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YR3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.39Å1.39ÅAromatic
C1C6sing1.38Å1.41ÅAromatic
C2C3sing1.39Å1.50ÅAromatic
C2O27sing1.36Å1.37Å
C3C4doub1.38Å1.38ÅAromatic
C3C19sing1.51Å1.52Å
C4C5sing1.38Å1.40ÅAromatic
C5C6doub1.38Å1.42ÅAromatic
C5C7sing1.51Å1.54Å
C7C8sing1.51Å1.52Å
C7C9sing1.53Å1.56Å
C7C10sing1.53Å1.55Å
C8C13doub1.38Å1.41ÅAromatic
C8C17sing1.38Å1.40ÅAromatic
C9C12sing1.53Å1.53Å
C10C11sing1.53Å1.54Å
C13C14sing1.38Å1.39ÅAromatic
C14C15doub1.39Å1.48ÅAromatic
C14C18sing1.51Å1.51Å
C15O20sing1.36Å1.38Å
C15C16sing1.39Å1.40ÅAromatic
O33C22sing1.43Å1.46Å
C22C23sing1.53Å1.53Å
C22C21sing1.53Å1.53Å
C23C26sing1.53Å1.53Å
C23C25sing1.53Å1.53Å
C23C24sing1.53Å1.52Å
C21O20sing1.43Å1.43Å
C16C17doub1.38Å1.38ÅAromatic
O27C28sing1.43Å1.43Å
C28C29sing1.53Å1.52Å
C29O32sing1.43Å1.43Å
C29C30sing1.53Å1.53Å
C30O31sing1.43Å1.44Å
C1H1sing1.08Å1.08Å
C4H4sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C9H9sing1.09Å1.10Å
C9H9Asing1.09Å1.10Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C11H11Bsing1.09Å1.10Å
C12H12sing1.09Å1.10Å
C12H12Asing1.09Å1.10Å
C12H12Bsing1.09Å1.10Å
C13H13sing1.08Å1.08Å
O33HO33sing0.97Å0.95Å
C22H22sing1.09Å1.10Å
C26H26sing1.09Å1.10Å
C26H26Asing1.09Å1.10Å
C26H26Bsing1.09Å1.10Å
C25H25sing1.09Å1.10Å
C25H25Asing1.09Å1.10Å
C25H25Bsing1.09Å1.10Å
C24H24sing1.09Å1.10Å
C24H24Asing1.09Å1.10Å
C24H24Bsing1.09Å1.10Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C18H18sing1.09Å1.10Å
C18H18Asing1.09Å1.10Å
C18H18Bsing1.09Å1.10Å
C16H16sing1.08Å1.08Å
C17H17sing1.08Å1.08Å
C19H19sing1.09Å1.10Å
C19H19Asing1.09Å1.10Å
C19H19Bsing1.09Å1.10Å
C28H28sing1.09Å1.10Å
C28H28Asing1.09Å1.10Å
C29H29sing1.09Å1.10Å
O32HO32sing0.97Å0.95Å
C30H30sing1.09Å1.10Å
C30H30Asing1.09Å1.10Å
O31HO31sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C6119.0°119.9°
C1C2C3119.2°119.9°
C1C2O27121.7°120.0°
C2C1H1120.5°120.0°
C1C6C5122.4°120.0°
C6C1H1120.4°120.0°
C1C6H6118.8°120.0°
C3C2O27119.0°120.1°
C2C3C4118.6°120.0°
C2C3C19122.1°120.1°
C2O27C28114.3°117.0°
C4C3C19119.3°120.0°
C3C4C5122.1°120.0°
C3C4H4118.9°120.0°
C3C19H19109.5°109.5°
C3C19H19A109.4°109.5°
C3C19H19B109.4°109.4°
C4C5C6118.5°120.2°
C4C5C7118.1°119.9°
C5C4H4118.9°120.0°
C6C5C7123.3°119.9°
