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YPP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
COdoub1.21Å1.25Å
CCAsing1.51Å1.53Å
COXTsing1.34Å1.25Å
NCAsing1.47Å1.47Å
NCAPsing1.35Å1.34Å
CACBsing1.53Å1.53Å
CBNAEsing1.49Å1.51Å
CBSAIsing1.84Å1.81Å
NAECAGsing1.47Å1.51Å
CAGCAHsing1.54Å1.52Å
CAGCAJsing1.51Å1.53Å
CAHSAIsing1.84Å1.77Å
CAHCAMsing1.53Å1.53Å
CAHCANsing1.53Å1.53Å
CAJOAKdoub1.21Å1.25Å
CAJOALsing1.34Å1.25Å
CAPOAQdoub1.21Å1.23Å
CAPCARsing1.51Å1.53Å
CARCASsing1.51Å1.54Å
CARNAYsing1.47Å1.48Å
CASCATdoub1.38Å1.39ÅAromatic
CASCAXsing1.38Å1.39ÅAromatic
CATCAUsing1.38Å1.39ÅAromatic
CAUCAVdoub1.38Å1.39ÅAromatic
CAVCAWsing1.38Å1.39ÅAromatic
CAWCAXdoub1.38Å1.39ÅAromatic
NAYCAZsing1.35Å1.33Å
CAZOBAdoub1.21Å1.23Å
CAZNBBsing1.35Å1.34Å
NBBCBCsing1.46Å1.49Å
NBBCBHsing1.35Å1.42Å
CBCCBDsing1.53Å1.52Å
CBDNBEsing1.46Å1.48Å
NBECBFsing1.35Å1.39Å
NBECBJsing1.46Å1.48Å
CBFOBGdoub1.21Å1.23Å
CBFCBHsing1.50Å1.40Å
CBHOBIdoub1.21Å1.23Å
CBJCBKsing1.53Å1.53Å
NHNsing0.97Å1.00Å
CAHAsing1.09Å1.10Å
CBHBsing1.09Å1.10Å
NAEHNAEsing1.01Å1.00Å
CAGHAGsing1.09Å1.10Å
CAMHAMsing1.09Å1.10Å
CAMHAMAsing1.09Å1.10Å
CAMHAMBsing1.09Å1.10Å
CANHANsing1.09Å1.10Å
CANHANAsing1.09Å1.10Å
CANHANBsing1.09Å1.10Å
CARHARsing1.09Å1.10Å
CATHATsing1.08Å1.08Å
CAUHAUsing1.08Å1.08Å
CAVHAVsing1.08Å1.08Å
CAWHAWsing1.08Å1.08Å
CAXHAXsing1.08Å1.08Å
NAYHNAYsing0.97Å1.00Å
CBCHBCsing1.09Å1.10Å
CBCHBCAsing1.09Å1.10Å
CBDHBDsing1.09Å1.10Å
CBDHBDAsing1.09Å1.10Å
CBJHBJsing1.09Å1.10Å
CBJHBJAsing1.09Å1.10Å
CBKHBKsing1.09Å1.10Å
CBKHBKAsing1.09Å1.10Å
CBKHBKBsing1.09Å1.10Å
OALHALsing0.97Å0.95Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OCCA116.5°120.1°
OCOXT126.3°120.0°
CACOXT117.3°120.0°
CCAN110.8°109.4°
CCACB110.3°109.5°
CCAHA109.0°109.5°
COXTHXT109.5°117.0°
CANCAP121.1°119.9°
NCACB112.3°109.4°
CANHN119.5°120.0°
NCAHA106.8°109.5°
NCAPOAQ123.8°120.0°
NCAPCAR115.6°120.0°
CAPNHN119.5°120.0°
CACBNAE111.4°111.2°
CACBSAI112.2°111.1°
CBCAHA107.4°109.5°
CACBHB104.9°111.0°
NAECBSAI105.1°100.9°
CBNAECAG110.4°110.9°
NAECBHB112.1°111.1°
CBNAEHNAE109.2°110.9°
CBSAICAH99.2°94.9°
SAICBHB111.3°111.1°
NAECAGCAH111.0°112.9°
NAECAGCAJ109.4°108.8°
CAGNAEHNAE109.2°111.0°
NAECAGHAG108.7°108.8°
CAHCAGCAJ109.8°108.8°
CAGCAHSAI102.6°103.5°
CAGCAHCAM111.1°110.6°
CAGCAHCAN110.5°110.6°
CAHCAGHAG108.2°108.8°
CAGCAJOAK116.8°120.0°
CAGCAJOAL117.1°120.0°
CAJCAGHAG109.8°108.7°
SAICAHCAM111.1°110.6°
SAICAHCAN110.4°110.6°
CAMCAHCAN110.9°110.7°
CAHCAMHAM109.5°109.5°
CAHCAMHAMA109.4°109.5°
CAHCAMHAMB109.5°109.5°
CAHCANHAN109.5°109.5°
CAHCANHANA109.5°109.5°
CAHCANHANB109.5°109.4°
OAKCAJOAL126.1°120.0°
CAJOALHAL109.5°117.0°
OAQCAPCAR120.6°120.0°
CAPCARCAS111.4°109.5°
CAPCARNAY110.1°109.5°
CAPCARHAR107.7°109.4°
CASCARNAY109.4°109.5°
CARCASCAT119.8°120.0°
CARCASCAX120.3°119.9°
CASCARHAR108.4°109.5°
CARNAYCAZ120.8°120.0°
NAYCARHAR109.8°109.5°
CARNAYHNAY119.6°120.0°
CATCASCAX119.8°120.0°
CASCATCAU120.1°120.0°
CASCATHAT119.9°120.0°
CASCAXCAW120.1°119.9°
CASCAXHAX120.0°120.0°
CATCAUCAV120.1°120.0°
CAUCATHAT120.0°120.0°
CATCAUHAU120.0°120.0°
CAUCAVCAW119.9°120.0°
CAVCAUHAU120.0°120.0°
CAUCAVHAV120.0°120.0°
CAVCAWCAX119.9°120.1°
CAWCAVHAV120.0°120.0°
CAVCAWHAW120.0°120.0°
CAXCAWHAW120.0°120.0°
CAWCAXHAX120.0°120.0°
NAYCAZOBA122.1°120.0°
NAYCAZNBB120.6°120.0°
CAZNAYHNAY119.6°120.0°
OBACAZNBB117.3°120.0°
CAZNBBCBC118.1°119.9°
CAZNBBCBH122.2°119.9°
CBCNBBCBH119.6°120.2°
NBBCBCCBD110.1°110.5°
NBBCBCHBC109.3°109.2°
NBBCBCHBCA109.3°109.3°
NBBCBHCBF119.8°119.1°
NBBCBHOBI120.7°120.5°
CBCCBDNBE109.2°110.5°
CBDCBCHBC109.3°109.3°
CBDCBCHBCA109.3°109.3°
CBCCBDHBD109.6°109.2°
CBCCBDHBDA109.6°109.3°
CBDNBECBF119.6°120.2°
CBDNBECBJ120.3°119.9°
NBECBDHBD109.6°109.2°
NBECBDHBDA109.6°109.3°
CBFNBECBJ120.1°119.9°
NBECBFOBG119.7°120.5°
NBECBFCBH119.9°118.9°
NBECBJCBK110.5°109.4°
NBECBJHBJ109.1°109.5°
NBECBJHBJA109.1°109.5°
OBGCBFCBH120.3°120.6°
CBFCBHOBI119.5°120.4°
CBKCBJHBJ109.1°109.4°
CBKCBJHBJA109.1°109.5°
CBJCBKHBK109.5°109.5°
CBJCBKHBKA109.5°109.5°
CBJCBKHBKB109.4°109.4°
HAMCAMHAMA109.5°109.5°
HAMCAMHAMB109.5°109.5°
HAMACAMHAMB109.5°109.4°
HANCANHANA109.5°109.5°
HANCANHANB109.4°109.5°
HANACANHANB109.5°109.4°
HBCCBCHBCA109.7°109.2°
HBDCBDHBDA109.4°109.2°
HBJCBJHBJA109.8°109.5°
HBKCBKHBKA109.5°109.5°
HBKCBKHBKB109.5°109.5°
HBKACBKHBKB109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OCCAOXT179.9°179.7°
OCCAN172.6°26.4°
OCCACB62.4°93.6°
OCCAHA55.3°146.4°
OCOXTHXT0.0°0.0°
CCANCB123.9°120.0°
CCANHA118.6°120.0°
CCANCAP134.2°85.0°
CCACBHA118.7°120.0°
CCACBNAE66.1°176.9°
CCACBSAI176.4°65.3°
CCANHN45.8°95.0°
CCACBHB55.4°58.9°
CACOXTHXT179.9°179.6°
OXTCCAN7.4°154.0°
OXTCCACB117.6°86.1°
OXTCCAHA124.7°33.9°
CANCAPHN180.0°180.0°
NCACBHA117.2°120.0°
NCACBNAE58.0°63.2°
NCACBSAI59.5°174.7°
CANCAPOAQ0.0°0.0°
CANCAPCAR177.9°180.0°
NCACBHB179.5°61.0°
CAPNCACB102.0°155.0°
NCAPOAQCAR177.8°180.0°
NCAPCARCAS79.0°60.0°
NCAPCARNAY159.4°180.0°
CAPNCAHA15.6°35.0°
NCAPCARHAR39.7°60.0°
CACBNAESAI121.7°117.9°
CACBNAEHB117.2°124.2°
CACBSAIHB117.3°124.2°
CACBNAECAG104.4°160.4°
CACBSAICAH124.1°152.5°
CBCANHN78.1°25.0°
CACBNAEHNAE15.7°36.5°
NAECBSAIHB121.5°117.9°
CBNAECAGHNAE120.0°123.8°
CBNAECAGCAH35.4°31.8°
CBNAECAGCAJ156.7°89.1°
NAECBSAICAH2.9°34.6°
NAECBCAHA175.2°56.8°
CBNAECAGHAG83.4°152.7°
SAICBNAECAG17.4°42.4°
CBSAICAHCAG21.4°18.3°
CBSAICAHCAM140.1°136.8°
CBSAICAHCAN96.5°100.2°
SAICBCAHA57.7°54.7°
SAICBNAEHNAE137.4°81.5°
NAECAGCAHCAJ121.0°120.9°
NAECAGCAHHAG119.1°120.9°
NAECAGCAJHAG119.2°118.3°
NAECAGCAHSAI34.8°3.9°
NAECAGCAHCAM153.6°114.6°
NAECAGCAHCAN82.9°122.3°
NAECAGCAJOAK4.8°18.6°
NAECAGCAJOAL175.6°161.4°
CAGNAECBHB138.4°75.4°
CAHCAGCAJHAG118.8°118.4°
CAGCAHSAICAM118.7°118.5°
CAGCAHSAICAN117.8°118.5°
CAGCAHCAMCAN123.3°123.0°
CAHCAGCAJOAK117.2°104.8°
CAHCAGCAJOAL62.5°75.2°
CAHCAGNAEHNAE155.4°92.0°
CAGCAHCAMHAM180.0°60.0°
CAGCAHCAMHAMA60.0°180.0°
CAGCAHCAMHAMB60.0°60.0°
CAGCAHCANHAN180.0°60.0°
CAGCAHCANHANA60.0°179.9°
CAGCAHCANHANB60.0°60.0°
CAJCAGCAHSAI155.9°117.0°
CAJCAGCAHCAM85.4°124.5°
CAJCAGCAHCAN38.1°1.5°
CAGCAJOAKOAL179.6°180.0°
CAJCAGNAEHNAE83.3°147.1°
CAGCAJOALHAL179.6°180.0°
SAICAHCAMCAN123.2°123.0°
CAHSAICBHB118.6°83.3°
SAICAHCAGHAG84.3°124.8°
SAICAHCAMHAM66.5°174.0°
SAICAHCAMHAMA53.5°65.9°
SAICAHCAMHAMB173.5°54.0°
SAICAHCANHAN67.2°54.1°
SAICAHCANHANA172.8°66.0°
SAICAHCANHANB52.8°174.1°
CAMCAHCAGHAG34.4°6.3°
CAHCAMHAMHAMA120.0°120.0°
CAHCAMHAMHAMB120.0°120.0°
CAHCAMHAMAHAMB120.0°120.0°
CAMCAHCANHAN56.4°177.1°
CAMCAHCANHANA63.6°57.0°
CAMCAHCANHANB176.4°63.0°
CANCAHCAGHAG158.0°116.8°
CANCAHCAMHAM56.6°63.0°
CANCAHCAMHAMA176.7°57.1°
CANCAHCAMHAMB63.3°177.0°
CAHCANHANHANA120.0°120.1°
CAHCANHANHANB120.0°120.0°
CAHCANHANAHANB120.0°119.9°
OAKCAJCAGHAG124.0°136.9°
OAKCAJOALHAL0.0°0.0°
OALCAJCAGHAG56.4°43.1°
OAQCAPCARCAS103.0°120.0°
OAQCAPCARNAY18.6°0.0°
OAQCAPNHN180.0°180.0°
OAQCAPCARHAR138.2°120.0°
CAPCARCASNAY121.9°120.0°
CAPCARCASHAR118.4°119.9°
CAPCARNAYHAR118.4°120.0°
CAPCARCASCAT107.9°100.0°
CAPCARCASCAX74.3°79.8°
CAPCARNAYCAZ161.0°155.0°
CARCAPNHN2.1°0.0°
CAPCARNAYHNAY19.0°25.0°
CASCARNAYHAR118.9°120.0°
CARCASCATCAX177.9°179.7°
CARCASCATCAU179.1°180.0°
CARCASCAXCAW179.0°179.8°
CASCARNAYCAZ76.3°85.0°
CARCASCATHAT0.9°0.0°
CARCASCAXHAX1.0°0.0°
CASCARNAYHNAY103.7°95.0°
NAYCARCASCAT130.2°140.0°
NAYCARCASCAX47.7°40.3°
CARNAYCAZHNAY180.0°180.0°
CARNAYCAZOBA0.5°4.9°
CARNAYCAZNBB179.5°175.1°
CASCATCAUHAT180.0°180.0°
CASCATCAUCAV0.5°0.0°
CATCASCAXCAW1.1°0.5°
CATCASCARHAR10.5°20.0°
CASCATCAUHAU179.5°179.9°
CATCASCAXHAX178.9°179.7°
CAXCASCATCAU1.2°0.3°
CASCAXCAWCAV0.3°0.4°
CASCAXCAWHAX180.0°179.8°
CAXCASCARHAR167.4°160.3°
CAXCASCATHAT178.8°179.7°
CASCAXCAWHAW179.7°179.7°
CATCAUCAVHAU180.0°180.0°
CATCAUCAVCAW0.4°0.0°
CATCAUCAVHAV179.6°179.9°
CAUCAVCAWHAV180.0°179.9°
CAUCAVCAWCAX0.4°0.2°
CAVCAUCATHAT179.5°180.0°
CAUCAVCAWHAW179.5°179.9°
CAVCAWCAXHAW180.0°179.9°
CAWCAVCAUHAU179.6°180.0°
CAVCAWCAXHAX179.7°179.8°
CAXCAWCAVHAV179.5°179.9°
NAYCAZOBANBB180.0°180.0°
NAYCAZNBBCBC169.6°5.0°
NAYCAZNBBCBH12.7°174.7°
CAZNAYCARHAR42.6°35.0°
OBACAZNBBCBC10.4°175.0°
OBACAZNBBCBH167.3°5.3°
OBACAZNAYHNAY179.5°175.1°
CAZNBBCBCCBH177.7°179.7°
CAZNBBCBCCBD147.0°142.5°
CAZNBBCBHCBF178.5°174.3°
CAZNBBCBHOBI2.4°6.0°
NBBCAZNAYHNAY0.5°4.9°
CAZNBBCBCHBC27.0°97.2°
CAZNBBCBCHBCA93.0°22.2°
NBBCBCCBDHBC120.0°120.2°
NBBCBCCBDHBCA120.0°120.3°
NBBCBCCBDNBE52.3°51.5°
CBCNBBCBHCBF3.8°5.4°
CBCNBBCBHOBI175.2°174.3°
NBBCBCHBCHBCA119.8°119.5°
NBBCBCCBDHBD67.7°171.8°
NBBCBCCBDHBDA172.3°68.8°
CBHNBBCBCCBD35.3°37.2°
NBBCBHCBFNBE9.4°12.3°
NBBCBHCBFOBG170.4°167.9°
NBBCBHCBFOBI179.0°179.7°
CBHNBBCBCHBC155.3°83.1°
CBHNBBCBCHBCA84.7°157.5°
CBCCBDNBEHBD120.0°120.2°
CBCCBDNBEHBDA120.0°120.3°
CBCCBDNBECBF43.4°37.5°
CBCCBDNBECBJ137.1°142.4°
CBDCBCHBCHBCA119.8°119.5°
CBCCBDHBDHBDA120.1°119.5°
CBDNBECBFCBJ179.5°179.9°
CBDNBECBFOBG168.0°174.0°
CBDNBECBFCBH12.2°5.8°
CBDNBECBJCBK82.5°90.0°
NBECBDCBCHBC172.3°68.7°
NBECBDCBCHBCA67.7°171.8°
NBECBDHBDHBDA120.1°119.5°
CBDNBECBJHBJ37.5°150.0°
CBDNBECBJHBJA157.5°30.0°
NBECBFOBGCBH179.8°179.8°
NBECBFCBHOBI171.6°168.0°
CBFNBECBJCBK97.0°90.0°
CBFNBECBDHBD76.6°157.8°
CBFNBECBDHBDA163.4°82.8°
CBFNBECBJHBJ143.0°29.9°
CBFNBECBJHBJA23.0°150.0°
CBJNBECBFOBG11.5°6.0°
CBJNBECBFCBH168.3°174.2°
NBECBJCBKHBJ120.0°120.0°
NBECBJCBKHBJA120.0°120.0°
CBJNBECBDHBD102.9°22.2°
CBJNBECBDHBDA17.1°97.3°
NBECBJHBJHBJA119.6°120.1°
NBECBJCBKHBK180.0°60.0°
NBECBJCBKHBKA60.0°180.0°
NBECBJCBKHBKB60.0°60.0°
OBGCBFCBHOBI8.6°11.8°
CBKCBJHBJHBJA119.6°120.0°
CBJCBKHBKHBKA120.0°120.0°
CBJCBKHBKHBKB120.0°120.0°
CBJCBKHBKAHBKB120.0°119.9°
HNNCAHA164.4°145.0°
HACACBHB63.3°178.9°
HBCBNAEHNAE101.6°160.7°
HNAENAECAGHAG36.6°28.9°
HAMCAMHAMAHAMB120.0°120.0°
HANCANHANAHANB120.0°120.0°
HARCARNAYHNAY137.4°145.0°
HATCATCAUHAU0.5°0.0°
HAUCAUCAVHAV0.4°0.1°
HAVCAVCAWHAW0.5°0.0°
HAWCAWCAXHAX0.3°0.1°
HBCCBCCBDHBD52.3°51.5°
HBCCBCCBDHBDA67.7°171.0°
HBCACBCCBDHBD172.3°67.9°
HBCACBCCBDHBDA52.3°51.5°
HBJCBJCBKHBK60.0°60.0°
HBJCBJCBKHBKA180.0°60.0°
HBJCBJCBKHBKB60.0°180.0°
HBJACBJCBKHBK60.0°180.0°
HBJACBJCBKHBKA60.0°59.9°
HBJACBJCBKHBKB180.0°60.0°
HBKCBKHBKAHBKB120.0°120.0°

223166

PDB entries from 2024-07-31

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