Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

YPS

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C19C18doub1.38Å1.38ÅAromatic
C19C20sing1.38Å1.39ÅAromatic
C18C17sing1.38Å1.39ÅAromatic
C20C15doub1.38Å1.39ÅAromatic
C17C16doub1.38Å1.38ÅAromatic
C15C16sing1.38Å1.40ÅAromatic
C15C13sing1.51Å1.54Å
C12C13sing1.53Å1.55Å
C12C11sing1.53Å1.54Å
O01C02doub1.21Å1.23Å
C13C14sing1.53Å1.55Å
C13C21sing1.53Å1.55Å
C09C10sing1.53Å1.54Å
C09C07sing1.53Å1.54Å
C14C24sing1.53Å1.54Å
C10C04sing1.53Å1.54Å
C02C11sing1.51Å1.53Å
C02N03sing1.35Å1.35Å
C04N03sing1.47Å1.47Å
C04C05sing1.53Å1.54Å
C11C25sing1.53Å1.53Å
C11C30sing1.53Å1.54Å
N08C07sing1.47Å1.47Å
C25C24sing1.53Å1.54Å
C21C22sing1.53Å1.54Å
C07C06sing1.53Å1.54Å
C24C23sing1.53Å1.54Å
C06C05sing1.53Å1.53Å
C30C22sing1.53Å1.54Å
C22C23sing1.53Å1.54Å
C22C26sing1.53Å1.53Å
C26O27sing1.43Å1.44Å
O27C28sing1.43Å1.44Å
C28C29sing1.53Å1.52Å
C25H1sing1.09Å1.10Å
C25H2sing1.09Å1.10Å
C24H3sing1.09Å1.10Å
C23H4sing1.09Å1.10Å
C23H5sing1.09Å1.10Å
C18H6sing1.08Å1.08Å
C19H7sing1.08Å1.08Å
C17H8sing1.08Å1.08Å
C16H9sing1.08Å1.08Å
C12H10sing1.09Å1.10Å
C12H11sing1.09Å1.10Å
C10H12sing1.09Å1.10Å
C10H13sing1.09Å1.10Å
C04H14sing1.09Å1.10Å
C05H15sing1.09Å1.10Å
C05H16sing1.09Å1.10Å
C06H17sing1.09Å1.10Å
C06H18sing1.09Å1.10Å
C07H19sing1.09Å1.10Å
C09H20sing1.09Å1.10Å
C09H21sing1.09Å1.10Å
C14H22sing1.09Å1.10Å
C14H23sing1.09Å1.10Å
C20H24sing1.08Å1.08Å
C21H25sing1.09Å1.10Å
C21H26sing1.09Å1.10Å
C26H27sing1.09Å1.10Å
C26H28sing1.09Å1.10Å
C28H29sing1.09Å1.10Å
C28H30sing1.09Å1.10Å
C29H31sing1.09Å1.10Å
C29H32sing1.09Å1.10Å
C29H33sing1.09Å1.10Å
C30H34sing1.09Å1.10Å
C30H35sing1.09Å1.10Å
N03H36sing0.97Å1.00Å
N08H37sing1.01Å1.00Å
N08H38sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C18C19C20120.3°120.1°
C19C18C17119.0°120.0°
C19C18H6120.5°120.0°
C18C19H7119.9°120.0°
C19C20C15121.6°120.0°
C20C19H7119.9°120.0°
C19C20H24119.2°120.0°
C18C17C16120.4°120.0°
C17C18H6120.5°120.0°
C18C17H8119.8°120.0°
C20C15C16117.2°120.0°
C20C15C13122.4°120.0°
C15C20H24119.2°120.0°
C17C16C15121.4°120.0°
C16C17H8119.8°120.0°
C17C16H9119.3°120.0°
C16C15C13120.4°120.0°
C15C16H9119.3°120.0°
C15C13C12109.3°109.5°
C15C13C14112.1°109.5°
C15C13C21111.2°109.5°
C13C12C11111.2°109.5°
C12C13C14107.8°109.5°
C12C13C21108.5°109.5°
C13C12H10109.0°109.5°
C13C12H11109.0°109.5°
C12C11C02106.6°109.5°
C12C11C25109.6°109.5°
C12C11C30108.7°109.5°
C11C12H10109.0°109.5°
C11C12H11109.0°109.5°
O01C02C11119.9°120.0°
O01C02N03121.9°120.0°
C14C13C21107.8°109.5°
C13C14C24110.9°109.5°
C13C14H22109.1°109.6°
C13C14H23109.1°109.5°
C13C21C22111.0°109.5°
C13C21H25109.1°109.5°
C13C21H26109.1°109.5°
C10C09C07111.2°109.5°
C09C10C04112.0°109.5°
C09C10H12108.8°109.5°
C09C10H13108.8°109.5°
C10C09H20109.0°109.5°
C10C09H21109.0°109.4°
C09C07N08108.6°109.5°
C09C07C06109.9°109.5°
C09C07H19109.4°109.4°
C07C09H20109.0°109.5°
C07C09H21109.0°109.5°
C14C24C25109.5°109.4°
C14C24C23109.7°109.5°
C14C24H3109.3°109.5°
C24C14H22109.1°109.5°
C24C14H23109.1°109.4°
C10C04N03109.2°109.5°
C10C04C05110.8°109.5°
C04C10H12108.8°109.4°
C04C10H13108.8°109.5°
C10C04H14108.3°109.5°
C11C02N03118.2°120.0°
C02C11C25115.3°109.5°
C02C11C30107.0°109.4°
C02N03C04120.9°120.0°
C02N03H36119.6°120.0°
N03C04C05111.1°109.5°
N03C04H14109.1°109.4°
C04N03H36119.5°120.0°
C04C05C06111.1°109.4°
C05C04H14108.3°109.5°
C04C05H15109.1°109.4°
C04C05H16109.1°109.5°
C25C11C30109.4°109.5°
C11C25C24109.0°109.5°
C11C25H1109.6°109.5°
C11C25H2109.6°109.5°
C11C30C22110.2°109.5°
C11C30H34109.3°109.5°
C11C30H35109.3°109.5°
N08C07C06109.2°109.5°
N08C07H19110.3°109.5°
C07N08H37109.5°111.0°
C07N08H38109.5°111.0°
C25C24C23109.8°109.5°
C24C25H1109.6°109.5°
C24C25H2109.6°109.5°
C25C24H3109.3°109.5°
C21C22C30109.4°109.5°
C21C22C23109.5°109.5°
C21C22C26110.2°109.5°
C22C21H25109.1°109.4°
C22C21H26109.1°109.5°
C07C06C05111.3°109.5°
C07C06H17109.0°109.4°
C07C06H18109.0°109.5°
C06C07H19109.4°109.5°
C24C23C22109.5°109.5°
C23C24H3109.3°109.5°
C24C23H4109.5°109.5°
C24C23H5109.5°109.5°
C06C05H15109.1°109.5°
C06C05H16109.1°109.5°
C05C06H17109.0°109.5°
C05C06H18109.0°109.5°
C30C22C23108.8°109.5°
C30C22C26109.1°109.5°
C22C30H34109.3°109.4°
C22C30H35109.3°109.4°
C23C22C26109.8°109.5°
C22C23H4109.5°109.5°
C22C23H5109.4°109.5°
C22C26O27108.6°109.4°
C22C26H27109.7°109.5°
C22C26H28109.7°109.5°
C26O27C28115.4°114.0°
O27C26H27109.7°109.5°
O27C26H28109.7°109.5°
O27C28C29106.6°109.4°
O27C28H29110.2°109.5°
O27C28H30110.2°109.5°
C29C28H29110.2°109.5°
C29C28H30110.2°109.5°
C28C29H31109.5°109.5°
C28C29H32109.4°109.5°
C28C29H33109.5°109.4°
H1C25H2109.5°109.5°
H4C23H5109.5°109.5°
H10C12H11109.5°109.5°
H12C10H13109.5°109.5°
H15C05H16109.5°109.5°
H17C06H18109.5°109.5°
H20C09H21109.5°109.5°
H22C14H23109.4°109.4°
H25C21H26109.5°109.4°
H27C26H28109.5°109.5°
H29C28H30109.5°109.5°
H31C29H32109.5°109.5°
H31C29H33109.4°109.5°
H32C29H33109.5°109.5°
H34C30H35109.5°109.5°
H37N08H38109.4°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C18C19C20H7180.0°180.0°
C19C18C17H6180.0°179.6°
C18C19C20C150.1°0.5°
C19C18C17C160.4°0.4°
C19C18C17H8179.6°179.5°
C18C19C20H24179.9°179.9°
C20C19C18C170.3°0.1°
C19C20C15H24180.0°179.4°
C19C20C15C160.3°0.8°
C19C20C15C13179.6°179.7°
C20C19C18H6179.8°179.7°
C18C17C16H8180.0°179.9°
C18C17C16C150.2°0.1°
C17C18C19H7179.7°180.0°
C18C17C16H9179.8°179.9°
C20C15C16C170.2°0.5°
C20C15C16C13179.4°179.5°
C20C15C13C1248.1°120.5°
C20C15C13C1471.4°119.5°
C20C15C13C21167.8°0.6°
C15C20C19H7179.9°179.5°
C20C15C16H9179.9°179.3°
C17C16C15H9180.0°179.8°
C17C16C15C13179.5°180.0°
C16C17C18H6179.6°180.0°
C16C15C13C12132.6°60.0°
C16C15C13C14107.9°60.0°
C16C15C13C2112.8°179.9°
C15C16C17H8179.8°179.8°
C16C15C20H24179.7°179.8°
C15C13C12C14122.1°120.0°
C15C13C12C21121.4°120.0°
C15C13C12C11179.8°180.0°
C15C13C14C21122.7°120.0°
C15C13C14C24178.7°180.0°
C15C13C21C22178.0°180.0°
C13C15C16H90.5°0.2°
C15C13C12H1060.0°60.0°
C15C13C12H1159.5°60.0°
C15C13C14H2261.1°60.0°
C15C13C14H2358.5°60.0°
C13C15C20H240.4°0.3°
C15C13C21H2557.8°60.0°
C15C13C21H2661.7°60.0°
C13C12C11H10120.3°120.0°
C13C12C11H11120.3°120.0°
C12C13C14C21117.0°120.0°
C12C13C14C2458.4°60.1°
C13C12C11C02174.6°180.0°
C13C12C11C2560.0°60.0°
C13C12C11C3059.6°60.0°
C12C13C21C2257.9°60.0°
C13C12H10H11119.2°120.0°
C12C13C14H22178.6°60.0°
C12C13C14H2361.8°180.0°
C12C13C21H2562.4°60.0°
C12C13C21H26178.1°180.0°
C12C11C02O0121.8°120.0°
C11C12C13C1458.1°60.0°
C11C12C13C2158.4°60.0°
C12C11C02C25121.9°120.0°
C12C11C02C30116.2°120.0°
C12C11C02N03158.1°60.0°
C12C11C25C30119.1°120.0°
C12C11C25C2459.7°60.0°
C12C11C30C2259.8°60.0°
C12C11C25H160.2°180.0°
C12C11C25H2179.6°60.1°
C11C12H10H11119.2°120.0°
C12C11C30H34179.9°179.9°
C12C11C30H3560.3°60.0°
O01C02C11N03179.8°180.0°
O01C02N03C040.3°0.0°
O01C02C11C25143.7°120.0°
O01C02C11C3094.4°0.0°
O01C02N03H36179.6°180.0°
C13C14C24H22120.2°120.1°
C13C14C24H23120.2°120.0°
C13C14C24C2560.5°60.0°
C14C13C21C2258.7°60.0°
C13C14C24C2360.0°59.9°
C13C14C24H3179.8°180.0°
C14C13C12H1062.1°180.0°
C14C13C12H11178.4°60.0°
C13C14H22H23119.3°120.0°
C14C13C21H25178.9°180.0°
C14C13C21H2661.5°60.0°
C21C13C14C2458.6°60.0°
C13C21C22H25120.2°120.0°
C13C21C22H26120.2°120.0°
C13C21C22C3059.1°60.0°
C13C21C22C2360.0°60.0°
C13C21C22C26179.1°180.0°
C21C13C12H10178.7°60.0°
C21C13C12H1161.8°180.0°
C21C13C14H2261.6°180.0°
C21C13C14H23178.8°60.0°
C13C21H25H26119.3°120.0°
C10C09C07H20120.2°120.0°
C10C09C07H21120.2°120.0°
C09C10C04H12120.4°120.0°
C09C10C04H13120.4°120.0°
C09C10C04N03176.8°180.0°
C09C10C04C0554.1°60.0°
C10C09C07N08175.3°180.0°
C10C09C07C0655.9°59.9°
C09C10H12H13118.8°120.0°
C09C10C04H1464.5°60.0°
C10C09C07H1964.3°60.0°
C10C09H20H21119.2°119.9°
C07C09C10C0455.1°60.0°
C09C07N08C06119.8°120.0°
C09C07N08H19119.9°119.9°
C09C07C06H19120.2°119.9°
C09C07C06C0557.5°60.0°
C07C09C10H12175.5°60.0°
C07C09C10H1365.3°180.0°
C09C07C06H17177.8°60.0°
C09C07C06H1862.8°180.0°
C07C09H20H21119.2°120.0°
C09C07N08H37180.0°60.0°
C09C07N08H3860.0°64.0°
C14C24C25C1160.1°60.0°
C14C24C25C23120.5°120.0°
C14C24C25H3119.7°120.0°
C14C24C23H3119.8°120.0°
C14C24C23C2259.5°60.0°
C14C24C25H159.8°180.0°
C14C24C25H2180.0°60.1°
C14C24C23H460.5°60.0°
C14C24C23H5179.5°180.0°
C24C14H22H23119.3°119.9°
C10C04N03C02124.6°155.0°
C10C04N03C05122.5°120.0°
C10C04N03H14118.2°120.0°
C10C04C05H14118.6°120.1°
C10C04C05C0655.1°60.0°
C04C10H12H13118.8°120.0°
C10C04C05H15175.4°180.0°
C10C04C05H1665.1°60.0°
C04C10C09H20175.3°180.0°
C04C10C09H2165.2°60.0°
C10C04N03H3655.4°25.0°
C11C02N03C04179.8°180.0°
C02C11C25C30120.6°120.0°
C02C11C25C24180.0°180.0°
C02C11C30C22174.6°180.0°
C02C11C25H160.1°60.0°
C02C11C25H260.1°60.0°
C02C11C12H1065.1°60.0°
C02C11C12H1154.4°60.0°
C02C11C30H3465.3°60.0°
C02C11C30H3554.4°60.1°
C11C02N03H360.2°0.0°
C02N03C04H36180.0°180.0°
C02N03C04C05113.0°85.0°
N03C02C11C2536.2°60.0°
N03C02C11C3085.8°180.0°
C02N03C04H146.4°35.0°
N03C04C05H14119.8°120.0°
N03C04C05C06176.7°180.0°
N03C04C10H1262.8°60.0°
N03C04C10H1356.5°60.0°
N03C04C05H1563.1°60.0°
N03C04C05H1656.4°60.0°
C04C05C06C0757.5°60.0°
C04C05C06H15120.3°120.0°
C04C05C06H16120.2°120.0°
C05C04C10H12174.5°60.0°
C05C04C10H1366.2°180.0°
C04C05H15H16119.3°120.0°
C04C05C06H17177.7°60.0°
C04C05C06H1862.8°180.0°
C05C04N03H3667.1°95.0°
C11C25C24H1119.9°120.0°
C11C25C24H2119.9°120.0°
C11C25C24C2360.3°60.0°
C25C11C30C2259.9°60.0°
C11C25H1H2120.2°120.0°
C11C25C24H3179.8°180.0°
C25C11C12H1060.3°180.0°
C25C11C12H11179.8°60.0°
C25C11C30H3460.2°60.0°
C25C11C30H35180.0°180.0°
C30C11C25C2459.4°60.0°
C11C30C22C2159.8°60.0°
C11C30C22H34120.1°120.0°
C11C30C22H35120.1°120.0°
C11C30C22C2359.8°60.0°
C11C30C22C26179.6°180.0°
C30C11C25H1179.3°60.0°
C30C11C25H260.5°180.0°
C30C11C12H10179.9°60.0°
C30C11C12H1160.7°180.0°
C11C30H34H35119.7°120.1°
N08C07C06H19120.8°120.0°
N08C07C06C05176.5°180.0°
N08C07C06H1763.2°60.0°
N08C07C06H1856.2°60.0°
N08C07C09H2064.5°60.0°
N08C07C09H2155.0°60.0°
C07N08H37H38120.0°124.0°
C25C24C23H3119.8°120.0°
C25C24C23C2260.9°60.0°
C24C25H1H2120.2°120.0°
C25C24C23H4179.1°180.0°
C25C24C23H559.1°60.0°
C25C24C14H22179.2°60.1°
C25C24C14H2359.7°180.0°
C21C22C23C2459.4°60.0°
C21C22C30C23119.6°120.0°
C21C22C30C26120.6°120.0°
C21C22C23C26121.2°120.0°
C21C22C26O2756.2°180.0°
C21C22C23H460.6°60.0°
C21C22C23H5179.5°180.0°
C22C21H25H26119.3°120.0°
C21C22C26H27176.1°60.0°
C21C22C26H2863.6°60.0°
C21C22C30H34179.9°180.0°
C21C22C30H3560.3°60.0°
C07C06C05H17120.3°120.0°
C07C06C05H18120.3°120.0°
C07C06C05H15177.7°180.0°
C07C06C05H1662.8°60.0°
C07C06H17H18119.2°120.0°
C06C07C09H20176.2°180.0°
C06C07C09H2164.3°60.0°
C06C07N08H3760.2°180.0°
C06C07N08H38179.8°56.0°
C24C23C22C3060.1°60.0°
C24C23C22H4120.0°120.0°
C24C23C22H5120.0°120.0°
C24C23C22C26179.4°180.0°
C23C24C25H1179.7°60.0°
C23C24C25H259.6°180.0°
C24C23H4H5120.0°120.0°
C23C24C14H2260.2°180.0°
C23C24C14H23179.7°60.0°
C06C05C04H1463.5°60.0°
C06C05H15H16119.3°120.1°
C05C06H17H18119.2°120.0°
C05C06C07H1962.7°59.9°
C30C22C23C26119.3°120.0°
C30C22C26O27176.3°60.0°
C30C22C23H4179.9°180.0°
C30C22C23H560.0°60.0°
C30C22C21H2561.1°60.0°
C30C22C21H26179.3°179.9°
C30C22C26H2763.8°60.0°
C30C22C26H2856.5°180.0°
C22C30H34H35119.7°120.0°
C23C22C26O2764.5°60.0°
C22C23C24H3179.3°180.0°
C22C23H4H5120.0°120.0°
C23C22C21H25179.8°180.0°
C23C22C21H2660.2°60.0°
C23C22C26H2755.3°180.0°
C23C22C26H28175.6°60.0°
C23C22C30H3460.3°60.0°
C23C22C30H35179.9°180.0°
C22C26O27H27119.9°120.0°
C22C26O27H28119.8°120.0°
C22C26O27C28179.0°180.0°
C26C22C23H460.6°60.0°
C26C22C23H559.4°60.0°
C26C22C21H2558.8°60.0°
C26C22C21H2660.7°59.9°
C22C26H27H28120.4°120.0°
C26C22C30H3459.5°60.0°
C26C22C30H3560.3°60.0°
C26O27C28C29177.6°180.0°
O27C26H27H28120.4°120.0°
C26O27C28H2958.1°60.0°
C26O27C28H3062.8°60.0°
O27C28C29H29119.6°120.0°
O27C28C29H30119.5°120.0°
C28O27C26H2761.1°60.0°
C28O27C26H2859.1°60.0°
O27C28H29H30121.3°120.0°
O27C28C29H31180.0°60.0°
O27C28C29H3260.0°60.0°
O27C28C29H3360.0°180.0°
C29C28H29H30121.3°120.0°
C28C29H31H32120.0°120.0°
C28C29H31H33120.0°120.0°
C28C29H32H33120.0°120.0°
H1C25C24H359.9°60.0°
H2C25C24H360.3°60.0°
H3C24C23H459.2°60.0°
H3C24C23H560.8°60.0°
H3C24C14H2259.6°59.9°
H3C24C14H2359.9°60.0°
H6C18C19H70.2°0.4°
H6C18C17H80.4°0.0°
H7C19C20H240.1°0.0°
H8C17C16H90.3°0.0°
H12C10C04H1455.9°180.0°
H12C10C09H2064.3°60.0°
H12C10C09H2155.2°180.0°
H13C10C04H14175.1°60.0°
H13C10C09H2054.9°60.0°
H13C10C09H21174.4°60.0°
H14C04C05H1556.8°60.0°
H14C04C05H16176.3°179.9°
H14C04N03H36173.6°145.0°
H15C05C06H1762.0°60.0°
H15C05C06H1857.5°60.0°
H16C05C06H1757.5°180.0°
H16C05C06H18177.0°60.0°
H17C06C07H1957.6°180.0°
H18C06C07H19177.0°60.1°
H19C07C09H2055.9°60.0°
H19C07C09H21175.5°180.0°
H19C07N08H3760.1°59.9°
H19C07N08H3859.9°176.1°
H29C28C29H3160.4°60.0°
H29C28C29H32179.5°180.0°
H29C28C29H3359.6°60.0°
H30C28C29H3160.5°180.0°
H30C28C29H3259.6°60.0°
H30C28C29H33179.5°60.0°
H31C29H32H33120.0°120.0°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon