YRR
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.62Å | 1.61Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å | |
| P | OP1 | doub | 1.50Å | 1.49Å | |
| P | OP2 | sing | 1.62Å | 1.49Å | |
| P | O5' | sing | 1.62Å | 1.59Å | |
| O5' | C5' | sing | 1.42Å | 1.42Å | |
| C5' | C4' | sing | 1.52Å | 1.51Å | |
| C5' | HC51 | sing | 1.09Å | 1.12Å | |
| C5' | HC52 | sing | 1.09Å | 1.12Å | |
| C4' | N4' | sing | 1.47Å | 1.45Å | |
| C4' | C3' | sing | 1.53Å | 1.52Å | |
| C4' | HC4 | sing | 1.10Å | 1.11Å | |
| N4' | C1' | sing | 1.46Å | 1.43Å | |
| N4' | HN4 | sing | 1.02Å | 1.02Å | |
| C3' | O3' | sing | 1.42Å | 1.43Å | |
| C3' | C2' | sing | 1.53Å | 1.52Å | |
| C3' | HC3 | sing | 1.10Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.52Å | 1.52Å | |
| C2' | HC21 | sing | 1.09Å | 1.12Å | |
| C2' | HC22 | sing | 1.10Å | 1.11Å | |
| C1' | HC11 | sing | 1.09Å | 1.11Å | |
| C1' | HC12 | sing | 1.10Å | 1.11Å | |
| HO1 | OP2 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 110.3° | 118.9° |
| OP3 | P | OP1 | 110.3° | 115.3° |
| OP3 | P | OP2 | 107.2° | 103.3° |
| OP3 | P | O5' | 103.9° | 103.7° |
| OP1 | P | OP2 | 119.3° | 115.0° |
| OP1 | P | O5' | 109.0° | 115.0° |
| OP2 | P | O5' | 106.1° | 102.9° |
| P | OP2 | HO1 | 109.5° | 119.0° |
| P | O5' | C5' | 122.2° | 118.5° |
| O5' | C5' | C4' | 108.8° | 108.7° |
| O5' | C5' | HC51 | 112.4° | 109.2° |
| O5' | C5' | HC52 | 112.5° | 109.2° |
| C4' | C5' | HC51 | 112.5° | 110.1° |
| C4' | C5' | HC52 | 112.5° | 110.1° |
| C5' | C4' | N4' | 108.2° | 110.8° |
| C5' | C4' | C3' | 112.5° | 112.9° |
| C5' | C4' | HC4 | 106.9° | 108.2° |
| HC51 | C5' | HC52 | 97.9° | 109.5° |
| N4' | C4' | C3' | 105.0° | 104.1° |
| N4' | C4' | HC4 | 114.2° | 109.6° |
| C4' | N4' | C1' | 110.2° | 105.0° |
| C4' | N4' | HN4 | 111.9° | 109.1° |
| C3' | C4' | HC4 | 110.1° | 111.2° |
| C4' | C3' | O3' | 110.1° | 109.3° |
| C4' | C3' | C2' | 102.7° | 105.3° |
| C4' | C3' | HC3 | 114.1° | 113.1° |
| C1' | N4' | HN4 | 111.9° | 108.8° |
| N4' | C1' | C2' | 107.0° | 103.1° |
| N4' | C1' | HC11 | 113.2° | 111.9° |
| N4' | C1' | HC12 | 113.1° | 110.2° |
| O3' | C3' | C2' | 111.5° | 110.3° |
| O3' | C3' | HC3 | 105.8° | 108.3° |
| C3' | O3' | HO3' | 110.0° | 106.8° |
| C2' | C3' | HC3 | 112.8° | 110.6° |
| C3' | C2' | C1' | 102.9° | 104.6° |
| C3' | C2' | HC21 | 114.7° | 113.4° |
| C3' | C2' | HC22 | 114.7° | 109.3° |
| C1' | C2' | HC21 | 114.7° | 111.8° |
| C1' | C2' | HC22 | 114.7° | 109.3° |
| C2' | C1' | HC11 | 113.1° | 112.3° |
| C2' | C1' | HC12 | 113.1° | 111.1° |
| HC21 | C2' | HC22 | 95.8° | 108.4° |
| HC11 | C1' | HC12 | 97.4° | 108.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 124.6° | 120.1° |
| OP3 | P | OP1 | O5' | 113.4° | 120.6° |
| OP3 | P | OP2 | O5' | 110.5° | 107.7° |
| OP3 | P | O5' | C5' | 57.0° | 53.2° |
| OP3 | P | OP2 | HO1 | 81.6° | 78.5° |
| HOP3 | OP3 | P | OP1 | 180.0° | 48.8° |
| HOP3 | OP3 | P | OP2 | 48.7° | 77.5° |
| HOP3 | OP3 | P | O5' | 63.3° | 175.4° |
| OP1 | P | OP2 | O5' | 123.4° | 125.8° |
| OP1 | P | O5' | C5' | 60.6° | 180.0° |
| OP1 | P | OP2 | HO1 | 152.2° | 48.0° |
| OP2 | P | O5' | C5' | 169.8° | 54.2° |
| P | O5' | C5' | C4' | 172.6° | 180.0° |
| P | O5' | C5' | HC51 | 47.3° | 59.9° |
| P | O5' | C5' | HC52 | 62.1° | 59.8° |
| O5' | P | OP2 | HO1 | 28.9° | 173.8° |
| O5' | C5' | C4' | HC51 | 125.3° | 119.6° |
| O5' | C5' | C4' | HC52 | 125.3° | 119.5° |
| O5' | C5' | HC51 | HC52 | 118.4° | 119.5° |
| O5' | C5' | C4' | N4' | 49.3° | 176.8° |
| O5' | C5' | C4' | C3' | 66.3° | 60.5° |
| O5' | C5' | C4' | HC4 | 172.7° | 63.1° |
| C4' | C5' | HC51 | HC52 | 118.4° | 121.2° |
| C5' | C4' | N4' | C3' | 120.4° | 121.6° |
| C5' | C4' | N4' | HC4 | 119.0° | 119.4° |
| C5' | C4' | C3' | HC4 | 119.1° | 121.9° |
| C5' | C4' | N4' | C1' | 103.0° | 159.7° |
| C5' | C4' | N4' | HN4 | 22.2° | 43.2° |
| C5' | C4' | C3' | O3' | 155.6° | 103.6° |
| C5' | C4' | C3' | C2' | 85.6° | 137.9° |
| C5' | C4' | C3' | HC3 | 36.9° | 17.1° |
| HC51 | C5' | C4' | N4' | 174.5° | 63.6° |
| HC51 | C5' | C4' | C3' | 58.9° | 179.9° |
| HC51 | C5' | C4' | HC4 | 62.0° | 56.5° |
| HC52 | C5' | C4' | N4' | 76.0° | 57.3° |
| HC52 | C5' | C4' | C3' | 168.4° | 59.1° |
| HC52 | C5' | C4' | HC4 | 47.4° | 177.4° |
| N4' | C4' | C3' | HC4 | 123.4° | 117.9° |
| C4' | N4' | C1' | HN4 | 125.2° | 116.7° |
| N4' | C4' | C3' | O3' | 86.9° | 136.2° |
| N4' | C4' | C3' | C2' | 31.9° | 17.7° |
| N4' | C4' | C3' | HC3 | 154.4° | 103.1° |
| C4' | N4' | C1' | C2' | 4.5° | 43.2° |
| C4' | N4' | C1' | HC11 | 120.7° | 164.1° |
| C4' | N4' | C1' | HC12 | 129.8° | 75.4° |
| C3' | C4' | N4' | C1' | 17.4° | 38.1° |
| C3' | C4' | N4' | HN4 | 142.6° | 78.4° |
| C4' | C3' | O3' | C2' | 113.2° | 115.3° |
| C4' | C3' | O3' | HC3 | 123.7° | 123.6° |
| C4' | C3' | C2' | HC3 | 123.3° | 122.5° |
| C4' | C3' | O3' | HO3' | 180.0° | 48.5° |
| C4' | C3' | C2' | C1' | 33.9° | 7.9° |
| C4' | C3' | C2' | HC21 | 91.3° | 129.9° |
| C4' | C3' | C2' | HC22 | 159.2° | 109.0° |
| HC4 | C4' | N4' | C1' | 138.0° | 81.0° |
| HC4 | C4' | N4' | HN4 | 96.7° | 162.6° |
| HC4 | C4' | C3' | O3' | 36.5° | 18.3° |
| HC4 | C4' | C3' | C2' | 155.3° | 100.2° |
| HC4 | C4' | C3' | HC3 | 82.3° | 139.0° |
| N4' | C1' | C2' | C3' | 24.5° | 30.8° |
| N4' | C1' | C2' | HC11 | 125.3° | 120.6° |
| N4' | C1' | C2' | HC12 | 125.2° | 118.0° |
| N4' | C1' | C2' | HC21 | 100.7° | 153.8° |
| N4' | C1' | C2' | HC22 | 149.8° | 86.2° |
| N4' | C1' | HC11 | HC12 | 119.1° | 121.7° |
| HN4 | N4' | C1' | C2' | 120.7° | 73.5° |
| HN4 | N4' | C1' | HC11 | 114.1° | 47.4° |
| HN4 | N4' | C1' | HC12 | 4.5° | 167.9° |
| O3' | C3' | C2' | HC3 | 118.9° | 119.8° |
| O3' | C3' | C2' | C1' | 83.9° | 109.9° |
| O3' | C3' | C2' | HC21 | 150.8° | 12.1° |
| O3' | C3' | C2' | HC22 | 41.4° | 133.2° |
| C2' | C3' | O3' | HO3' | 66.8° | 163.8° |
| C3' | C2' | C1' | HC21 | 125.2° | 123.1° |
| C3' | C2' | C1' | HC22 | 125.3° | 117.0° |
| C3' | C2' | HC21 | HC22 | 120.6° | 121.6° |
| C3' | C2' | C1' | HC11 | 100.8° | 151.4° |
| C3' | C2' | C1' | HC12 | 149.7° | 87.2° |
| HC3 | C3' | O3' | HO3' | 56.3° | 75.1° |
| HC3 | C3' | C2' | C1' | 157.2° | 130.4° |
| HC3 | C3' | C2' | HC21 | 32.0° | 107.7° |
| HC3 | C3' | C2' | HC22 | 77.5° | 13.4° |
| C1' | C2' | HC21 | HC22 | 120.6° | 120.5° |
| C2' | C1' | HC11 | HC12 | 119.1° | 123.0° |
| HC21 | C2' | C1' | HC11 | 134.0° | 85.5° |
| HC21 | C2' | C1' | HC12 | 24.5° | 35.8° |
| HC22 | C2' | C1' | HC11 | 24.5° | 34.4° |
| HC22 | C2' | C1' | HC12 | 85.0° | 155.8° |
