English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

YPT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
PT2	I2	sing	0.00Å	2.30Å
PT2	N3	sing	0.00Å	2.46Å
PT2	I1	sing	0.00Å	2.49Å
N3	H1	sing	0.00Å	1.00Å
N3	H2	sing	0.00Å	1.00Å
PT2	N1	sing	0.00Å	18.89Å
N1	H3	sing	0.00Å	0.00Å
N1	H4	sing	0.00Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
I2	PT2	N3	91.0°	90.0°
I2	PT2	I1	90.0°	90.0°
I2	PT2	N1	95.4°	90.0°
N3	PT2	I1	178.0°	90.0°
PT2	N3	H1	109.5°	90.0°
PT2	N3	H2	109.5°	90.0°
N3	PT2	N1	118.0°	90.0°
I1	PT2	N1	60.2°	90.0°
H1	N3	H2	109.5°	90.0°
PT2	N1	H3	90.0°	90.0°
PT2	N1	H4	90.0°	90.0°
H3	N1	H4	90.0°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
I2	PT2	N3	I1	119.2°	90.0°
I2	PT2	N3	N1	96.6°	90.0°
I2	PT2	I1	N1	96.2°	90.0°
I2	PT2	N3	H1	180.0°	90.0°
I2	PT2	N3	H2	60.0°	90.0°
I2	PT2	N1	H3	90.0°	90.0°
I2	PT2	N1	H4	90.0°	90.0°
N3	PT2	I1	N1	23.0°	90.0°
PT2	N3	H1	H2	120.0°	90.0°
N3	PT2	N1	H3	90.0°	90.0°
N3	PT2	N1	H4	90.0°	90.0°
I1	PT2	N3	H1	60.8°	90.0°
I1	PT2	N3	H2	59.2°	90.0°
I1	PT2	N1	H3	90.0°	90.0°
I1	PT2	N1	H4	90.0°	90.0°
H1	N3	PT2	N1	83.4°	90.0°
H2	N3	PT2	N1	36.6°	90.0°
PT2	N1	H3	H4	90.0°	90.0°

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon