Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

YPM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C19C18doub1.38Å1.39ÅAromatic
C19C20sing1.38Å1.39ÅAromatic
C18C17sing1.38Å1.39ÅAromatic
C20C15doub1.38Å1.40ÅAromatic
C17C16doub1.38Å1.39ÅAromatic
C15C16sing1.38Å1.40ÅAromatic
C15C13sing1.51Å1.53Å
C12C13sing1.53Å1.54Å
C12C11sing1.53Å1.54Å
O01C02doub1.21Å1.22Å
C13C14sing1.53Å1.54Å
C13C21sing1.53Å1.54Å
C14C24sing1.53Å1.54Å
C09C10sing1.53Å1.54Å
C09C07sing1.53Å1.55Å
C10C04sing1.53Å1.54Å
C02C11sing1.51Å1.52Å
C02N03sing1.35Å1.35Å
N08C07sing1.47Å1.48Å
C11C25sing1.53Å1.54Å
C11C32sing1.53Å1.54Å
C25C24sing1.53Å1.54Å
C24C23sing1.53Å1.53Å
C21C22sing1.53Å1.55Å
C04N03sing1.47Å1.48Å
C04C05sing1.53Å1.54Å
C07C06sing1.53Å1.54Å
C32C22sing1.53Å1.55Å
C06C05sing1.53Å1.54Å
C22C23sing1.53Å1.55Å
C22C26sing1.51Å1.54Å
C27C26doub1.38Å1.40ÅAromatic
C27C28sing1.38Å1.39ÅAromatic
C26C31sing1.38Å1.39ÅAromatic
C28C29doub1.38Å1.39ÅAromatic
C31C30doub1.38Å1.39ÅAromatic
C29C30sing1.38Å1.38ÅAromatic
C10H1sing1.09Å1.10Å
C10H2sing1.09Å1.10Å
C04H3sing1.09Å1.10Å
C05H4sing1.09Å1.10Å
C05H5sing1.09Å1.10Å
C06H6sing1.09Å1.10Å
C06H7sing1.09Å1.10Å
C07H8sing1.09Å1.10Å
C09H9sing1.09Å1.10Å
C09H10sing1.09Å1.10Å
C12H11sing1.09Å1.10Å
C12H12sing1.09Å1.10Å
C14H13sing1.09Å1.10Å
C14H14sing1.09Å1.10Å
C16H15sing1.08Å1.08Å
C17H16sing1.08Å1.08Å
C18H17sing1.08Å1.08Å
C19H18sing1.08Å1.08Å
C20H19sing1.08Å1.08Å
C21H20sing1.09Å1.10Å
C21H21sing1.09Å1.10Å
C23H22sing1.09Å1.10Å
C23H23sing1.09Å1.10Å
C24H24sing1.09Å1.10Å
C25H25sing1.09Å1.10Å
C25H26sing1.09Å1.10Å
C27H27sing1.08Å1.08Å
C28H28sing1.08Å1.08Å
C29H29sing1.08Å1.08Å
C30H30sing1.08Å1.08Å
C31H31sing1.08Å1.08Å
C32H32sing1.09Å1.10Å
C32H33sing1.09Å1.10Å
N03H34sing0.97Å1.00Å
N08H35sing1.01Å1.00Å
N08H36sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C18C19C20120.0°120.0°
C19C18C17119.4°120.0°
C19C18H17120.3°120.0°
C18C19H18120.0°120.0°
C19C20C15121.5°120.0°
C20C19H18120.0°120.0°
C19C20H19119.3°120.0°
C18C17C16120.2°120.0°
C18C17H16119.9°120.0°
C17C18H17120.3°120.0°
C20C15C16117.6°120.0°
C20C15C13122.6°120.0°
C15C20H19119.2°120.0°
C17C16C15121.3°120.0°
C17C16H15119.4°120.0°
C16C17H16119.9°120.0°
C16C15C13119.9°120.0°
C15C16H15119.3°120.0°
C15C13C12110.7°109.5°
C15C13C14111.0°109.5°
C15C13C21110.3°109.5°
C13C12C11111.1°109.5°
C12C13C14107.9°109.4°
C12C13C21108.1°109.5°
C13C12H11109.1°109.5°
C13C12H12109.0°109.5°
C12C11C02108.0°109.5°
C12C11C25110.1°109.5°
C12C11C32109.1°109.5°
C11C12H11109.0°109.5°
C11C12H12109.1°109.5°
O01C02C11121.2°120.0°
O01C02N03121.4°120.0°
C14C13C21108.6°109.5°
