Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

YRK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O34C33sing1.36Å1.40Å
O02C01sing1.43Å1.40Å
O02C03sing1.36Å1.40Å
C33C03doub1.39Å1.38ÅAromatic
C33N32sing1.32Å1.32ÅAromatic
C03C04sing1.38Å1.39ÅAromatic
N32C31doub1.32Å1.33ÅAromatic
C04C05doub1.40Å1.39ÅAromatic
C31C05sing1.39Å1.39ÅAromatic
O09C08doub1.22Å1.26Å
C05C06sing1.48Å1.40Å
C08C07sing1.46Å1.51Å
C08O10sing1.35Å1.26Å
C06C07doub1.38Å1.40ÅAromatic
C06C30sing1.47Å1.41ÅAromatic
C07N11sing1.38Å1.32ÅAromatic
C30C29doub1.40Å1.40ÅAromatic
C30C12sing1.41Å1.38ÅAromatic
C29C28sing1.37Å1.39ÅAromatic
N11C12sing1.37Å1.33ÅAromatic
C12C13doub1.39Å1.40ÅAromatic
C28C27doub1.39Å1.40ÅAromatic
O26C25doub1.22Å1.18Å
C13C27sing1.38Å1.39ÅAromatic
C13C14sing1.51Å1.54Å
C25O24sing1.35Å1.43Å
C25N16sing1.34Å1.44Å
O24C18sing1.45Å1.41Å
C19C18sing1.53Å1.49Å
C19C20sing1.54Å1.51Å
N16C14sing1.46Å1.46Å
N16C17sing1.47Å1.42Å
C14C15sing1.53Å1.51Å
C18C17sing1.53Å1.50Å
C18C23sing1.53Å1.50Å
C20C23sing1.54Å1.49Å
C20C21sing1.53Å1.48Å
N22C21sing1.47Å1.45Å
C27H271sing1.08Å1.08Å
C29H291sing1.08Å1.08Å
C31H311sing1.08Å1.08Å
C14H141sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
C15H153sing1.09Å1.10Å
C15H151sing1.09Å1.10Å
C01H013sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C04H041sing1.08Å1.08Å
C17H172sing1.09Å1.10Å
C17H171sing1.09Å1.10Å
C19H192sing1.09Å1.10Å
C19H191sing1.09Å1.10Å
C20H201sing1.09Å1.10Å
C21H212sing1.09Å1.10Å
C21H211sing1.09Å1.10Å
C23H231sing1.09Å1.10Å
C23H232sing1.09Å1.10Å
C28H281sing1.08Å1.08Å
N11H111sing0.97Å1.00Å
N22H222sing1.01Å1.00Å
N22H1sing1.01Å1.00Å
O10H2sing0.97Å0.95Å
O34H341sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O34C33C03117.8°119.6°
O34C33N32120.8°119.5°
C33O34H341109.5°114.0°
C01O02C03116.8°117.0°
O02C01H013109.5°109.5°
O02C01H011109.5°109.5°
O02C01H012109.5°109.5°
O02C03C33117.7°120.4°
O02C03C04123.3°120.4°
C03C33N32121.4°120.9°
C33C03C04118.9°119.2°
C33N32C31121.1°121.8°
C03C04C05119.1°118.3°
C03C04H041120.4°120.8°
N32C31C05121.4°120.8°
N32C31H311119.3°119.6°
C04C05C31118.0°119.1°
C04C05C06119.7°120.5°
C05C04H041120.4°120.9°
C31C05C06122.2°120.5°
C05C31H311119.3°119.7°
O09C08C07118.0°120.0°
O09C08O10122.0°120.0°
C05C06C07131.2°126.8°
C05C06C30125.5°126.8°
C07C08O10119.6°120.0°
C08C07C06129.9°125.5°
C08C07N11119.7°125.5°
C08O10H2109.5°114.0°
C07C06C30103.4°106.4°
C06C07N11110.3°109.0°
C06C30C29133.0°133.5°
C06C30C12108.2°106.5°
C07N11C12110.1°110.1°
C07N11H111124.9°125.0°
C29C30C12118.8°120.0°
C30C29C28120.2°119.8°
C30C29H291119.9°120.1°
C30C12N11108.0°108.0°
C30C12C13122.0°119.2°
C29C28C27120.4°120.5°
C28C29H291119.9°120.1°
C29C28H281119.8°119.7°
N11C12C13130.0°132.8°
C12N11H111125.0°124.9°
C12C13C27118.7°119.8°
C12C13C14120.6°120.1°
C28C27C13120.0°120.7°
C28C27H271120.0°119.7°
C27C28H281119.8°119.8°
O26C25O24125.8°123.1°
O26C25N16124.4°123.2°
C27C13C14120.7°120.1°
C13C27H271120.0°119.6°
C13C14N16104.7°109.5°
C13C14C15112.2°109.4°
C13C14H141108.8°109.4°
O24C25N16109.7°113.7°
C25O24C18107.5°108.9°
C25N16C14124.3°125.6°
C25N16C17107.4°108.8°
O24C18C19115.5°116.2°
O24C18C17107.8°105.0°
O24C18C23111.9°116.2°
C18C19C2088.5°86.8°
C19C18C17116.7°115.6°
C19C18C2389.4°88.1°
C18C19H192114.5°113.6°
C18C19H191114.4°113.7°
C19C20C2389.1°87.3°
C19C20C21115.2°113.6°
C20C19H192114.4°113.7°
C20C19H191114.4°113.6°
C19C20H201112.6°113.6°
C14N16C17128.2°125.6°
N16C14C15112.0°109.5°
N16C14H141109.9°109.5°
N16C17C18106.4°103.5°
N16C17H172110.2°110.7°
N16C17H171110.2°110.7°
C15C14H141109.1°109.5°
C14C15H152109.5°109.5°
C14C15H153109.5°109.4°
C14C15H151109.5°109.5°
C17C18C23114.7°115.7°
C18C17H172110.2°110.6°
C18C17H171110.2°110.7°
C18C23C2088.6°86.8°
C18C23H231114.4°113.7°
C18C23H232114.4°113.6°
C23C20C21111.9°113.6°
C23C20H201112.8°113.6°
C20C23H231114.4°113.7°
C20C23H232114.4°113.7°
C20C21N22109.2°109.4°
C21C20H201113.1°112.9°
C20C21H212109.5°109.4°
C20C21H211109.5°109.5°
N22C21H212109.5°109.5°
N22C21H211109.5°109.5°
C21N22H222109.5°111.0°
C21N22H1109.5°111.0°
H152C15H153109.5°109.5°
H152C15H151109.4°109.5°
H153C15H151109.5°109.4°
H013C01H011109.5°109.4°
H013C01H012109.5°109.4°
H011C01H012109.5°109.5°
H172C17H171109.5°110.5°
H192C19H191109.5°113.0°
H212C21H211109.5°109.5°
H231C23H232109.5°113.0°
H222N22H1109.4°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O34C33C03O020.2°0.5°
O34C33C03N32179.7°179.1°
O34C33C03C04179.8°179.9°
O34C33N32C31180.0°179.7°
C01O02C03C33158.4°179.5°
C01O02C03C0421.6°0.0°
O02C01H013H011120.0°120.1°
O02C01H013H012120.0°120.0°
O02C01H011H012120.0°120.0°
O02C03C33C04180.0°179.5°
O02C03C33N32179.8°179.7°
O02C03C04C05179.9°180.0°
C03O02C01H013180.0°180.0°
C03O02C01H01160.0°60.0°
C03O02C01H01260.0°60.0°
O02C03C04H0410.1°0.4°
C03C33N32C310.3°0.6°
C33C03C04C050.1°0.4°
C33C03C04H041179.9°180.0°
C03C33O34H341179.6°90.0°
N32C33C03C040.2°0.8°
C33N32C31C050.3°0.1°
C33N32C31H311179.7°179.7°
N32C33O34H3410.0°90.8°
C03C04C05H041180.0°179.6°
C03C04C05C310.1°0.0°
C03C04C05C06179.2°180.0°
