Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

YT5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CBECBFdoub1.38Å1.39ÅAromatic
CBECBDsing1.38Å1.39ÅAromatic
CBFCBGsing1.38Å1.39ÅAromatic
CBDCBCdoub1.38Å1.39ÅAromatic
CBGCBBdoub1.38Å1.40ÅAromatic
CBCCBBsing1.38Å1.40ÅAromatic
CBBCATsing1.51Å1.41Å
CARCATsing1.53Å1.54Å
CARCAQsing1.51Å1.54Å
OAFCAAdoub1.21Å1.23Å
CAICADsing1.53Å1.52Å
CATNAUsing1.47Å1.47Å
CAQOASdoub1.21Å1.23Å
CAQNsing1.35Å1.35Å
CAECAAsing1.52Å1.42Å
CAECADsing1.54Å1.54Å
CAECsing1.51Å1.43Å
CAANABsing1.34Å1.33Å
NABCACsing1.34Å1.33Å
NCAsing1.47Å1.48Å
CACCADsing1.51Å1.38Å
CACOAGdoub1.21Å1.23Å
OCdoub1.21Å1.23Å
CCAsing1.51Å1.54Å
NAUCAVsing1.35Å1.34Å
CACBsing1.53Å1.53Å
CAVOBHdoub1.22Å1.23Å
CAVCAWsing1.46Å1.51Å
CBCG2sing1.53Å1.53Å
CBCG1sing1.53Å1.53Å
CAWCAXdoub1.35Å1.52Å
CAXCAYsing1.46Å1.52Å
CAYCAZdoub1.33Å1.51Å
CAZCBAsing1.51Å1.53Å
CAIH1sing1.09Å1.10Å
CAIH2sing1.09Å1.10Å
CAIH3sing1.09Å1.10Å
CADH4sing1.09Å1.10Å
NABH5sing0.97Å1.00Å
CAEH6sing1.09Å1.10Å
CAH7sing1.09Å1.10Å
CBH8sing1.09Å1.10Å
CG2H9sing1.09Å1.10Å
CG2H10sing1.09Å1.10Å
CG2H11sing1.09Å1.10Å
CG1H12sing1.09Å1.10Å
CG1H13sing1.09Å1.10Å
CG1H14sing1.09Å1.10Å
NH15sing0.97Å1.00Å
CARH16sing1.09Å1.10Å
CARH17sing1.09Å1.10Å
CATH18sing1.09Å1.10Å
CBCH19sing1.08Å1.08Å
CBDH20sing1.08Å1.08Å
CBEH21sing1.08Å1.08Å
CBFH22sing1.08Å1.08Å
CBGH23sing1.08Å1.08Å
NAUH24sing0.97Å1.00Å
CAWH25sing1.08Å1.08Å
CAXH27sing1.08Å1.08Å
CAYH29sing1.08Å1.08Å
CAZH31sing1.08Å1.08Å
CBAH33sing1.09Å1.10Å
CBAH34sing1.09Å1.10Å
CBAH35sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CBFCBECBD120.0°120.0°
CBECBFCBG119.7°120.0°
CBFCBEH21120.0°120.0°
CBECBFH22120.1°120.0°
CBECBDCBC120.3°120.0°
CBECBDH20119.9°120.0°
CBDCBEH21120.0°120.0°
CBFCBGCBB120.8°120.0°
CBGCBFH22120.2°120.0°
CBFCBGH23119.6°120.0°
CBDCBCCBB120.1°120.0°
CBDCBCH19119.9°120.0°
CBCCBDH20119.8°119.9°
CBGCBBCBC119.2°120.0°
CBGCBBCAT119.9°120.0°
CBBCBGH23119.6°120.0°
CBCCBBCAT120.9°120.0°
CBBCBCH19120.0°120.0°
CBBCATCAR111.8°109.5°
CBBCATNAU106.8°109.5°
CBBCATH18109.7°109.5°
CATCARCAQ109.6°109.5°
CARCATNAU111.8°109.5°
CATCARH16109.4°109.5°
CATCARH17109.4°109.4°
CARCATH18107.9°109.5°
CARCAQOAS119.6°120.0°
CARCAQN116.2°120.0°
CAQCARH16109.4°109.5°
CAQCARH17109.4°109.5°
OAFCAACAE125.7°125.4°
OAFCAANAB121.8°125.4°
CAICADCAE113.3°110.7°
CAICADCAC110.5°110.6°
CADCAIH1109.5°109.4°
CADCAIH2109.5°109.5°
CADCAIH3109.5°109.5°
CAICADH4109.3°110.6°
CATNAUCAV119.6°120.0°
NAUCATH18108.8°109.4°
CATNAUH24120.2°120.0°
OASCAQN124.1°120.0°
CAQNCA122.8°120.0°
CAQNH15118.6°120.0°
CAACAECAD101.6°103.4°
CAACAEC116.5°110.6°
CAECAANAB111.3°109.2°
CAACAEH6107.2°110.6°
CADCAEC117.8°110.8°
CAECADCAC103.4°103.7°
CAECADH4109.1°110.6°
CADCAEH6105.8°110.6°
CAECO121.2°120.0°
CAECCA118.8°120.0°
CCAEH6107.1°110.6°
CAANABCAC109.2°114.5°
CAANABH5125.4°122.8°
NABCACCAD112.0°109.2°
NABCACOAG124.7°125.5°
CACNABH5125.4°122.7°
NCAC111.9°109.5°
NCACB106.7°109.5°
NCAH7109.8°109.5°
CANH15118.6°120.0°
CADCACOAG122.8°125.4°
CACCADH4111.3°110.6°
OCCA119.7°120.0°
CCACB110.2°109.5°
CCAH7109.0°109.5°
NAUCAVOBH123.6°120.0°
NAUCAVCAW114.9°120.0°
CAVNAUH24120.2°120.0°
CACBCG2108.3°109.5°
CACBCG1111.9°109.5°
CBCAH7109.1°109.5°
CACBH8109.2°109.5°
OBHCAVCAW121.4°120.0°
CAVCAWCAX106.2°120.0°
CAVCAWH25126.9°120.1°
CG2CBCG1109.1°109.4°
CG2CBH8109.2°109.5°
CBCG2H9109.5°109.5°
CBCG2H10109.5°109.5°
CBCG2H11109.5°109.4°
CG1CBH8109.2°109.4°
CBCG1H12109.5°109.4°
CBCG1H13109.5°109.5°
CBCG1H14109.5°109.5°
CAWCAXCAY103.2°120.0°
CAXCAWH25126.9°120.0°
CAWCAXH27128.4°120.0°
CAXCAYCAZ104.1°120.0°
CAYCAXH27128.4°120.0°
CAXCAYH29127.9°120.0°
CAYCAZCBA105.7°120.0°
CAZCAYH29128.0°120.1°
CAYCAZH31127.2°120.0°
CBACAZH31127.2°120.0°
CAZCBAH33109.5°109.5°
CAZCBAH34109.5°109.5°
CAZCBAH35109.5°109.5°
H1CAIH2109.4°109.4°
H1CAIH3109.5°109.5°
H2CAIH3109.5°109.5°
H9CG2H10109.5°109.4°
H9CG2H11109.4°109.5°
H10CG2H11109.5°109.4°
H12CG1H13109.5°109.5°
H12CG1H14109.5°109.5°
H13CG1H14109.5°109.4°
H16CARH17109.5°109.5°
H33CBAH34109.4°109.4°
H33CBAH35109.5°109.5°
H34CBAH35109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CBFCBECBDH21180.0°179.8°
CBECBFCBGH22180.0°179.8°
CBFCBECBDCBC0.0°0.1°
CBECBFCBGCBB0.5°0.5°
CBFCBECBDH20180.0°180.0°
CBECBFCBGH23179.5°180.0°
CBDCBECBFCBG0.0°0.2°
CBECBDCBCH20180.0°179.9°
CBECBDCBCCBB0.6°0.1°
CBECBDCBCH19179.4°179.9°
CBDCBECBFH22180.0°180.0°
CBFCBGCBBH23180.0°179.5°
CBFCBGCBBCBC1.0°0.5°
CBFCBGCBBCAT179.6°179.7°
CBGCBFCBEH21180.0°180.0°
CBDCBCCBBCBG1.1°0.3°
CBDCBCCBBH19180.0°180.0°
CBDCBCCBBCAT179.7°180.0°
CBCCBDCBEH21180.0°179.7°
CBGCBBCBCCAT178.6°179.8°
CBGCBBCATCAR65.7°79.8°
CBGCBBCATNAU56.9°40.3°
CBGCBBCATH18174.6°160.2°
CBGCBBCBCH19179.0°179.8°
CBBCBGCBFH22179.5°179.7°
CBCCBBCATCAR115.7°100.0°
CBCCBBCATNAU121.8°140.0°
CBCCBBCATH184.0°20.0°
CBBCBCCBDH20179.4°180.0°
CBCCBBCBGH23179.0°180.0°
CBBCATCARNAU119.7°120.0°
CBBCATCARH18120.7°120.0°
CBBCATCARCAQ167.1°175.0°
CBBCATNAUH18118.4°120.0°
CBBCATNAUCAV85.8°85.0°
CBBCATCARH1672.9°54.9°
CBBCATCARH1747.1°65.0°
CATCBBCBCH190.3°0.0°
CATCBBCBGH230.3°0.2°
CBBCATNAUH2494.2°95.1°
CATCARCAQH16120.0°120.0°
CATCARCAQH17120.0°119.9°
CARCATNAUH18119.1°120.0°
CATCARCAQOAS71.9°0.0°
CATCARCAQN107.7°180.0°
CARCATNAUCAV151.7°154.9°
CATCARH16H17119.9°119.9°
CARCATNAUH2428.4°25.0°
CAQCARCATNAU73.3°65.0°
CARCAQOASN179.6°180.0°
CARCAQNCA177.3°180.0°
CARCAQNH152.7°0.1°
CAQCARH16H17119.9°120.0°
CAQCARCATH1846.4°55.0°
OAFCAACAENAB167.9°179.8°
OAFCAACAECAD177.4°180.0°
OAFCAACAEC48.1°61.3°
OAFCAANABCAC177.1°179.9°
OAFCAANABH52.9°0.1°
OAFCAACAEH671.8°61.6°
CAICADCAECAA134.6°118.4°
CAICADCAECAC119.6°118.6°
CAICADCAEH4121.9°122.9°
CAICADCAEC96.9°123.0°
CAICADCACNAB132.8°118.5°
CAICADCACH4121.5°122.8°
CAICADCACOAG54.3°61.5°
CADCAIH1H2120.0°119.9°
CADCAIH1H3120.0°120.0°
CADCAIH2H3120.0°120.0°
CAICADCAEH622.8°0.0°
CATNAUCAVH24180.0°180.0°
CATNAUCAVOBH0.8°0.0°
CATNAUCAVCAW176.5°180.0°
NAUCATCARH1646.8°175.0°
NAUCATCARH17166.7°55.0°
OASCAQNCA2.3°0.0°
OASCAQNH15177.7°180.0°
OASCAQCARH16168.0°120.0°
OASCAQCARH1748.1°120.0°
CAQNCAH15180.0°179.9°
CAQNCAC119.7°155.0°
CAQNCACB119.7°85.0°
CAQNCAH71.5°35.0°
NCAQCARH1612.3°60.0°
NCAQCARH17132.2°60.1°
CAACAECADC128.5°118.5°
CAACAECADH6111.8°118.4°
CAACAECH6119.9°122.9°
CAECAANABCAC8.6°0.1°
CAACAECADCAC15.0°0.1°
CAACAECO36.0°92.7°
CAACAECCA150.8°87.4°
CAACAECADH4103.5°118.7°
CAECAANABH5171.3°179.9°
CADCAECH6119.0°123.0°
CADCAECAANAB14.7°0.2°
CAECADCACNAB11.3°0.1°
CAECADCACH4116.9°118.6°
CAECADCACOAG175.9°179.9°
CADCAECO157.1°21.4°
CADCAECCA29.7°158.5°
CAECADCAIH1180.0°57.8°
CAECADCAIH260.0°62.1°
CAECADCAIH360.0°177.8°
CCAECAANAB144.0°118.5°
CAECCAN102.4°111.6°
CCAECADCAC143.5°118.4°
CAECOCA173.1°180.0°
CAECCACB139.0°128.4°
CCAECADH425.0°0.1°
CAECCAH719.2°8.4°
CAANABCACH5180.0°180.0°
CAANABCACCAD2.5°0.0°
CAANABCACOAG175.2°180.0°
NABCAACAEH696.1°118.5°
NABCACCADOAG172.9°180.0°
NABCACCADH4105.7°118.7°
NCACO70.8°68.4°
NCACCB118.6°120.0°
NCACH7121.7°120.0°
NCACBH7118.6°120.0°
NCACBCG274.7°177.1°
NCACBCG1165.1°62.9°
NCACBH844.1°57.0°
CACCADCAIH164.5°56.5°
CACCADCAIH255.5°176.4°
CACCADCAIH3175.4°63.5°
CADCACNABH5177.5°180.0°
CACCADCAEH696.8°118.5°
OAGCACCADH467.2°61.3°
OAGCACNABH54.8°0.0°
OCCACB47.7°51.5°
OCCAEH683.9°144.4°
OCCAH7167.5°171.6°
CCACBH7119.7°120.0°
CCACBCG2163.6°57.1°
CCACBCG143.4°177.1°
CACCAEH689.3°35.5°
CCACBH877.6°63.0°
CCANH1560.3°25.0°
NAUCAVOBHCAW177.2°180.0°
NAUCAVCAWCAX157.8°180.0°
CAVNAUCATH1832.6°35.0°
NAUCAVCAWH2522.2°0.0°
CACBCG2CG1122.0°120.0°
CACBCG2H8118.8°120.0°
CACBCG1H8121.0°120.0°
CACBCG2H9180.0°54.0°
CACBCG2H1060.0°174.0°
CACBCG2H1160.0°66.0°
CACBCG1H12180.0°60.0°
CACBCG1H1360.0°180.0°
CACBCG1H1460.0°60.0°
CBCANH1560.3°95.0°
OBHCAVCAWCAX24.7°0.0°
OBHCAVNAUH24179.2°180.0°
OBHCAVCAWH25155.3°180.0°
CAVCAWCAXH25180.0°180.0°
CAVCAWCAXCAY153.7°180.0°
CAWCAVNAUH243.4°0.0°
CAVCAWCAXH2726.3°0.0°
CG2CBCG1H8119.2°120.0°
CG2CBCAH744.0°62.9°
CBCG2H9H10120.0°120.1°
CBCG2H9H11120.0°120.0°
CBCG2H10H11120.0°119.9°
CG2CBCG1H1260.2°180.0°
CG2CBCG1H13179.8°60.0°
CG2CBCG1H1459.8°60.0°
CG1CBCAH776.3°57.0°
CG1CBCG2H958.0°66.0°
CG1CBCG2H1062.0°54.0°
CG1CBCG2H11178.0°174.0°
CBCG1H12H13120.0°120.0°
CBCG1H12H14120.0°120.0°
CBCG1H13H14120.0°120.0°
CAWCAXCAYH27180.0°180.0°
CAWCAXCAYCAZ176.8°180.0°
CAWCAXCAYH293.2°0.0°
CAXCAYCAZH29180.0°180.0°
CAXCAYCAZCBA178.6°180.0°
CAYCAXCAWH2526.3°0.0°
CAXCAYCAZH311.4°0.0°
CAYCAZCBAH31180.0°179.9°
CAZCAYCAXH273.2°0.0°
CAYCAZCBAH33180.0°180.0°
CAYCAZCBAH3460.0°60.0°
CAYCAZCBAH3560.0°60.1°
CBACAZCAYH291.4°0.0°
CAZCBAH33H34120.0°120.1°
CAZCBAH33H35120.0°120.0°
CAZCBAH34H35120.0°120.0°
H1CAIH2H3120.0°120.0°
H1CAICADH458.2°179.3°
H2CAICADH4178.2°60.8°
H3CAICADH461.8°59.2°
H4CADCAEH6144.7°122.9°
H7CACBH8162.7°177.0°
H7CANH15178.5°145.0°
H8CBCG2H961.2°174.1°
H8CBCG2H10178.8°65.9°
H8CBCG2H1158.8°54.0°
H8CBCG1H1259.0°60.0°
H8CBCG1H1361.0°60.0°
H8CBCG1H14179.0°180.0°
H9CG2H10H11119.9°120.0°
H12CG1H13H14120.0°120.0°
H16CARCATH18166.4°65.1°
H17CARCATH1873.7°175.0°
H18CATNAUH24147.5°145.0°
H19CBCCBDH200.6°0.0°
H20CBDCBEH210.0°0.2°
H21CBECBFH220.0°0.2°
H22CBFCBGH230.5°0.2°
H25CAWCAXH27153.7°180.0°
H27CAXCAYH29176.8°180.0°
H29CAYCAZH31178.6°180.0°
H31CAZCBAH330.0°0.0°
H31CAZCBAH34120.0°120.0°
H31CAZCBAH35120.0°120.0°
H33CBAH34H35120.0°120.0°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon