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YPG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OAJPBFdoub1.48Å1.51Å
OAIPBFsing1.61Å1.50Å
OAFCAZsing1.43Å1.40Å
PBFCAZsing1.82Å1.85Å
PBFOAEsing1.61Å1.51Å
CAZCANsing1.53Å1.52Å
CANOATsing1.43Å1.39Å
OATCBAsing1.43Å1.45Å
CBACAOsing1.54Å1.33Å
CBACBBsing1.55Å1.54Å
CAONBCsing1.47Å1.61Å
OAHPBEdoub1.48Å1.51Å
C8N7doub1.30Å1.33ÅAromatic
C8N9sing1.36Å1.33ÅAromatic
N7C5sing1.35Å1.33ÅAromatic
CBBN9sing1.47Å1.39Å
CBBCAPsing1.55Å1.53Å
N9C4sing1.37Å1.31ÅAromatic
CALCAMsing1.53Å1.52Å
CALCAUsing1.51Å1.53Å
NBCCAUsing1.35Å1.45Å
NBCCAPsing1.47Å1.33Å
C5C4doub1.40Å1.38ÅAromatic
C5C6sing1.41Å1.39Å
C4N3sing1.34Å1.32Å
CAMPBEsing1.82Å1.86Å
PBEOAGsing1.61Å1.51Å
PBEOADsing1.61Å1.51Å
CAUOABdoub1.21Å1.19Å
O6C6doub1.22Å1.39Å
C6N1sing1.35Å1.32Å
N3C2doub1.31Å1.30Å
N1C2sing1.36Å1.33Å
C2N2sing1.37Å1.45Å
C8H1sing1.08Å1.08Å
N1H2sing0.97Å1.00Å
N2H3sing0.97Å1.00Å
N2H4sing0.97Å1.00Å
OAIH5sing0.97Å0.95Å
OAEH6sing0.97Å0.95Å
CAZH7sing1.09Å1.10Å
OAFH8sing0.97Å0.95Å
CANH9sing1.09Å1.10Å
CANH10sing1.09Å1.10Å
CBAH11sing1.09Å1.10Å
CAOH12sing1.09Å1.10Å
CAOH13sing1.09Å1.10Å
CALH14sing1.09Å1.10Å
CALH15sing1.09Å1.10Å
CAMH16sing1.09Å1.10Å
CAMH17sing1.09Å1.10Å
OAGH18sing0.97Å0.95Å
OADH19sing0.97Å0.95Å
CAPH20sing1.09Å1.10Å
CAPH21sing1.09Å1.10Å
CBBH22sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OAJPBFOAI107.5°109.5°
OAJPBFCAZ112.6°109.4°
OAJPBFOAE111.3°109.5°
OAIPBFCAZ107.8°109.4°
OAIPBFOAE110.4°109.5°
PBFOAIH5109.5°114.0°
OAFCAZPBF111.8°109.5°
OAFCAZCAN111.1°109.5°
OAFCAZH7111.1°109.4°
CAZOAFH8109.5°114.0°
CAZPBFOAE107.1°109.5°
PBFCAZCAN107.2°109.5°
PBFCAZH7105.8°109.5°
PBFOAEH6109.5°114.0°
CAZCANOAT107.6°109.5°
CANCAZH7109.5°109.5°
CAZCANH9110.0°109.5°
CAZCANH10110.0°109.5°
CANOATCBA115.7°114.0°
OATCANH9109.9°109.4°
OATCANH10109.9°109.5°
OATCBACAO109.3°110.7°
OATCBACBB101.6°110.7°
OATCBAH11114.5°110.7°
CAOCBACBB99.5°102.9°
CBACAONBC108.2°107.3°
CAOCBAH11116.9°110.7°
CBACAOH12109.8°109.9°
CBACAOH13109.8°109.9°
CBACBBN9116.1°111.0°
CBACBBCAP103.5°101.6°
CBBCBAH11113.0°110.9°
CBACBBH22104.2°111.0°
CAONBCCAU124.6°125.7°
CAONBCCAP107.1°108.7°
NBCCAOH12109.8°109.9°
NBCCAOH13109.8°109.9°
OAHPBECAM107.9°109.5°
OAHPBEOAG109.3°109.5°
OAHPBEOAD109.9°109.5°
N7C8N9110.7°109.8°
C8N7C5106.4°109.4°
N7C8H1124.6°125.1°
C8N9CBB131.7°126.3°
C8N9C4107.2°107.5°
N9C8H1124.6°125.1°
N7C5C4107.5°107.3°
N7C5C6135.8°134.2°
N9CBBCAP121.0°111.0°
CBBN9C4120.9°126.3°
N9CBBH22105.9°110.9°
CBBCAPNBC98.3°104.8°
CBBCAPH20112.2°110.4°
CBBCAPH21112.2°110.5°
CAPCBBH22104.3°111.0°
N9C4C5108.1°106.1°
N9C4N3130.0°134.2°
CAMCALCAU111.5°109.5°
CALCAMPBE109.4°109.5°
CAMCALH14109.0°109.5°
CAMCALH15109.0°109.5°
CALCAMH16109.5°109.5°
CALCAMH17109.5°109.5°
CALCAUNBC119.6°120.0°
CALCAUOAB120.1°120.0°
CAUCALH14109.0°109.4°
CAUCALH15109.0°109.5°
CAUNBCCAP128.3°125.6°
NBCCAUOAB120.3°120.0°
NBCCAPH20112.2°110.4°
NBCCAPH21112.2°110.4°
C4C5C6116.8°118.6°
C5C4N3121.9°119.7°
C5C6O6121.8°120.8°
C5C6N1117.7°118.4°
C4N3C2120.2°121.1°
CAMPBEOAG107.6°109.5°
CAMPBEOAD110.3°109.5°
PBECAMH16109.5°109.5°
PBECAMH17109.5°109.4°
OAGPBEOAD111.7°109.5°
PBEOAGH18109.5°114.0°
PBEOADH19109.5°114.0°
O6C6N1120.4°120.8°
C6N1C2123.2°120.3°
C6N1H2118.4°119.8°
N3C2N1120.3°122.0°
N3C2N2117.1°119.0°
N1C2N2122.6°119.0°
C2N1H2118.4°119.9°
C2N2H3120.0°120.0°
C2N2H4120.0°120.0°
H3N2H4120.0°120.0°
H9CANH10109.5°109.4°
H12CAOH13109.5°109.9°
H14CALH15109.5°109.5°
H16CAMH17109.5°109.5°
H20CAPH21109.5°110.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OAJPBFOAICAZ121.6°120.0°
OAJPBFOAIOAE121.6°120.1°
OAJPBFCAZOAF61.3°180.0°
OAJPBFCAZOAE122.7°120.0°
OAJPBFCAZCAN60.7°60.0°
OAJPBFOAIH50.0°60.0°
OAJPBFOAEH60.0°180.0°
OAJPBFCAZH7177.5°60.1°
OAIPBFCAZOAF57.1°60.0°
OAIPBFCAZOAE118.8°120.0°
OAIPBFCAZCAN179.1°180.0°
OAIPBFOAEH6119.3°59.9°
OAIPBFCAZH764.1°59.9°
OAFCAZPBFCAN122.0°120.0°
OAFCAZPBFH7121.2°119.9°
OAFCAZPBFOAE175.9°60.0°
OAFCAZCANH7123.2°120.0°
OAFCAZCANOAT74.4°60.0°
OAFCAZCANH9165.9°60.0°
OAFCAZCANH1045.3°180.0°
PBFCAZCANH7114.4°120.1°
PBFCAZCANOAT163.2°60.0°
CAZPBFOAIH5121.6°180.0°
CAZPBFOAEH6123.5°60.1°