N32C31C05C040.2°0.2°
N32C31C05H311180.0°179.8°
N32C31C05C06179.3°179.8°
C04C05C31C06179.1°180.0°
C04C05C06C07127.5°65.0°
C04C05C06C3052.1°114.9°
C04C05C31H311179.8°180.0°
C31C05C06C0753.4°115.0°
C31C05C06C30126.9°65.0°
C31C05C04H041179.9°179.6°
O09C08C07O10173.1°179.9°
O09C08C07C0637.6°0.0°
O09C08C07N11139.1°179.5°
O09C08O10H20.0°0.1°
C05C06C07C082.3°0.0°
C05C06C07C30179.7°180.0°
C05C06C07N11179.2°179.6°
C05C06C30C290.7°0.0°
C05C06C30C12179.5°179.9°
C06C05C31H3110.7°0.0°
C06C05C04H0410.8°0.4°
C08C07C06N11176.9°179.6°
C08C07C06C30177.4°179.9°
C08C07N11C12177.9°179.9°
C08C07N11H1112.1°0.4°
C07C08O10H2172.8°179.9°
O10C08C07C06149.3°180.0°
O10C08C07N1134.1°0.4°
C07C06C30C29179.6°180.0°
C07C06C30C120.2°0.1°
C06C07N11C120.7°0.4°
C06C07N11H111179.3°180.0°
C30C06C07N110.5°0.3°
C06C30C29C12179.8°179.9°
C06C30C29C28179.8°180.0°
C06C30C12N110.1°0.2°
C06C30C12C13179.2°179.9°
C06C30C29H2910.2°0.1°
C07N11C12C300.5°0.4°
C07N11C12H111180.0°179.6°
C07N11C12C13178.8°179.9°
C30C29C28H291180.0°180.0°
C29C30C12N11180.0°179.7°
C29C30C12C130.7°0.1°
C30C29C28C270.1°0.1°
C30C29C28H281179.9°180.0°
C12C30C29C280.0°0.1°
C30C12N11C13179.2°179.7°
C30C12C13C271.2°0.0°
C30C12C13C14180.0°180.0°
C12C30C29H291180.0°179.9°
C30C12N11H111179.5°179.9°
C29C28C27H281180.0°179.9°
C29C28C27C130.5°0.1°
C29C28C27H271179.5°180.0°
N11C12C13C27179.7°179.7°
N11C12C13C140.9°0.3°
C12C13C27C281.1°0.0°
C12C13C27C14178.8°180.0°
C12C13C14N1691.4°76.0°
C12C13C14C15146.9°164.0°
C12C13C27H271178.9°180.0°
C12C13C14H14126.0°44.1°
C13C12N11H1111.3°0.3°
C28C27C13H271180.0°179.9°
C28C27C13C14179.8°179.9°
C27C28C29H291179.9°179.9°
O26C25O24N16178.2°180.0°
O26C25O24C18176.0°180.0°
O26C25N16C140.0°0.0°
O26C25N16C17177.0°179.9°
C27C13C14N1687.4°104.0°
C27C13C14C1534.3°16.0°
C27C13C14H141155.2°135.9°
C13C27C28H281179.5°180.0°
C13C14N16C2587.3°58.1°
C13C14N16C15121.8°120.0°
C13C14N16H141116.7°120.0°
C13C14N16C1789.1°121.8°
C13C14C15H141120.7°119.9°
C14C13C27H2710.2°0.0°
C13C14C15H152180.0°60.0°
C13C14C15H15360.0°180.0°
C13C14C15H15160.0°60.0°
C25O24C18C19142.7°129.1°
O24C25N16C14178.2°180.0°
O24C25N16C171.2°0.1°
C25O24C18C1710.2°0.0°
C25O24C18C23116.9°129.2°
N16C25O24C185.8°0.1°
C25N16C14C17176.4°179.9°
C25N16C14C15150.9°61.8°
C25N16C17C187.2°0.1°
C25N16C14H14129.4°178.1°
C25N16C17H172112.3°118.4°
C25N16C17H171126.8°118.7°
O24C18C19C17128.3°123.8°
O24C18C19C23114.1°118.5°
O24C18C19C2098.5°93.6°
O24C18C17N1610.9°0.0°
O24C18C17C23125.4°129.6°
O24C18C23C20101.6°93.6°
