YPZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C5'	C4'	doub	1.38Å	1.42Å	Aromatic
C5'	C6'	sing	1.38Å	1.42Å	Aromatic
C4'	C3'	sing	1.38Å	1.42Å	Aromatic
C6'	C1'	doub	1.39Å	1.44Å	Aromatic
C3'	C2'	doub	1.38Å	1.42Å	Aromatic
C1'	C2'	sing	1.39Å	1.43Å	Aromatic
C1'	NX1	sing	1.39Å	1.47Å
NX1	NX2	sing	1.29Å	1.40Å
OH	CZ	sing	1.36Å	1.38Å
N	CA	sing	1.47Å	1.47Å
NX2	CE2	doub	1.33Å	1.42Å
CZ	CE2	sing	1.46Å	1.44Å
CZ	CE1	doub	1.37Å	1.40Å
CE2	CD2	sing	1.42Å	1.39Å
CE1	CD1	sing	1.40Å	1.52Å
CD2	CG	doub	1.35Å	1.38Å
CD1	CG	sing	1.41Å	1.54Å
CD1	OX1	doub	1.22Å	1.23Å
CA	CB	sing	1.53Å	1.54Å
CA	C	sing	1.51Å	1.51Å
CG	CB	sing	1.51Å	1.52Å
C	O	doub	1.21Å	1.23Å
C	OXT	sing	1.34Å	1.32Å
C5'	H5'	sing	1.08Å	1.08Å
C4'	H4'	sing	1.08Å	1.08Å
C3'	H3'	sing	1.08Å	1.08Å
C2'	H2'	sing	1.08Å	1.08Å
C6'	H6'	sing	1.08Å	1.08Å
NX1	H1	sing	0.97Å	1.00Å
N	H	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
CA	HA	sing	1.09Å	1.10Å
CB	HB2	sing	1.09Å	1.10Å
CB	HB3	sing	1.09Å	1.10Å
CD2	HD2	sing	1.08Å	1.08Å
CE1	HE1	sing	1.08Å	1.08Å
OH	HH	sing	0.97Å	0.95Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4'	C5'	C6'	120.0°	120.1°
C5'	C4'	C3'	120.4°	120.2°
C4'	C5'	H5'	120.0°	119.9°
C5'	C4'	H4'	119.8°	120.0°
C5'	C6'	C1'	120.6°	119.9°
C6'	C5'	H5'	120.0°	120.0°
C5'	C6'	H6'	119.7°	120.0°
C4'	C3'	C2'	119.8°	120.1°
C3'	C4'	H4'	119.8°	119.9°
C4'	C3'	H3'	120.1°	120.0°
C6'	C1'	C2'	118.7°	119.8°
C6'	C1'	NX1	123.1°	120.1°
C1'	C6'	H6'	119.7°	120.1°
C3'	C2'	C1'	120.7°	119.9°
C2'	C3'	H3'	120.1°	120.0°
C3'	C2'	H2'	119.7°	120.1°
C2'	C1'	NX1	118.2°	120.1°
C1'	C2'	H2'	119.7°	120.0°
C1'	NX1	NX2	117.0°	120.0°
C1'	NX1	H1	121.5°	120.0°
NX1	NX2	CE2	134.0°	120.0°
NX2	NX1	H1	121.5°	120.0°
OH	CZ	CE2	122.8°	120.4°
OH	CZ	CE1	115.7°	120.4°
CZ	OH	HH	109.5°	114.0°
N	CA	CB	112.9°	109.5°
N	CA	C	115.9°	109.4°
CA	N	H	109.5°	111.0°
CA	N	H2	109.4°	111.0°
N	CA	HA	107.5°	109.4°
NX2	CE2	CZ	125.4°	120.4°
NX2	CE2	CD2	113.7°	120.4°
CE2	CZ	CE1	121.5°	119.2°