PBFCAZOAFH8180.0°60.0°
PBFCAZCANH943.5°180.0°
PBFCAZCANH1077.1°60.0°
OAEPBFCAZCAN62.0°60.0°
OAEPBFOAIH5121.6°60.1°
OAEPBFCAZH754.8°179.9°
CAZCANOATH9119.7°120.0°
CAZCANOATH10119.7°120.1°
CAZCANOATCBA65.5°180.0°
CANCAZOAFH860.3°60.0°
CAZCANH9H10120.9°120.0°
CANOATCBACAO122.2°91.5°
CANOATCBACBB133.3°155.0°
OATCANCAZH748.8°179.9°
OATCANH9H10120.8°119.9°
CANOATCBAH1111.2°31.6°
OATCBACAOCBB106.0°118.3°
OATCBACAOH11132.1°123.1°
OATCBACBBH11123.1°123.3°
OATCBACAONBC128.5°140.5°
OATCBACBBN969.5°88.1°
OATCBACBBCAP155.4°153.8°
CBAOATCANH954.2°60.0°
CBAOATCANH10174.7°59.9°
OATCBACAOH128.7°21.0°
OATCBACAOH13111.7°100.0°
OATCBACBBH2246.5°35.7°
CAOCBACBBH11124.8°118.4°
CBACAONBCH12119.8°119.5°
CBACAONBCH13119.8°119.4°
CAOCBACBBN9178.4°153.6°
CAOCBACBBCAP43.3°35.5°
CBACAONBCCAU173.1°179.0°
CBACAONBCCAP7.1°1.1°
CBACAOH12H13120.6°121.0°
CAOCBACBBH2265.6°82.6°
CBBCBACAONBC22.6°22.2°
CBACBBN9C86.9°60.0°
CBACBBN9CAP126.8°112.2°
CBACBBN9H22115.1°123.9°
CBACBBCAPH22108.8°118.1°
CBACBBN9C4167.0°120.2°
CBACBBCAPNBC47.7°37.0°
CBBCBACAOH1297.2°97.3°
CBBCBACAOH13142.4°141.7°
CBACBBCAPH2070.4°155.9°
CBACBBCAPH21165.8°81.9°
CAONBCCAPCBB32.6°24.1°
CAONBCCAUCAL0.6°0.0°
CAONBCCAUCAP179.8°179.9°
CAONBCCAUOAB179.9°179.9°
NBCCAOCBAH1199.4°96.3°
NBCCAOH12H13120.6°121.1°
CAONBCCAPH2085.5°143.0°
CAONBCCAPH21150.8°94.8°
OAHPBECAMCAL51.3°55.0°
OAHPBECAMOAG117.8°120.0°
OAHPBECAMOAD120.1°120.0°
OAHPBEOAGOAD121.9°120.0°
OAHPBECAMH1668.7°175.0°
OAHPBECAMH17171.3°65.0°
OAHPBEOAGH180.0°60.0°
OAHPBEOADH190.0°180.0°
N7C8N9H1180.0°179.9°
N7C8N9CBB176.3°180.0°
N7C8N9C41.7°0.2°
C8N7C5C40.1°0.1°
C8N7C5C6179.8°179.9°
N9C8N7C50.9°0.1°
C8N9CBBC4174.0°179.8°
C8N9CBBCAP119.9°52.2°
C8N9C4C51.7°0.2°
C8N9C4N3178.9°180.0°
C8N9CBBH22122.0°176.1°
N7C5C4N91.2°0.2°
N7C5C4C6179.7°180.0°
N7C5C4N3179.4°180.0°
N7C5C6O60.4°0.1°
N7C5C6N1179.5°180.0°
C5N7C8H1179.0°180.0°
N9CBBCAPH22118.9°123.8°
N9CBBCAPNBC180.0°155.1°
CBBN9C4C5177.0°179.9°
CBBN9C4N33.6°0.2°
CBBN9C8H13.7°0.1°
N9CBBCBAH1153.7°35.1°
N9CBBCAPH2061.9°86.0°
N9CBBCAPH2161.9°36.2°
CAPCBBN9C466.1°127.6°