C13C14C24111.0°109.5°
C13C14H13109.1°109.4°
C13C14H14109.1°109.5°
C13C21C22111.0°109.5°
C13C21H20109.1°109.5°
C13C21H21109.1°109.5°
C14C24C25110.2°109.5°
C14C24C23109.1°109.5°
C24C14H13109.1°109.4°
C24C14H14109.1°109.4°
C14C24H24109.2°109.5°
C10C09C07113.2°109.5°
C09C10C04110.0°109.5°
C09C10H1109.4°109.4°
C09C10H2109.4°109.5°
C10C09H9108.5°109.5°
C10C09H10108.5°109.4°
C09C07N08108.7°109.5°
C09C07C06112.9°109.5°
C09C07H8108.4°109.5°
C07C09H9108.6°109.5°
C07C09H10108.6°109.5°
C10C04N03111.2°109.4°
C10C04C05109.3°109.5°
C04C10H1109.3°109.5°
C04C10H2109.3°109.5°
C10C04H3107.3°109.5°
C11C02N03117.3°120.0°
C02C11C25108.6°109.5°
C02C11C32111.8°109.5°
C02N03C04119.9°120.0°
C02N03H34120.1°120.0°
N08C07C06108.9°109.5°
N08C07H8109.3°109.5°
C07N08H35109.5°111.0°
C07N08H36109.4°111.0°
C25C11C32109.2°109.5°
C11C25C24108.5°109.5°
C11C25H25109.7°109.4°
C11C25H26109.7°109.5°
C11C32C22110.2°109.5°
C11C32H32109.3°109.5°
C11C32H33109.3°109.5°
C25C24C23109.8°109.4°
C25C24H24109.2°109.5°
C24C25H25109.7°109.5°
C24C25H26109.7°109.5°
C24C23C22110.0°109.5°
C24C23H22109.3°109.5°
C24C23H23109.3°109.5°
C23C24H24109.3°109.5°
C21C22C32108.4°109.5°
C21C22C23110.0°109.5°
C21C22C26108.3°109.5°
C22C21H20109.1°109.5°
C22C21H21109.1°109.5°
N03C04C05113.4°109.5°
N03C04H3108.0°109.5°
C04N03H34120.0°120.0°
C04C05C06110.4°109.4°
C05C04H3107.4°109.5°
C04C05H4109.2°109.4°
C04C05H5109.2°109.5°
C07C06C05112.9°109.5°
C07C06H6108.6°109.5°
C07C06H7108.6°109.5°
C06C07H8108.5°109.5°
C32C22C23107.9°109.5°
C32C22C26115.3°109.5°
C22C32H32109.3°109.4°
C22C32H33109.3°109.5°
C06C05H4109.3°109.5°
C06C05H5109.3°109.5°
C05C06H6108.6°109.5°
C05C06H7108.6°109.4°
C23C22C26106.9°109.5°
C22C23H22109.4°109.5°
C22C23H23109.4°109.4°
C22C26C27119.8°120.0°
C22C26C31122.7°120.0°
C26C27C28121.4°120.0°
C27C26C31117.5°120.0°
C26C27H27119.3°120.0°
C27C28C29120.4°120.0°
C28C27H27119.3°120.0°
C27C28H28119.8°120.0°
C26C31C30121.3°120.0°
C26C31H31119.4°120.0°
C28C29C30119.1°120.0°
C29C28H28119.8°120.0°
C28C29H29120.4°120.0°
C31C30C29120.3°120.0°
C31C30H30119.9°120.0°
C30C31H31119.3°120.0°
C30C29H29120.4°120.0°
C29C30H30119.9°119.9°
H1C10H2109.5°109.5°
H4C05H5109.5°109.5°
H6C06H7109.5°109.5°
H9C09H10109.5°109.5°
H11C12H12109.5°109.4°
H13C14H14109.5°109.5°
H20C21H21109.4°109.5°
H22C23H23109.5°109.5°
H25C25H26109.5°109.4°
H32C32H33109.5°109.5°
H35N08H36109.5°111.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C18C19C20H18180.0°179.8°
C19C18C17H17180.0°180.0°
C18C19C20C150.3°0.5°
C19C18C17C160.6°0.0°
C19C18C17H16179.4°180.0°
C18C19C20H19179.7°180.0°
C20C19C18C170.2°0.2°
C19C20C15H19180.0°179.5°
C19C20C15C160.3°0.5°
C19C20C15C13179.8°179.7°
C20C19C18H17179.8°179.8°
C18C17C16H16180.0°180.0°
C18C17C16C150.6°0.0°
C18C17C16H15179.4°180.0°
C17C18C19H18179.8°180.0°
C20C15C16C170.1°0.3°
C20C15C16C13179.5°179.8°
C20C15C13C1257.0°120.3°
C20C15C13C1462.9°119.8°
C20C15C13C21176.6°0.2°
C20C15C16H15179.9°179.8°
C15C20C19H18179.7°179.7°
C17C16C15H15180.0°180.0°
C17C16C15C13179.4°180.0°
C16C17C18H17179.4°180.0°
C16C15C13C12123.6°60.0°
C16C15C13C14116.6°60.0°
C16C15C13C213.9°180.0°
C15C16C17H16179.5°180.0°
C16C15C20H19179.7°180.0°
C15C13C12C14121.7°120.0°
C15C13C12C21121.0°120.0°
C15C13C12C11179.8°180.0°
C15C13C14C21121.5°120.0°
C15C13C14C24179.5°180.0°
C15C13C21C22179.3°180.0°
C15C13C12H1159.6°60.0°
C15C13C12H1259.9°60.0°
C15C13C14H1360.3°60.1°
C15C13C14H1459.3°60.0°
C13C15C16H150.6°0.0°
C13C15C20H190.2°0.2°
C15C13C21H2060.5°60.0°
C15C13C21H2159.0°60.0°
C13C12C11H11120.2°120.0°
C13C12C11H12120.2°120.0°
C12C13C14C21117.0°120.0°
C12C13C14C2458.0°60.0°
C13C12C11C02178.6°180.0°
C13C12C11C2560.1°60.0°
C13C12C11C3259.7°60.0°
C12C13C21C2259.5°60.0°
C13C12H11H12119.3°120.0°
C12C13C14H13178.2°179.9°
C12C13C14H1462.2°60.0°
C12C13C21H2060.7°60.0°
C12C13C21H21179.7°180.0°
C12C11C02O0113.3°120.0°
C11C12C13C1458.1°60.0°
C11C12C13C2159.2°60.0°
C12C11C02C25119.4°120.0°
C12C11C02C32120.0°120.0°
C12C11C02N03165.5°60.0°
C12C11C25C32119.8°120.0°
C12C11C25C2459.3°60.0°
C12C11C32C2259.5°60.0°
C11C12H11H12119.3°120.0°
C12C11C25H2560.5°60.1°
C12C11C25H26179.2°180.0°
C12C11C32H32179.6°180.0°
C12C11C32H3360.6°60.0°
O01C02C11N03178.8°180.0°
O01C02C11C25132.7°120.0°
O01C02C11C32106.7°0.0°
O01C02N03C040.9°0.0°
O01C02N03H34179.1°180.0°
C13C14C24H13120.2°120.0°
C13C14C24H14120.2°120.1°
C13C14C24C2560.1°60.0°
C13C14C24C2360.6°60.0°
C14C13C21C2257.4°60.0°
C14C13C12H1162.1°180.0°
C14C13C12H12178.4°60.0°
C13C14H13H14119.3°120.1°
C14C13C21H20177.6°180.0°
C14C13C21H2162.9°60.0°
C13C14C24H24180.0°180.0°
C21C13C14C2459.0°60.0°
C13C21C22H20120.3°120.0°
C13C21C22H21120.2°120.0°
C13C21C22C3259.9°60.0°
C13C21C22C2357.8°60.0°
C13C21C22C26174.3°180.0°
C21C13C12H11179.4°60.0°
C21C13C12H1261.1°180.0°
C21C13C14H1361.2°60.0°
C21C13C14H14179.2°180.0°
C13C21H20H21119.3°120.0°
C14C24C25C1159.3°60.0°
C14C24C25C23120.3°120.0°
C14C24C25H24119.9°120.0°
C14C24C23H24119.3°120.0°
C14C24C23C2259.6°60.0°
C24C14H13H14119.3°120.0°
C14C24C23H2260.5°180.0°
C14C24C23H23179.7°60.0°
C14C24C25H2560.5°60.0°
C14C24C25H26179.1°180.0°
C10C09C07H9120.6°120.0°
C10C09C07H10120.5°120.0°
C09C10C04H1120.1°120.0°
C09C10C04H2120.1°120.0°
C10C09C07N08167.5°180.0°
C09C10C04N03172.7°180.0°
C09C10C04C0561.4°60.0°
C10C09C07C0646.5°60.0°
C09C10H1H2119.8°120.0°
C09C10C04H354.7°60.0°
C10C09C07H873.8°60.0°
C10C09H9H10118.3°120.0°
C07C09C10C0454.1°60.0°
C09C07N08C06123.4°120.0°
C09C07N08H8118.2°120.0°
C09C07C06H8120.2°120.0°
C09C07C06C0546.5°60.0°
C07C09C10H1174.2°60.0°
C07C09C10H266.0°180.0°
C09C07C06H6167.0°60.0°
C09C07C06H774.0°180.0°
C07C09H9H10118.3°120.0°
C09C07N08H35180.0°60.0°
C09C07N08H3660.0°64.0°
C10C04N03C02101.3°155.0°
C10C04N03C05123.6°120.0°
C10C04N03H3117.6°120.0°
C10C04C05H3116.1°120.0°
C10C04C05C0661.8°60.0°
C04C10H1H2119.7°120.0°
C10C04C05H4178.0°180.0°
C10C04C05H558.3°60.0°
C04C10C09H9174.7°180.0°
C04C10C09H1066.5°60.0°
C10C04N03H3478.7°25.0°
C02C11C25C32122.2°120.0°
C02C11C25C24177.4°180.0°
C11C02N03C04179.7°180.0°
C02C11C32C22178.8°180.0°
C02C11C12H1158.3°60.0°
C02C11C12H1261.2°60.0°
C02C11C25H2557.5°60.0°
C02C11C25H2662.8°59.9°
C02C11C32H3261.1°60.0°
C02C11C32H3358.7°60.0°
C11C02N03H340.3°0.1°
N03C02C11C2546.1°60.1°
N03C02C11C3274.5°180.0°
C02N03C04H34180.0°180.0°
C02N03C04C05135.1°85.0°
C02N03C04H316.2°35.0°
N08C07C06H8118.9°120.0°
N08C07C06C05167.4°180.0°
N08C07C06H672.1°60.0°
N08C07C06H746.9°60.0°
N08C07C09H971.9°60.0°
N08C07C09H1046.9°60.0°
C07N08H35H36120.0°124.0°
C11C25C24H25119.9°120.0°
C11C25C24H26119.8°120.0°
C11C25C24C2360.9°60.0°
C25C11C32C2260.9°60.0°
C25C11C12H1160.1°180.0°
C25C11C12H12179.6°60.0°
C11C25C24H24179.2°180.0°
C11C25H25H26120.4°119.9°
C25C11C32H3259.2°60.0°
C25C11C32H33178.9°180.0°
C32C11C25C2460.5°60.0°
C11C32C22C2159.4°60.0°
C11C32C22H32120.1°120.0°
C11C32C22H33120.1°120.0°
C11C32C22C2359.6°60.0°
C11C32C22C26179.0°180.0°
C32C11C12H11180.0°60.0°
C32C11C12H1260.5°180.0°
C32C11C25H25179.7°180.0°
C32C11C25H2659.4°60.0°
C11C32H32H33119.7°120.0°
C25C24C23H24119.8°120.0°
C25C24C23C2261.3°60.0°
C25C24C14H13179.7°179.9°
C25C24C14H1460.2°60.1°
C25C24C23H22178.6°60.0°
C25C24C23H2358.8°180.0°
C24C25H25H26120.4°120.0°
C24C23C22C2158.5°60.0°
C24C23C22C3259.6°60.0°
C24C23C22H22120.1°120.0°
C24C23C22H23120.1°120.0°
C24C23C22C26175.9°180.0°
C23C24C14H1359.6°60.0°
C23C24C14H14179.2°180.0°
C24C23H22H23119.7°120.0°
C23C24C25H25179.2°180.0°
C23C24C25H2658.9°60.0°
C21C22C32C23119.0°120.0°
C21C22C32C26121.6°120.0°
C21C22C23C26117.4°120.0°
C21C22C26C276.0°0.3°
C21C22C26C31172.6°179.9°
C22C21H20H21119.3°120.0°
C21C22C23H2261.6°180.0°
C21C22C23H23178.6°60.0°
C21C22C32H32179.5°180.0°
C21C22C32H3360.7°60.0°
N03C04C05H3119.2°120.0°
N03C04C05C06173.5°180.0°
N03C04C10H152.6°60.0°
N03C04C10H267.2°60.0°
N03C04C05H453.4°60.0°
N03C04C05H566.3°60.0°
C04C05C06C0754.4°60.0°
C04C05C06H4120.1°120.0°
C04C05C06H5120.2°120.0°
C05C04C10H1178.5°60.0°
C05C04C10H258.7°180.0°
C04C05H4H5119.5°120.0°
C04C05C06H6174.9°60.0°
C04C05C06H766.1°180.0°
C05C04N03H3444.9°95.0°
C07C06C05H6120.5°120.0°
C07C06C05H7120.5°120.0°
C07C06C05H4174.6°180.0°
C07C06C05H565.7°60.0°
C07C06H6H7118.4°120.0°
C06C07C09H9167.1°180.0°
C06C07C09H1074.0°60.0°
C06C07N08H3556.6°179.9°
C06C07N08H36176.6°56.0°
C32C22C23C26124.6°120.0°
C32C22C26C27115.6°120.2°
C32C22C26C3165.7°60.0°
C32C22C21H2060.3°60.0°
C32C22C21H21179.8°180.0°
C32C22C23H22179.6°60.0°
C32C22C23H2360.5°180.0°
C22C32H32H33119.7°120.0°
C06C05C04H354.3°60.0°
C06C05H4H5119.6°120.0°
C05C06H6H7118.4°120.0°
C05C06C07H873.7°60.0°
C23C22C26C27124.5°119.8°
C23C22C26C3154.2°60.0°
C23C22C21H20178.0°180.0°
C23C22C21H2162.5°60.0°
C22C23H22H23119.8°120.0°
C22C23C24H24178.8°180.0°
C23C22C32H3260.5°60.0°
C23C22C32H33179.7°180.0°
C22C26C27C31178.7°179.8°
C22C26C27C28179.6°180.0°
C22C26C31C30179.4°179.8°
C26C22C21H2065.5°60.0°
C26C22C21H2154.0°60.0°
C26C22C23H2255.8°60.0°
C26C22C23H2364.1°60.0°
C22C26C27H270.4°0.0°
C22C26C31H310.6°0.1°
C26C22C32H3258.9°60.0°
C26C22C32H3360.9°60.0°
C26C27C28H27180.0°179.9°
C26C27C28C290.5°0.1°
C27C26C31C300.7°0.4°
C26C27C28H28179.5°180.0°
C27C26C31H31179.3°179.7°
C28C27C26C310.9°0.2°
C27C28C29H28180.0°179.9°
C27C28C29C300.1°0.1°
C27C28C29H29179.8°179.9°
C26C31C30H31180.0°179.9°
C26C31C30C290.2°0.3°
C31C26C27H27179.1°179.8°
C26C31C30H30179.8°179.8°
C28C29C30C310.3°0.1°
C28C29C30H29180.0°180.0°
C29C28C27H27179.5°180.0°
C28C29C30H30179.7°180.0°
C31C30C29H30180.0°179.9°
C31C30C29H29179.7°179.9°
C30C29C28H28179.9°180.0°
C29C30C31H31179.8°179.8°
H1C10C04H365.4°180.0°
H1C10C09H965.2°60.0°
H1C10C09H1053.6°180.0°
H2C10C04H3174.8°60.0°
H2C10C09H954.6°60.0°
H2C10C09H10173.5°60.0°
H3C04C05H465.9°60.0°
H3C04C05H5174.4°180.0°
H3C04N03H34163.7°145.0°
H4C05C06H664.9°60.0°
H4C05C06H754.1°60.0°
H5C05C06H654.8°180.0°
H5C05C06H7173.8°60.1°
H6C06C07H846.8°180.0°
H7C06C07H8165.8°60.0°
H8C07C09H946.8°60.0°
H8C07C09H10165.7°180.0°
H8C07N08H3561.8°59.9°
H8C07N08H3658.2°176.0°
H13C14C24H2459.7°60.0°
H14C14C24H2459.8°60.0°
H15C16C17H160.5°0.0°
H16C17C18H170.6°0.0°
H17C18C19H180.2°0.1°
H18C19C20H190.3°0.2°
H22C23C24H2458.7°60.0°
H23C23C24H2461.1°60.0°
H24C24C25H2559.4°60.0°
H24C24C25H2660.9°60.0°
H27C27C28H280.5°0.1°
H28C28C29H290.2°0.0°
H29C29C30H300.3°0.0°
H30C30C31H310.1°0.1°

248335

PDB entries from 2026-01-28

PDB statisticsPDBj update infoContact PDBjnumon