C5C6H6118.8°120.0°
C5C7C8116.1°109.4°
C5C7C9112.9°109.4°
C5C7C10103.6°109.4°
C8C7C9106.9°109.5°
C8C7C10110.9°109.5°
C7C8C13120.1°120.0°
C7C8C17120.5°119.9°
C9C7C10106.0°109.5°
C7C9C12119.0°109.5°
C7C9H9106.4°109.5°
C7C9H9A104.2°109.4°
C7C10C11117.8°109.5°
C7C10H10106.8°109.4°
C7C10H10A104.8°109.4°
C13C8C17119.4°120.1°
C8C13C14121.2°120.1°
C8C13H13119.4°119.9°
C8C17C16121.7°120.0°
C8C17H17119.2°120.0°
C12C9H9106.4°109.5°
C12C9H9A104.2°109.5°
C9C12H12109.5°109.5°
C9C12H12A109.5°109.4°
C9C12H12B109.4°109.4°
C11C10H10106.8°109.5°
C11C10H10A104.9°109.5°
C10C11H11109.5°109.5°
C10C11H11A109.5°109.4°
C10C11H11B109.5°109.5°
C13C14C15118.4°120.0°
C13C14C18121.4°120.0°
C14C13H13119.4°120.0°
C15C14C18120.1°120.0°
C14C15O20119.7°120.1°
C14C15C16119.0°119.9°
C14C18H18109.5°109.5°
C14C18H18A109.5°109.5°
C14C18H18B109.4°109.5°
O20C15C16121.3°120.1°
C15O20C21119.1°117.0°
C15C16C17120.2°120.0°
C15C16H16119.9°120.0°
O33C22C23111.5°109.5°
O33C22C21109.7°109.4°
C22O33HO33109.5°114.1°
O33C22H22109.9°109.5°
C23C22C21114.5°109.5°
C22C23C26110.6°109.4°
C22C23C25113.7°109.4°
C22C23C24106.0°109.5°
C23C22H22104.5°109.5°
C22C21O20109.1°109.5°
C21C22H22106.5°109.5°
C22C21H21109.6°109.5°
C22C21H21A109.7°109.4°
C26C23C25108.3°109.5°
C26C23C24109.6°109.5°
C23C26H26109.5°109.5°
C23C26H26A109.4°109.4°
C23C26H26B109.4°109.5°
C25C23C24108.6°109.5°
C23C25H25109.5°109.5°
C23C25H25A109.5°109.4°
C23C25H25B109.5°109.5°
C23C24H24109.5°109.5°
C23C24H24A109.4°109.5°
C23C24H24B109.5°109.5°
O20C21H21109.6°109.5°
O20C21H21A109.7°109.5°
C17C16H16119.9°120.0°
C16C17H17119.1°120.0°
O27C28C29113.7°109.5°
O27C28H28108.1°109.5°
O27C28H28A107.2°109.5°
C28C29O32109.8°109.5°
C28C29C30109.7°109.5°
C29C28H28108.1°109.4°
C29C28H28A107.1°109.5°
C28C29H29109.9°109.5°
O32C29C30111.9°109.5°
O32C29H29107.7°109.5°
C29O32HO32109.5°114.0°
C29C30O31111.3°109.5°
C30C29H29107.8°109.5°
C29C30H30108.9°109.5°
C29C30H30A108.5°109.5°
O31C30H30108.9°109.5°
O31C30H30A108.5°109.5°
C30O31HO31109.5°113.9°
H9C9H9A117.3°109.4°
H10C10H10A116.2°109.5°
H11C11H11A109.4°109.5°
H11C11H11B109.5°109.5°
H11AC11H11B109.5°109.5°
H12C12H12A109.4°109.5°
H12C12H12B109.5°109.5°
H12AC12H12B109.5°109.5°
H26C26H26A109.5°109.4°
H26C26H26B109.4°109.5°
H26AC26H26B109.5°109.5°
H25C25H25A109.5°109.5°