CZ	CE2	CD2	120.9°	119.2°
CZ	CE1	CD1	119.7°	120.0°
CZ	CE1	HE1	120.1°	120.0°
CE2	CD2	CG	122.8°	119.9°
CE2	CD2	HD2	118.6°	120.0°
CE1	CD1	CG	115.2°	120.8°
CE1	CD1	OX1	121.2°	119.6°
CD1	CE1	HE1	120.1°	120.0°
CD2	CG	CD1	119.9°	120.8°
CD2	CG	CB	119.7°	119.6°
CG	CD2	HD2	118.6°	120.0°
CG	CD1	OX1	123.6°	119.6°
CD1	CG	CB	120.4°	119.6°
CB	CA	C	106.4°	109.5°
CA	CB	CG	117.6°	109.5°
CB	CA	HA	106.6°	109.5°
CA	CB	HB2	107.4°	109.5°
CA	CB	HB3	107.4°	109.5°
CA	C	O	122.0°	120.0°
CA	C	OXT	113.9°	120.0°
C	CA	HA	107.0°	109.5°
CG	CB	HB2	107.4°	109.4°
CG	CB	HB3	107.4°	109.5°
O	C	OXT	124.0°	120.0°
C	OXT	HXT	109.5°	117.0°
H	N	H2	109.5°	111.0°
HB2	CB	HB3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C4'	C5'	C6'	H5'	180.0°	179.7°
C5'	C4'	C3'	H4'	180.0°	179.9°
C4'	C5'	C6'	C1'	0.1°	0.1°
C5'	C4'	C3'	C2'	0.0°	0.0°
C5'	C4'	C3'	H3'	180.0°	179.9°
C4'	C5'	C6'	H6'	179.9°	180.0°
C6'	C5'	C4'	C3'	0.1°	0.1°
C5'	C6'	C1'	H6'	180.0°	179.9°
C5'	C6'	C1'	C2'	0.0°	0.0°
C5'	C6'	C1'	NX1	179.9°	179.9°
C6'	C5'	C4'	H4'	179.9°	180.0°
C4'	C3'	C2'	H3'	180.0°	179.9°
C4'	C3'	C2'	C1'	0.1°	0.1°
C3'	C4'	C5'	H5'	179.9°	179.8°
C4'	C3'	C2'	H2'	179.9°	180.0°
C6'	C1'	C2'	C3'	0.1°	0.0°
C6'	C1'	C2'	NX1	179.9°	179.9°
C6'	C1'	NX1	NX2	133.3°	0.1°
C1'	C6'	C5'	H5'	179.9°	179.8°
C6'	C1'	C2'	H2'	179.9°	180.0°
C6'	C1'	NX1	H1	46.8°	180.0°
C3'	C2'	C1'	H2'	180.0°	180.0°
C3'	C2'	C1'	NX1	180.0°	180.0°
C2'	C3'	C4'	H4'	180.0°	179.9°
C2'	C1'	NX1	NX2	46.8°	180.0°
C1'	C2'	C3'	H3'	179.9°	180.0°
C2'	C1'	C6'	H6'	180.0°	179.9°
C2'	C1'	NX1	H1	133.1°	0.1°
C1'	NX1	NX2	H1	180.0°	179.9°
C1'	NX1	NX2	CE2	147.0°	173.8°
NX1	C1'	C2'	H2'	0.0°	0.0°
NX1	C1'	C6'	H6'	0.1°	0.0°
NX1	NX2	CE2	CZ	0.4°	8.8°
NX1	NX2	CE2	CD2	179.2°	171.3°
OH	CZ	CE2	NX2	0.4°	0.1°
OH	CZ	CE2	CE1	179.7°	179.8°
OH	CZ	CE2	CD2	180.0°	180.0°
OH	CZ	CE1	CD1	179.8°	180.0°
OH	CZ	CE1	HE1	0.2°	0.0°
N	CA	CB	C	128.3°	120.0°
N	CA	CB	HA	117.8°	120.0°
N	CA	C	HA	119.8°	119.9°
N	CA	CB	CG	26.9°	65.0°
N	CA	C	O	28.4°	20.0°
N	CA	C	OXT	153.6°	160.0°
CA	N	H	H2	120.0°	124.0°
N	CA	CB	HB2	94.3°	54.9°
N	CA	CB	HB3	148.1°	175.0°
NX2	CE2	CZ	CD2	179.6°	179.9°
NX2	CE2	CZ	CE1	179.3°	179.7°
NX2	CE2	CD2	CG	179.4°	179.9°
CE2	NX2	NX1	H1	33.1°	6.3°
NX2	CE2	CD2	HD2	0.6°	0.1°
CE2	CZ	CE1	CD1	0.0°	0.2°
CZ	CE2	CD2	CG	0.3°	0.1°
CZ	CE2	CD2	HD2	179.7°	180.0°
CE2	CZ	CE1	HE1	179.9°	179.8°
CE2	CZ	OH	HH	180.0°	180.0°
CE1	CZ	CE2	CD2	0.3°	0.2°
CZ	CE1	CD1	HE1	180.0°	180.0°
CZ	CE1	CD1	CG	0.2°	0.0°
CZ	CE1	CD1	OX1	179.7°	179.9°
CE1	CZ	OH	HH	0.2°	0.2°
CE2	CD2	CG	HD2	180.0°	180.0°
CE2	CD2	CG	CD1	0.0°	0.3°
CE2	CD2	CG	CB	179.9°	179.9°
CE1	CD1	CG	CD2	0.2°	0.3°
CE1	CD1	CG	OX1	179.9°	179.9°
CE1	CD1	CG	CB	179.8°	180.0°
CD2	CG	CD1	CB	180.0°	179.8°
CD2	CG	CD1	OX1	179.7°	179.8°
CD2	CG	CB	CA	78.1°	94.8°
CD2	CG	CB	HB2	43.1°	25.2°
CD2	CG	CB	HB3	160.7°	145.2°
CD1	CG	CB	CA	101.9°	85.0°
CD1	CG	CB	HB2	136.9°	155.0°
CD1	CG	CB	HB3	19.3°	35.0°
CD1	CG	CD2	HD2	180.0°	179.7°
CG	CD1	CE1	HE1	179.8°	180.0°
OX1	CD1	CG	CB	0.3°	0.1°
OX1	CD1	CE1	HE1	0.3°	0.1°
CB	CA	C	HA	113.7°	120.1°
CA	CB	CG	HB2	121.2°	120.0°
CA	CB	CG	HB3	121.2°	120.0°
CB	CA	C	O	98.1°	100.0°
CB	CA	C	OXT	79.9°	80.0°
CB	CA	N	H	180.0°	60.0°
CB	CA	N	H2	60.0°	64.0°
CA	CB	HB2	HB3	116.3°	120.0°
C	CA	CB	CG	155.2°	175.0°
CA	C	O	OXT	177.8°	180.0°
C	CA	N	H	56.8°	60.0°
C	CA	N	H2	63.2°	176.0°
C	CA	CB	HB2	34.0°	65.0°
C	CA	CB	HB3	83.7°	55.0°
CA	C	OXT	HXT	178.0°	180.0°
CG	CB	CA	HA	90.9°	55.0°
CG	CB	HB2	HB3	116.3°	120.0°
CB	CG	CD2	HD2	0.0°	0.0°
O	C	CA	HA	148.2°	139.9°
O	C	OXT	HXT	0.0°	0.0°
OXT	C	CA	HA	33.7°	40.0°
H5'	C5'	C4'	H4'	0.1°	0.3°
H5'	C5'	C6'	H6'	0.1°	0.3°
H4'	C4'	C3'	H3'	0.0°	0.0°
H3'	C3'	C2'	H2'	0.1°	0.0°
H	N	CA	HA	62.7°	180.0°
H2	N	CA	HA	177.3°	56.0°
HA	CA	CB	HB2	147.9°	174.9°
HA	CA	CB	HB3	30.3°	65.1°

Release date:	2013-04-24
Definition date:	2013-04-12
Last modified:	2023-11-03
Release status:	REL
Processing site:	PDBJ
Derived from:	2E2T