O24C18C17H172108.6°118.5°
O24C18C17H171130.5°118.6°
O24C18C19H19217.8°20.9°
O24C18C19H191145.3°152.0°
O24C18C23H231142.1°152.0°
O24C18C23H23214.7°20.9°
C18C19C20H192116.3°114.4°
C18C19C20H191116.2°114.5°
C19C18C17N16142.8°129.5°
C19C18C17C23102.7°100.9°
C18C19C20C2315.7°24.7°
C18C19C20C21129.6°139.3°
C19C18C17H17223.3°112.0°
C19C18C17H17197.6°10.9°
C18C19H192H191130.0°131.4°
C18C19C20H20198.7°89.9°
C19C18C23H231100.5°89.6°
C19C18C23H232132.1°139.4°
C20C19C18C17133.2°142.6°
C19C20C23C21116.9°114.6°
C19C20C23H201114.2°114.6°
C19C20C21H201131.5°131.2°
C19C20C21N2289.9°175.0°
C20C19H192H191130.0°131.4°
C19C20C21H21230.0°55.0°
C19C20C21H211150.1°65.0°
C19C20C23H231100.7°89.7°
C19C20C23H232131.9°139.2°
N16C14C15H141121.9°120.1°
C14N16C17C18175.9°180.0°
N16C14C15H15262.6°180.0°
N16C14C15H15357.4°60.0°
N16C14C15H151177.4°60.0°
C14N16C17H17264.6°61.5°
C14N16C17H17156.3°61.4°
C17N16C14C1532.7°118.3°
N16C17C18H172119.5°118.5°
N16C17C18H171119.5°118.6°
N16C17C18C23114.5°129.6°
C17N16C14H141154.2°1.8°
N16C17H172H171121.4°122.9°
C14C15H152H153120.0°120.0°
C14C15H152H151120.0°120.1°
C14C15H153H151120.0°120.0°
C17C18C23C20135.1°142.5°
C18C17H172H171121.4°123.0°
C17C18C19H192110.5°103.0°
C17C18C19H19117.0°28.2°
C17C18C23H23118.9°28.1°
C17C18C23H232108.6°103.0°
C18C23C20H231116.3°114.5°
C18C23C20H232116.3°114.4°
C18C23C20C21132.5°139.3°
C23C18C17H172126.0°11.1°
C23C18C17H1715.0°111.8°
C23C18C19H192131.9°139.3°
C23C18C19H191100.6°89.5°
C18C23C20H20198.6°89.9°
C18C23H231H232129.9°131.3°
C23C20C21H201128.7°131.1°
C23C20C21N22170.2°87.3°
C23C20C19H192132.0°139.2°
C23C20C19H191100.5°89.7°
C23C20C21H21269.8°152.7°
C23C20C21H21150.3°32.7°
C20C23H231H232130.0°131.5°
C20C21N22H212120.0°119.9°
C20C21N22H211120.0°120.0°
C21C20C19H192114.1°106.3°
C21C20C19H19113.4°24.9°
C20C21H212H211120.1°120.0°
C21C20C23H23116.3°24.9°
C21C20C23H232111.2°106.2°
C20C21N22H222180.0°56.1°
C20C21N22H160.0°180.0°
N22C21C20H20141.5°43.8°
N22C21H212H211120.1°120.1°
C21N22H222H1120.0°123.9°
H271C27C28H2810.5°0.1°
H291C29C28H2810.1°0.1°
H141C14C15H15259.3°59.9°
H141C14C15H153179.3°60.1°
H141C14C15H15160.7°180.0°
H152C15H153H151120.0°120.0°
H013C01H011H012120.0°119.9°
H192C19C20H20117.6°24.6°
H191C19C20H201145.1°155.7°
H201C20C21H212161.5°76.1°
H201C20C21H21178.4°163.9°
H201C20C23H231145.1°155.7°
H201C20C23H23217.6°24.6°
H212C21N22H22260.1°63.9°
H212C21N22H1179.9°60.0°
H211C21N22H22260.0°176.1°
H211C21N22H160.0°60.0°

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon