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YSA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CD1CE1doub1.38Å1.39ÅAromatic
CD1CGsing1.38Å1.39ÅAromatic
CD1HD1sing1.08Å1.10Å
CE1CZsing1.39Å1.39ÅAromatic
CE1HE1sing1.08Å1.10Å
CZOHsing1.36Å1.36Å
CZCE2doub1.39Å1.39ÅAromatic
OHHOHsing0.97Å0.95Å
CE2CD2sing1.38Å1.39ÅAromatic
CE2HE2sing1.08Å1.10Å
CD2CGdoub1.38Å1.39ÅAromatic
CD2HD2sing1.08Å1.10Å
CGCBsing1.51Å1.53Å
CBCAsing1.53Å1.53Å
CBHB1sing1.09Å1.12Å
CBHB2sing1.09Å1.11Å
CANsing1.47Å1.47Å
CACsing1.51Å1.53Å
CAHAsing1.09Å1.11Å
NHN1sing1.01Å1.02Å
NHN2sing1.01Å1.02Å
COdoub1.21Å1.23Å
CNATsing1.35Å1.33Å
NATSBIsing1.66Å1.63Å
NATHATsing0.97Å1.02Å
SBIOADdoub1.42Å1.50Å
SBIOAEdoub1.42Å1.50Å
SBIO5'sing1.52Å1.50Å
O5'C5'sing1.43Å1.43Å
C5'C4'sing1.53Å1.53Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.53Å
C4'H4'sing1.09Å1.11Å
O4'C1'sing1.44Å1.44Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.55Å1.53Å
C3'H3'sing1.09Å1.12Å
O3'H3sing0.97Å0.95Å
C2'O2'sing1.43Å1.43Å
C2'C1'sing1.55Å1.53Å
C2'H2'sing1.09Å1.11Å
O2'H1sing0.97Å0.95Å
C1'N9sing1.47Å1.48Å
C1'H1'sing1.09Å1.12Å
N9C8sing1.36Å1.33ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
C8N7doub1.30Å1.33ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.33ÅAromatic
C5C4doub1.41Å1.39ÅAromatic
C5C6sing1.41Å1.39ÅAromatic
C4N3sing1.33Å1.34ÅAromatic
N3C2doub1.32Å1.32ÅAromatic
C2N1sing1.32Å1.32ÅAromatic
C2H2sing1.08Å1.10Å
N1C6doub1.33Å1.34ÅAromatic
C6N6sing1.38Å1.33Å
N6HN61sing0.97Å1.02Å
N6HN62sing0.97Å1.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CE1CD1CG120.1°120.1°
CE1CD1HD1119.9°120.0°
CD1CE1CZ119.9°119.9°
CD1CE1HE1120.0°120.1°
CGCD1HD1119.9°119.9°
CD1CGCD2119.9°120.1°
CD1CGCB119.9°120.0°
CZCE1HE1120.0°120.0°
CE1CZOH120.2°120.1°
CE1CZCE2120.0°119.9°
OHCZCE2119.8°120.0°
CZOHHOH120.2°106.8°
CZCE2CD2120.0°119.9°
CZCE2HE2120.0°120.0°
CD2CE2HE2120.0°120.1°
CE2CD2CG120.0°120.1°
CE2CD2HD2120.0°120.0°
CGCD2HD2120.0°120.0°
CD2CGCB120.1°119.9°
CGCBCA113.3°109.5°
CGCBHB1110.8°109.5°
CGCBHB2110.8°109.5°
CACBHB1110.8°109.5°
CACBHB2110.8°109.4°
CBCAN109.5°109.5°
CBCAC108.3°109.5°
CBCAHA110.1°109.5°
HB1CBHB299.5°109.5°
NCAC109.2°109.4°
NCAHA109.3°109.4°
CANHN1112.2°106.7°
CANHN2109.5°106.7°
CCAHA110.5°109.5°
CACO120.8°120.0°
CACNAT115.0°120.0°
HN1NHN2112.2°106.7°
OCNAT124.2°120.0°
CNATSBI120.6°120.0°
CNATHAT109.6°120.0°
SBINATHAT129.8°120.0°
NATSBIOAD111.4°105.8°
NATSBIOAE109.4°105.7°
NATSBIO5'108.5°107.4°
OADSBIOAE109.2°125.4°
OADSBIO5'109.4°105.8°
OAESBIO5'108.8°105.7°
SBIO5'C5'120.0°106.8°
O5'C5'C4'111.2°109.5°
O5'C5'H5'1111.6°109.5°
O5'C5'H5'2111.6°109.5°
C4'C5'H5'1111.6°109.5°
C4'C5'H5'2111.6°109.5°
C5'C4'O4'108.3°109.9°
C5'C4'C3'110.1°109.9°
C5'C4'H4'108.8°109.9°
H5'1C5'H5'298.8°109.4°
O4'C4'C3'106.3°107.4°
O4'C4'H4'112.5°109.9°
C4'O4'C1'108.3°106.9°
C3'C4'H4'110.8°109.8°
C4'C3'O3'111.2°110.8°
C4'C3'C2'100.0°104.0°
C4'C3'H3'114.9°110.4°
O4'C1'C2'106.7°103.5°
O4'C1'N9109.4°110.6°
O4'C1'H1'111.8°110.6°
O3'C3'C2'110.8°110.5°
O3'C3'H3'104.9°110.4°
C3'O3'H3111.2°106.8°
C2'C3'H3'115.3°110.5°
C3'C2'O2'109.5°110.9°
C3'C2'C1'101.7°102.1°
C3'C2'H2'114.9°111.0°
O2'C2'C1'110.9°110.9°
O2'C2'H2'106.3°110.8°
C2'O2'H1109.6°106.8°
C1'C2'H2'113.6°111.0°
C2'C1'N9110.7°110.7°
C2'C1'H1'110.4°110.7°
N9C1'H1'107.8°110.6°
C1'N9C8124.5°126.3°
C1'N9C4128.2°126.3°
C8N9C4107.3°107.4°
N9C8N7110.6°110.0°
N9C8H8124.7°125.0°
N9C4C5107.2°106.0°
N9C4N3134.3°134.9°
N7C8H8124.7°125.0°
C8N7C5107.2°109.4°
N7C5C4107.7°107.1°
N7C5C6133.5°134.7°
C4C5C6118.7°118.2°
C5C4N3118.5°119.1°
C5C6N1119.1°118.4°
C5C6N6119.6°120.8°
C4N3C2121.4°120.6°
N3C2N1121.4°122.4°
N3C2H2119.3°118.8°
N1C2H2119.3°118.8°
C2N1C6120.8°121.2°
N1C6N6121.2°120.8°
C6N6HN61108.6°120.0°
C6N6HN62119.7°120.0°
HN61N6HN62108.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CE1CD1CGHD1180.0°179.5°
CD1CE1CZHE1180.0°179.8°
CD1CE1CZOH179.8°179.7°
CD1CE1CZCE20.1°0.2°
CE1CD1CGCD20.2°0.6°
CE1CD1CGCB177.1°179.7°
CGCD1CE1CZ0.0°0.5°
CGCD1CE1HE1180.0°179.7°
CD1CGCD2CE20.2°0.4°
CD1CGCD2CB177.3°179.7°
CD1CGCD2HD2179.8°179.7°
CD1CGCBCA116.8°90.3°
CD1CGCBHB18.5°149.7°
CD1CGCBHB2117.9°29.7°
HD1CD1CE1CZ180.0°180.0°
HD1CD1CE1HE10.0°0.2°
HD1CD1CGCD2179.8°179.9°
HD1CD1CGCB2.9°0.3°
CE1CZOHCE2179.9°179.9°
CE1CZOHHOH180.0°89.9°
CE1CZCE2CD20.1°0.0°
CE1CZCE2HE2179.9°180.0°
HE1CE1CZOH0.2°0.1°
HE1CE1CZCE2179.9°180.0°
OHCZCE2CD2179.8°179.9°
OHCZCE2HE20.2°0.0°
CE2CZOHHOH0.1°90.0°
CZCE2CD2HE2180.0°180.0°
CZCE2CD2CG0.1°0.1°
CZCE2CD2HD2180.0°180.0°
CE2CD2CGHD2180.0°179.9°
CE2CD2CGCB177.1°180.0°
HE2CE2CD2CG179.9°179.9°
HE2CE2CD2HD20.0°0.0°
CD2CGCBCA65.9°90.1°
CD2CGCBHB1168.8°30.0°
CD2CGCBHB259.4°150.0°
HD2CD2CGCB2.9°0.1°
CGCBCAHB1125.3°120.0°
CGCBCAHB2125.3°120.0°
CGCBHB1HB2116.7°120.0°
CGCBCAN61.0°65.0°
CGCBCAC179.9°175.0°
CGCBCAHA59.2°54.9°
CACBHB1HB2116.7°120.0°
CBCANC118.4°120.0°
CBCANHA120.7°120.0°
CBCACHA120.7°120.1°
CBCANHN154.7°60.0°
CBCANHN2180.0°53.8°
CBCACO113.8°100.0°
CBCACNAT68.1°80.0°
HB1CBCAN64.3°55.0°
HB1CBCAC54.6°65.0°
HB1CBCAHA175.6°174.9°
HB2CBCAN173.7°175.0°
HB2CBCAC54.8°55.0°
HB2CBCAHA66.1°65.0°
NCACHA120.2°120.0°
CANHN1HN2123.8°113.8°
NCACO5.4°20.0°
NCACNAT172.7°160.0°
CCANHN1173.1°60.0°
CCANHN261.6°173.8°
CACONAT177.9°180.0°
CACNATSBI178.8°180.0°
CACNATHAT1.2°0.0°
HACANHN165.9°180.0°
HACANHN259.4°66.2°
HACACO125.6°139.9°
HACACNAT52.5°40.0°
OCNATSBI3.2°0.0°
OCNATHAT176.8°180.0°
CNATSBIHAT180.0°180.0°
CNATSBIOAD59.0°177.6°
CNATSBIOAE61.9°47.6°
CNATSBIO5'179.5°65.0°
NATSBIOADOAE121.0°123.1°
NATSBIOADO5'120.0°113.8°
NATSBIOAEO5'118.4°113.7°
NATSBIO5'C5'103.1°75.0°
HATNATSBIOAD121.0°2.4°
HATNATSBIOAE118.1°132.4°
HATNATSBIO5'0.5°115.0°
OADSBIOAEO5'119.3°123.1°
OADSBIO5'C5'18.7°37.6°
OAESBIO5'C5'138.0°172.4°
SBIO5'C5'C4'103.2°180.0°
SBIO5'C5'H5'122.1°60.0°
SBIO5'C5'H5'2131.6°60.0°
O5'C5'C4'H5'1125.2°120.0°
O5'C5'C4'H5'2125.3°120.0°
O5'C5'H5'1H5'2117.5°120.0°
O5'C5'C4'O4'158.6°66.7°
O5'C5'C4'C3'85.6°175.3°
O5'C5'C4'H4'36.0°54.3°
C4'C5'H5'1H5'2117.5°120.0°
C5'C4'O4'C3'118.3°119.5°
C5'C4'O4'H4'120.3°121.0°
C5'C4'C3'H4'120.4°121.0°
C5'C4'O4'C1'98.8°146.0°
C5'C4'C3'O3'163.1°119.8°
C5'C4'C3'C2'79.9°121.4°
C5'C4'C3'H3'44.1°2.8°
H5'1C5'C4'O4'76.2°53.3°
H5'1C5'C4'C3'39.6°64.7°
H5'1C5'C4'H4'161.2°174.3°
H5'2C5'C4'O4'33.3°173.3°
H5'2C5'C4'C3'149.1°55.3°
H5'2C5'C4'H4'89.3°65.7°
O4'C4'C3'H4'122.5°119.5°
O4'C4'C3'O3'79.9°120.7°
O4'C4'C3'C2'37.2°1.9°
