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Summary Geometry Related PDB entries

YS8

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2	P1	doub	1.48Å	1.52Å
O4	P1	sing	1.61Å	1.52Å
P1	O3	sing	1.61Å	1.52Å
P1	C4	sing	1.82Å	1.82Å
C4	C2	sing	1.53Å	1.53Å
C4	O1	sing	1.43Å	1.43Å
C2	C1	sing	1.53Å	1.52Å
C2	C3	sing	1.53Å	1.52Å
C4	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
C1	H4	sing	1.09Å	1.10Å
C1	H5	sing	1.09Å	1.10Å
C3	H6	sing	1.09Å	1.10Å
C3	H7	sing	1.09Å	1.10Å
C3	H8	sing	1.09Å	1.10Å
O1	H9	sing	0.97Å	0.95Å
O3	H10	sing	0.97Å	0.95Å
O4	H11	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2	P1	O4	111.1°	109.5°
O2	P1	O3	111.7°	109.5°
O2	P1	C4	107.8°	109.5°
O4	P1	O3	111.7°	109.4°
O4	P1	C4	106.6°	109.5°
P1	O4	H11	109.5°	114.1°
O3	P1	C4	107.7°	109.5°
P1	O3	H10	109.5°	114.0°
P1	C4	C2	108.9°	109.5°
P1	C4	O1	108.5°	109.5°
P1	C4	H1	106.8°	109.5°
C2	C4	O1	110.6°	109.5°
C4	C2	C1	111.2°	109.5°
C4	C2	C3	112.0°	109.5°
C2	C4	H1	110.2°	109.5°
C4	C2	H2	107.1°	109.5°
O1	C4	H1	111.8°	109.5°
C4	O1	H9	109.5°	114.0°
C1	C2	C3	111.9°	109.5°
C1	C2	H2	107.2°	109.5°
C2	C1	H3	109.5°	109.5°
C2	C1	H4	109.5°	109.5°
C2	C1	H5	109.5°	109.5°
C3	C2	H2	107.2°	109.5°
C2	C3	H6	109.5°	109.5°
C2	C3	H7	109.5°	109.5°
C2	C3	H8	109.5°	109.5°
H3	C1	H4	109.5°	109.5°
H3	C1	H5	109.5°	109.5°
H4	C1	H5	109.5°	109.4°
H6	C3	H7	109.5°	109.4°
H6	C3	H8	109.5°	109.4°
H7	C3	H8	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2	P1	O4	O3	125.4°	120.0°
O2	P1	O4	C4	117.2°	120.0°
O2	P1	O3	C4	118.2°	120.0°
O2	P1	C4	C2	113.3°	60.0°
O2	P1	C4	O1	126.3°	60.0°
O2	P1	C4	H1	5.6°	180.0°
O2	P1	O3	H10	0.0°	60.0°
O2	P1	O4	H11	0.0°	180.0°
O4	P1	O3	C4	116.7°	120.0°
O4	P1	C4	C2	6.0°	60.0°
O4	P1	C4	O1	114.4°	180.0°
O4	P1	C4	H1	125.0°	60.0°
O4	P1	O3	H10	125.0°	60.0°
O3	P1	C4	C2	126.0°	180.0°
O3	P1	C4	O1	5.6°	60.0°
O3	P1	C4	H1	115.0°	60.0°
O3	P1	O4	H11	125.4°	60.0°
P1	C4	C2	O1	119.1°	120.0°
P1	C4	C2	H1	116.9°	120.0°
P1	C4	O1	H1	117.5°	120.0°
P1	C4	C2	C1	132.4°	180.0°
P1	C4	C2	C3	101.6°	60.0°
P1	C4	C2	H2	15.6°	60.0°
P1	C4	O1	H9	180.0°	60.0°
C4	P1	O3	H10	118.3°	180.0°
C4	P1	O4	H11	117.2°	60.0°
C2	C4	O1	H1	123.1°	120.0°
C4	C2	C1	C3	126.1°	120.0°
C4	C2	C1	H2	116.7°	120.0°
C4	C2	C3	H2	117.1°	120.0°
C4	C2	C1	H3	180.0°	60.0°
C4	C2	C1	H4	60.0°	180.0°
C4	C2	C1	H5	60.0°	60.0°
C4	C2	C3	H6	180.0°	60.0°
C4	C2	C3	H7	60.0°	59.9°
C4	C2	C3	H8	60.0°	180.0°
C2	C4	O1	H9	60.6°	60.0°
O1	C4	C2	C1	108.5°	60.0°
O1	C4	C2	C3	17.5°	60.0°
O1	C4	C2	H2	134.7°	180.0°
C1	C2	C3	H2	117.2°	120.0°
C1	C2	C4	H1	15.5°	60.0°
C2	C1	H3	H4	120.0°	120.0°
C2	C1	H3	H5	120.0°	120.0°
C2	C1	H4	H5	120.0°	120.0°
C1	C2	C3	H6	54.4°	60.0°
C1	C2	C3	H7	65.7°	180.0°
C1	C2	C3	H8	174.4°	60.0°
C3	C2	C4	H1	141.5°	180.0°
C3	C2	C1	H3	53.9°	60.0°
C3	C2	C1	H4	173.9°	60.0°
C3	C2	C1	H5	66.1°	180.0°
C2	C3	H6	H7	120.0°	120.0°
C2	C3	H6	H8	120.0°	120.1°
C2	C3	H7	H8	120.0°	120.1°
H1	C4	C2	H2	101.3°	60.0°
H1	C4	O1	H9	62.5°	180.0°
H2	C2	C1	H3	63.3°	180.0°
H2	C2	C1	H4	56.7°	60.0°
H2	C2	C1	H5	176.7°	60.0°
H2	C2	C3	H6	62.9°	180.0°
H2	C2	C3	H7	177.1°	60.0°
H2	C2	C3	H8	57.2°	60.0°
H3	C1	H4	H5	120.0°	120.0°
H6	C3	H7	H8	120.0°	119.9°

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