CBBCAPNBCCAU147.6°155.9°
CBBCAPNBCH20118.1°118.8°
CBBCAPNBCH21118.1°118.9°
CAPCBBCBAH1181.4°82.9°
CBBCAPH20H21125.2°122.3°
N9C4C5N3179.4°179.8°
N9C4C5C6179.1°179.8°
N9C4N3C2178.9°179.7°
C4N9C8H1178.3°179.9°
C4N9CBBH2252.0°3.7°
CAMCALCAUH14120.3°120.0°
CAMCALCAUH15120.3°120.0°
CAMCALCAUNBC173.5°180.0°
CALCAMPBEH16120.0°120.0°
CALCAMPBEH17120.0°120.0°
CALCAMPBEOAG169.2°175.0°
CALCAMPBEOAD68.7°65.0°
CAMCALCAUOAB7.2°0.0°
CAMCALH14H15119.1°120.0°
CALCAMH16H17120.0°120.0°
CALCAUNBCOAB179.3°180.0°
CALCAUNBCCAP179.1°180.0°
CAUCALCAMPBE71.6°180.0°
CAUCALH14H15119.1°120.0°
CAUCALCAMH16168.4°60.0°
CAUCALCAMH1748.4°60.0°
CAUNBCCAOH1253.3°59.5°
CAUNBCCAOH1367.1°61.6°
NBCCAUCALH1466.2°60.0°
NBCCAUCALH1553.3°60.0°
CAUNBCCAPH2094.3°37.1°
CAUNBCCAPH2129.4°85.1°
CAPNBCCAUOAB0.1°0.0°
CAPNBCCAOH12126.8°120.6°
CAPNBCCAOH13112.7°118.4°
NBCCAPH20H21125.2°122.3°
NBCCAPCBBH2261.1°81.1°
C4C5C6O6180.0°180.0°
C4C5C6N10.2°0.0°
C5C4N3C20.4°0.0°
C6C5C4N30.3°0.0°
C5C6O6N1179.9°179.9°
C5C6N1C20.0°0.0°
C5C6N1H2180.0°180.0°
C4N3C2N10.2°0.1°
C4N3C2N2179.7°180.0°
CAMPBEOAGOAD121.2°120.0°
PBECAMCALH14168.1°60.0°
PBECAMCALH1548.7°60.0°
PBECAMH16H17120.0°120.0°
CAMPBEOAGH18116.9°180.0°
CAMPBEOADH19118.8°60.0°
OAGPBECAMH1649.2°65.0°
OAGPBECAMH1770.9°55.0°
OAGPBEOADH19121.5°60.0°
OADPBECAMH16171.3°55.0°
OADPBECAMH1751.2°175.0°
OADPBEOAGH18121.9°60.0°
OABCAUCALH14113.1°120.0°
OABCAUCALH15127.5°120.0°
O6C6N1C2179.9°179.9°
O6C6N1H20.1°0.0°
C6N1C2N30.1°0.1°
C6N1C2H2180.0°179.9°
C6N1C2N2179.9°180.0°
N3C2N1N2180.0°179.9°
N3C2N1H2179.9°180.0°
N3C2N2H30.0°180.0°
N3C2N2H4180.0°0.1°
N1C2N2H3179.9°0.1°
N1C2N2H40.0°180.0°
N2C2N1H20.1°0.1°
C2N2H3H4180.0°179.8°
H7CAZOAFH861.9°180.0°
H7CAZCANH970.9°60.0°
H7CAZCANH10168.5°60.0°
H11CBACAOH12140.8°144.2°
H11CBACAOH1320.4°23.1°
H11CBACBBH22169.7°159.0°
H14CALCAMH1648.1°180.0°
H14CALCAMH1771.9°60.0°
H15CALCAMH1671.3°60.0°
H15CALCAMH17168.7°180.0°
H20CAPCBBH22179.3°37.8°
H21CAPCBBH2257.0°160.0°

223790

PDB entries from 2024-08-14

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