23C22H222177.7°60.0°
C24S23C22H22157.8°60.1°
S23C22C21H222120.0°120.0°
S23C22C21H221120.0°119.9°
S23C22C21C2095.1°90.0°
S23C22C21C2785.1°90.1°
C22S23C24H24356.9°180.0°
C22S23C24H24263.1°60.0°
C22S23C24H241176.9°60.0°
S23C22H222H221120.0°120.0°
C22C21C20C27179.8°179.9°
C22C21C27F281.7°0.0°
C22C21C20C19179.2°179.7°
C22C21C27C29179.8°180.0°
C22C21C20H2010.8°0.3°
C21C22H222H221120.0°120.0°
C20C21C27F28178.6°179.9°
C21C20C19H201180.0°179.4°
C20C21C27C290.4°0.0°
C21C20C19C180.2°0.7°
C21C20C19H191179.8°179.5°
C20C21C22H22224.8°150.0°
C20C21C22H221144.8°29.9°
C21C27F28C29178.3°180.0°
C27C21C20C191.0°0.4°
C21C27C29C181.0°0.0°
C21C27C29H291179.0°179.7°
C27C21C20H201179.0°179.8°
C27C21C22H222154.9°29.9°
C27C21C22H22134.9°150.0°
F28C27C29C18177.3°180.0°
F28C27C29H2912.7°0.2°
C20C19C18H191180.0°179.9°
C20C19C18C291.2°0.6°
C20C19C18C17178.5°179.4°
C27C29C18C191.8°0.3°
C27C29C18H291180.0°179.7°
C27C29C18C17179.2°179.7°
C19C18C29C17177.5°180.0°
C19C18C17C13143.8°115.0°
C19C18C17C3039.0°65.0°
C19C18C29H291178.3°180.0°
C18C19C20H201179.8°180.0°
C29C18C17C1338.8°65.0°
C29C18C17C30138.3°115.0°
C29C18C19H191178.8°179.5°
C18C17C13C145.9°0.1°
C18C17C13C30177.6°180.0°
C18C17C13N12177.5°180.0°
C18C17C30C311.7°0.1°
C18C17C30C11178.3°180.0°
C17C18C29H2910.8°0.0°
C17C18C19H1911.5°0.5°
O16C14C13O15167.9°179.9°
O16C14C13C1748.8°0.1°
O16C14C13N12127.4°180.0°
O16C14O15H10.0°0.1°
C14C13C17N12176.6°179.9°
C14C13C17C30176.5°180.0°
C14C13N12C11176.1°180.0°
C14C13N12H1213.9°0.4°
C13C14O15H1167.7°180.0°
O15C14C13C17143.3°180.0°
O15C14C13N1240.5°0.1°
C13C17C30C31179.4°180.0°
C13C17C30C110.6°0.0°
C17C13N12C110.8°0.1°
C17C13N12H121179.2°179.7°
C30C17C13N120.1°0.1°
C17C30C31C11180.0°179.9°
C17C30C31C32179.2°179.9°
C17C30C11N121.1°0.0°
C17C30C11C10179.6°179.8°
C17C30C31H3110.7°0.2°
C13N12C11C301.2°0.1°
C13N12C11H121180.0°179.6°
C13N12C11C10179.7°179.8°
C30C31C32H311180.0°179.6°
C31C30C11N12178.9°179.9°
C31C30C11C100.3°0.2°
C30C31C32C330.1°0.4°
C30C31C32H321179.9°179.6°
C11C30C31C320.8°0.1°
C30C11N12C10179.1°179.8°
C30C11C10C330.7°0.2°
C30C11C10C02178.2°179.7°
C30C11N12H121178.8°179.7°
C11C30C31H311179.3°179.7°
C31C32C33H321180.0°180.0°
C31C32C33C101.0°0.4°
C31C32C33H331179.1°180.0°
N12C11C10C33179.7°180.0°
N12C11C10C022.7°0.1°
C11C10C33C321.4°0.1°
C11C10C33C02178.2°179.9°
C11C10C02O0342.5°155.0°
C11C10C02C0187.2°85.0°
C10C11N12H1210.3°0.2°
C11C10C33H331178.7°179.7°
C11C10C02H021161.6°34.9°
C32C33C10H331180.0°179.6°
C32C33C10C02179.6°180.0°
C33C32C31H311179.9°180.0°
C33C10C02O03135.2°24.9°
C33C10C02C0195.1°95.0°
C10C33C32H321179.0°179.6°
C33C10C02H02116.1°145.0°
C10C02O03C0448.2°150.0°
C10C02O03C01128.9°119.9°
C10C02O03H021118.0°120.1°
C10C02C01H021110.8°120.0°
C02C10C33H3310.5°0.4°
C10C02C01H013180.0°180.0°
C10C02C01H01260.0°60.0°
C10C02C01H01160.0°60.0°
C05C04O03H041119.4°119.9°
C05C04O03H042119.5°120.1°
C04C05C06N09179.1°179.7°
C04C05C06N07177.8°179.9°
C05C04O03C02114.1°180.0°
C04C05N09N08178.0°179.9°
C05C04H041H042121.7°120.0°
C04C05C06H0612.1°0.1°
C04C05N09H0911.9°0.0°
O03C04C05C06170.8°0.4°
C04O03C02C01177.0°90.1°
O03C04C05N0910.3°180.0°
C04O03C02H02169.8°30.0°
O03C04H041H042121.6°120.0°
C05C06N07H061180.0°180.0°
C05C06N07N081.0°0.0°
C06C05N09N081.0°0.4°
C06C05C04H04169.8°120.3°
C06C05C04H04251.4°119.7°
C06C05N09H091179.0°179.7°
N07C06C05N091.3°0.2°
C06N07N08N090.4°0.2°
O03C02C01H021114.2°120.1°
O03C02C01H01345.0°60.0°
O03C02C01H012165.0°180.0°
O03C02C01H01175.0°60.0°
C02O03C04H0415.4°60.1°
C02O03C04H042126.5°59.9°
C02C01H013H012120.0°120.0°
C02C01H013H011120.0°120.0°
C02C01H012H011120.0°120.1°
C05N09N08N070.4°0.4°
C05N09N08H091180.0°179.9°
N09C05C04H041109.2°60.1°
N09C05C04H042129.7°59.9°
N09C05C06H061178.8°179.8°
N08N07C06H061179.0°180.0°
N07N08N09H091179.6°179.7°
H243C24H242H241120.0°119.9°
H311C31C32H3210.1°0.0°
H321C32C33H3310.9°0.0°
H201C20C19H1910.2°0.1°
H013C01H012H011120.0°120.0°
H013C01C02H02169.2°60.0°
H012C01C02H02150.8°60.0°
H011C01C02H021170.8°180.0°

223166

PDB entries from 2024-07-31

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