H25C25H25B109.4°109.5°
H25AC25H25B109.5°109.5°
H24C24H24A109.5°109.4°
H24C24H24B109.4°109.5°
H24AC24H24B109.5°109.4°
H21C21H21A109.2°109.5°
H18C18H18A109.4°109.5°
H18C18H18B109.5°109.4°
H18AC18H18B109.5°109.5°
H19C19H19A109.5°109.4°
H19C19H19B109.4°109.4°
H19AC19H19B109.5°109.5°
H28C28H28A112.8°109.5°
H30C30H30A110.9°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C6H1180.0°179.7°
C1C2C3O27177.5°180.0°
C1C2C3C40.5°0.1°
C1C2C3C19179.7°180.0°
C2C1C6C50.6°0.0°
C1C2O27C28109.2°0.0°
C2C1C6H6179.4°180.0°
C6C1C2C30.9°0.0°
C6C1C2O27178.4°180.0°
C1C6C5C42.5°0.0°
C1C6C5H6180.0°179.9°
C1C6C5C7177.9°179.9°
C2C3C4C19179.8°179.9°
C2C3C4C51.5°0.0°
C3C2O27C2868.2°180.0°
C3C2C1H1179.1°179.7°
C2C3C4H4178.5°180.0°
C2C3C19H19129.5°90.0°
C2C3C19H19A110.5°150.0°
C2C3C19H19B9.5°29.9°
O27C2C3C4178.0°180.0°
O27C2C3C192.1°0.1°
C2O27C28C29156.6°180.0°
O27C2C1H11.7°0.3°
C2O27C28H2883.4°60.0°
C2O27C28H28A38.4°60.0°
C3C4C5H4180.0°180.0°
C3C4C5C63.0°0.0°
C3C4C5C7178.5°180.0°
C4C3C19H1950.3°90.1°
C4C3C19H19A69.7°29.9°
C4C3C19H19B170.3°150.0°
C19C3C4C5178.4°180.0°
C19C3C4H41.7°0.0°
C3C19H19H19A120.0°120.0°
C3C19H19H19B120.0°120.0°
C3C19H19AH19B120.0°120.0°
C4C5C6C7175.3°180.0°
C4C5C7C8151.7°172.1°
C4C5C7C927.6°52.1°
C4C5C7C1086.6°67.9°
C4C5C6H6177.5°180.0°
C6C5C7C833.0°7.9°
C6C5C7C9157.0°127.9°
C6C5C7C1088.8°112.1°
C5C6C1H1179.4°179.8°
C6C5C4H4177.0°180.0°
C5C7C8C9127.1°120.0°
C5C7C8C10117.8°120.0°
C5C7C9C10112.8°120.0°
C5C7C8C13145.3°55.4°
C5C7C8C1735.8°124.9°
C5C7C9C1277.9°54.5°
C5C7C10C1167.4°53.6°
C7C5C4H41.4°0.0°
C7C5C6H62.1°0.0°
C5C7C9H9162.1°65.5°
C5C7C9H9A37.5°174.6°
C5C7C10H1052.6°173.6°
C5C7C10H10A176.4°66.4°
C8C7C9C10118.3°120.1°
C7C8C13C17179.0°179.7°
C8C7C9C1251.0°65.5°
C8C7C10C1157.7°66.4°
C7C8C13C14179.7°180.0°
C7C8C17C16179.0°179.8°
C8C7C9H969.0°174.5°
C8C7C9H9A166.4°54.6°
C8C7C10H10177.8°53.7°
C8C7C10H10A58.4°173.6°
C7C8C13H130.3°0.0°
C7C8C17H171.0°0.0°
C9C7C8C1387.6°64.6°
C9C7C8C1791.3°115.1°
C7C9C12H9120.0°120.0°
C7C9C12H9A115.4°120.0°
C9C7C10C11173.4°173.6°
C7C9H9H9A116.1°119.9°
C9C7C10H1066.5°66.4°
C9C7C10H10A57.3°53.6°
C7C9C12H1227.3°174.1°
C7C9C12H12A147.2°65.9°
C7C9C12H12B92.7°54.1°
C10C7C8C1327.5°175.3°
C10C7C8C17153.6°5.0°
C10C7C9C12169.4°174.5°
C7C10C11H10120.0°120.0°
C7C10C11H10A116.1°120.0°
C10C7C9H949.4°54.5°
C10C7C9H9A75.2°65.5°
C7C10H10H10A116.5°119.9°
C7C10C11H11129.7°55.5°
C7C10C11H11A110.3°64.5°
C7C10C11H11B9.7°175.5°
C8C13C14H13180.0°180.0°
C8C13C14C151.0°0.1°
C8C13C14C18179.5°180.0°
C13C8C17C160.1°0.5°
C13C8C17H17179.9°179.7°
C17C8C13C140.8°0.3°
C8C17C16C150.3°0.5°
C8C17C16H17180.0°179.7°
C17C8C13H13179.2°179.7°
C8C17C16H16179.7°179.7°
C12C9H9H9A116.1°120.0°
C9C12H12H12A120.0°120.0°
C9C12H12H12B120.0°120.0°
C9C12H12AH12B120.0°119.9°
C11C10H10H10A116.6°120.0°
C10C11H11H11A120.0°119.9°
C10C11H11H11B120.0°120.0°
C10C11H11AH11B120.0°120.0°
C13C14C15C18179.5°179.9°
C13C14C15O20179.8°180.0°
C13C14C15C160.6°0.1°
C13C14C18H18173.0°89.9°
C13C14C18H18A67.0°150.0°
C13C14C18H18B53.0°30.0°
C14C15O20C16179.5°179.9°
C14C15O20C21155.8°180.0°
C14C15C16C170.1°0.3°
C15C14C13H13179.0°179.9°
C15C14C18H186.5°90.0°
C15C14C18H18A113.4°30.0°
C15C14C18H18B126.5°150.0°
C14C15C16H16180.0°179.9°
C18C14C15O200.3°0.1°
C18C14C15C16179.9°180.0°
C18C14C13H130.5°0.0°
C14C18H18H18A120.0°120.0°
C14C18H18H18B120.0°120.0°
C14C18H18AH18B120.0°120.0°
C15O20C21C22173.8°180.0°
O20C15C16C17179.5°179.8°
C15O20C21H2153.7°60.0°
C15O20C21H21A66.1°60.0°
O20C15C16H160.5°0.0°
C16C15O20C2123.7°0.0°
C15C16C17H16180.0°179.8°
C15C16C17H17179.7°179.7°
O33C22C23C21125.3°119.9°
O33C22C23H22118.6°120.1°
O33C22C21H22118.8°120.0°
O33C22C23C26166.6°60.0°
O33C22C23C2544.5°180.0°
O33C22C23C2474.7°60.0°
O33C22C21O2056.1°65.0°
O33C22C21H2163.9°55.0°
O33C22C21H21A176.2°175.0°
C23C22C21H22114.9°120.0°
C22C23C26C25125.2°119.9°
C22C23C26C24116.5°120.0°
C22C23C25C24117.7°120.0°
C23C22C21O20177.7°175.0°
C23C22O33HO3351.9°59.9°
C22C23C26H2640.6°60.0°
C22C23C26H26A160.6°179.9°
C22C23C26H26B79.4°60.0°
C22C23C25H2544.9°60.0°
C22C23C25H25A75.1°180.0°
C22C23C25H25B164.9°60.0°
C22C23C24H24155.1°60.0°
C22C23C24H24A84.9°180.0°
C22C23C24H24B35.1°60.0°
C23C22C21H2162.3°65.0°
C23C22C21H21A57.5°55.1°
C21C22C23C2641.3°180.0°
C21C22C23C2580.8°60.0°
C21C22C23C24160.0°60.0°
C22C21O20H21120.0°120.0°
C22C21O20H21A120.1°120.0°
C21C22O33HO33179.8°60.1°
C22C21H21H21A120.1°120.0°
C26C23C25C24119.0°120.1°
C26C23C22H2274.8°60.0°
C23C26H26H26A120.0°119.9°
C23C26H26H26B120.0°120.0°
C23C26H26AH26B120.0°120.0°
C26C23C25H2578.4°180.0°
C26C23C25H25A161.6°60.1°
C26C23C25H25B41.5°59.9°
C26C23C24H2435.7°59.9°
C26C23C24H24A155.8°60.0°
C26C23C24H24B84.2°180.0°
C25C23C22H22163.1°60.0°
C25C23C26H2684.6°59.9°
C25C23C26H26A35.4°60.0°
C25C23C26H26B155.4°180.0°
C23C25H25H25A120.0°119.9°
C23C25H25H25B120.0°120.0°
C23C25H25AH25B120.0°120.0°
C25C23C24H2482.4°180.0°
C25C23C24H24A37.6°60.0°
C25C23C24H24B157.6°59.9°
C24C23C22H2243.9°180.0°
C24C23C26H26157.0°180.0°
C24C23C26H26A82.9°60.1°
C24C23C26H26B37.1°59.9°
C24C23C25H25162.6°59.9°
C24C23C25H25A42.6°60.0°
C24C23C25H25B77.5°180.0°
C23C24H24H24A120.0°120.0°
C23C24H24H24B120.0°120.0°
C23C24H24AH24B120.0°120.0°
O20C21C22H2262.8°55.0°
O20C21H21H21A120.2°120.0°
O27C28C29H28120.0°120.0°
O27C28C29H28A118.2°120.0°
O27C28C29O3256.1°65.0°
O27C28C29C3067.2°175.0°
O27C28H28H28A118.3°120.0°
O27C28C29H29174.5°55.0°
C28C29O32C30122.0°120.0°
C28C29O32H29119.7°120.0°
C28C29C30H29119.7°120.0°
C28C29C30O31170.1°175.0°
C29C28H28H28A118.3°120.0°
C28C29O32HO32137.6°60.0°
C28C29C30H3050.1°65.0°
C28C29C30H30A70.7°54.9°
O32C29C30H29118.2°120.0°
O32C29C30O3148.0°65.0°
O32C29C28H28176.2°55.0°
O32C29C28H28A62.0°175.0°
O32C29C30H3072.0°55.0°
O32C29C30H30A167.2°175.0°
C29C30O31H30120.0°120.0°
C29C30O31H30A119.3°120.0°
C30C29C28H2852.9°65.0°
C30C29C28H28A174.7°55.0°
C30C29O32HO32100.4°60.0°
C29C30H30H30A119.2°120.0°
C29C30O31HO3184.0°180.0°
O31C30C29H2970.2°55.0°
O31C30H30H30A119.3°120.0°
H1C1C6H60.6°0.3°
H9C9C12H1292.7°54.1°
H9C9C12H12A27.3°174.1°
H9C9C12H12B147.3°66.0°
H9AC9C12H12142.7°65.9°
H9AC9C12H12A97.3°54.1°
H9AC9C12H12B22.7°174.1°
H10C10C11H119.7°175.5°
H10C10C11H11A129.7°55.5°
H10C10C11H11B110.3°64.5°
H10AC10C11H11114.2°64.5°
H10AC10C11H11A5.8°175.5°
H10AC10C11H11B125.8°55.6°
H11C11H11AH11B120.0°120.1°
H12C12H12AH12B120.0°120.1°
HO33O33C22H2263.5°180.0°
H22C22C21H21177.2°175.0°
H22C22C21H21A57.4°65.0°
H26C26H26AH26B120.0°120.0°
H25C25H25AH25B120.0°120.0°
H24C24H24AH24B120.0°120.0°
H18C18H18AH18B120.0°119.9°
H16C16C17H170.3°0.0°
H19C19H19AH19B120.0°120.0°
H28C28C29H2965.5°175.0°
H28AC28C29H2956.3°65.0°
H29C29O32HO3217.9°180.0°
H29C29C30H30169.8°175.0°
H29C29C30H30A49.0°65.1°
H30C30O31HO31156.0°60.0°
H30AC30O31HO3135.2°59.9°

222415

PDB entries from 2024-07-10

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