O4'C4'C3'H3'161.2°116.7°
C4'O4'C1'C2'6.7°40.1°
C4'O4'C1'N9126.5°158.7°
C4'O4'C1'H1'114.2°78.4°
C3'C4'O4'C1'19.5°26.4°
C4'C3'O3'C2'110.3°114.8°
C4'C3'O3'H3'124.7°122.6°
C4'C3'C2'H3'123.7°118.5°
C4'C3'O3'H3180.0°176.2°
C4'C3'C2'O2'156.8°139.2°
C4'C3'C2'C1'39.4°21.0°
C4'C3'C2'H2'83.7°97.2°
H4'C4'O4'C1'140.8°93.0°
H4'C4'C3'O3'42.6°1.2°
H4'C4'C3'C2'159.7°117.6°
H4'C4'C3'H3'76.3°123.8°
O4'C1'C2'C3'29.8°37.2°
O4'C1'C2'O2'146.2°155.3°
O4'C1'C2'N9118.9°118.5°
O4'C1'C2'H1'121.7°118.5°
O4'C1'C2'H2'94.2°81.1°
O4'C1'N9H1'121.8°122.9°
O4'C1'N9C864.3°23.6°
O4'C1'N9C4114.9°156.8°
O3'C3'C2'H3'118.9°122.5°
O3'C3'C2'O2'39.4°20.3°
O3'C3'C2'C1'77.9°97.9°
O3'C3'C2'H2'158.9°143.8°
C2'C3'O3'H369.7°61.4°
C3'C2'O2'C1'111.4°112.7°
C3'C2'O2'H2'124.7°123.7°
C3'C2'C1'H2'124.0°118.3°
C3'C2'O2'H1180.0°67.3°
C3'C2'C1'N9148.7°155.7°
C3'C2'C1'H1'91.9°81.4°
H3'C3'O3'H355.3°61.2°
H3'C3'C2'O2'79.5°102.3°
H3'C3'C2'C1'163.2°139.6°
H3'C3'C2'H2'40.0°21.3°
O2'C2'C1'H2'119.6°123.6°
O2'C2'C1'N994.9°86.2°
O2'C2'C1'H1'24.5°36.8°
C1'C2'O2'H168.6°179.9°
C2'C1'N9H1'120.9°123.0°
C2'C1'N9C853.0°90.5°
C2'C1'N9C4127.8°89.1°
H2'C2'O2'H155.3°56.4°
H2'C2'C1'N924.7°37.4°
H2'C2'C1'H1'144.1°160.4°
C1'N9C8C4179.3°179.7°
C1'N9C8N7179.5°180.0°
C1'N9C8H80.5°0.1°
C1'N9C4C5179.7°179.9°
C1'N9C4N31.1°0.8°
H1'C1'N9C8173.9°146.5°
H1'C1'N9C46.9°33.9°
N9C8N7H8180.0°179.9°
N9C8N7C50.2°0.0°
C8N9C4C50.5°0.4°
C8N9C4N3179.6°179.5°
C4N9C8N70.2°0.3°
C4N9C8H8179.8°179.7°
N9C4C5N70.6°0.4°
N9C4C5N3179.3°179.2°
N9C4C5C6178.8°179.8°
N9C4N3C2178.8°179.5°
C8N7C5C40.5°0.2°
C8N7C5C6178.7°180.0°
H8C8N7C5179.8°180.0°
N7C5C4C6179.3°179.8°
N7C5C4N3179.9°179.6°
N7C5C6N1179.5°180.0°
N7C5C6N60.5°0.0°
C5C4N3C20.3°0.6°
C4C5C6N10.4°0.3°
C4C5C6N6178.6°179.7°
C6C5C4N30.6°0.6°
C5C6N1C20.0°0.1°
C5C6N1N6179.0°180.0°
C5C6N6HN6154.7°0.0°
C5C6N6HN62180.0°180.0°
C4N3C2N10.1°0.3°
C4N3C2H2179.9°179.7°
N3C2N1H2180.0°179.9°
N3C2N1C60.2°0.1°
C2N1C6N6179.0°180.0°
H2C2N1C6179.8°180.0°
N1C6N6HN61124.3°179.9°
N1C6N6HN621.0°0.0°
C6N6HN61HN62131.5°179.9°

223532

PDB entries from 2024-08-07

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