YP6
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C16 | C17 | doub | 1.38Å | 1.39Å | Aromatic |
| C16 | C15 | sing | 1.39Å | 1.38Å | Aromatic |
| C17 | C18 | sing | 1.39Å | 1.38Å | Aromatic |
| C21 | S22 | sing | 1.76Å | 1.73Å | Aromatic |
| C21 | C14 | doub | 1.35Å | 1.38Å | Aromatic |
| S22 | C12 | sing | 1.76Å | 1.73Å | Aromatic |
| C14 | C15 | sing | 1.48Å | 1.39Å | |
| C14 | N13 | sing | 1.33Å | 1.32Å | Aromatic |
| C15 | N20 | doub | 1.33Å | 1.32Å | Aromatic |
| C18 | C19 | doub | 1.38Å | 1.38Å | Aromatic |
| C12 | N13 | doub | 1.30Å | 1.32Å | Aromatic |
| C12 | N11 | sing | 1.39Å | 1.46Å | |
| C02 | C01 | doub | 1.38Å | 1.38Å | Aromatic |
| C02 | C03 | sing | 1.39Å | 1.38Å | Aromatic |
| N20 | C19 | sing | 1.32Å | 1.33Å | Aromatic |
| C09 | O08 | sing | 1.43Å | 1.40Å | |
| C09 | C10 | sing | 1.51Å | 1.52Å | |
| O08 | C03 | sing | 1.36Å | 1.40Å | |
| C01 | C06 | sing | 1.38Å | 1.38Å | Aromatic |
| C03 | C04 | doub | 1.39Å | 1.39Å | Aromatic |
| N11 | C10 | sing | 1.35Å | 1.46Å | |
| C10 | O23 | doub | 1.21Å | 1.18Å | |
| C06 | C05 | doub | 1.38Å | 1.38Å | Aromatic |
| C04 | C05 | sing | 1.38Å | 1.39Å | Aromatic |
| C05 | F07 | sing | 1.35Å | 1.36Å | |
| C17 | H1 | sing | 1.08Å | 1.08Å | |
| C21 | H2 | sing | 1.08Å | 1.08Å | |
| C01 | H3 | sing | 1.08Å | 1.08Å | |
| C02 | H4 | sing | 1.08Å | 1.08Å | |
| C04 | H5 | sing | 1.08Å | 1.08Å | |
| C06 | H6 | sing | 1.08Å | 1.08Å | |
| C09 | H7 | sing | 1.09Å | 1.10Å | |
| C09 | H8 | sing | 1.09Å | 1.10Å | |
| N11 | H9 | sing | 0.97Å | 1.00Å | |
| C16 | H10 | sing | 1.08Å | 1.08Å | |
| C18 | H11 | sing | 1.08Å | 1.08Å | |
| C19 | H12 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C17 | C16 | C15 | 119.2° | 119.0° |
| C16 | C17 | C18 | 118.6° | 118.5° |
| C16 | C17 | H1 | 120.7° | 120.8° |
| C17 | C16 | H10 | 120.4° | 120.4° |
| C16 | C15 | C14 | 118.8° | 119.7° |
| C16 | C15 | N20 | 120.9° | 120.6° |
| C15 | C16 | H10 | 120.4° | 120.5° |
| C17 | C18 | C19 | 119.0° | 119.4° |
| C18 | C17 | H1 | 120.7° | 120.7° |
| C17 | C18 | H11 | 120.5° | 120.3° |
| S22 | C21 | C14 | 104.7° | 108.2° |
| C21 | S22 | C12 | 95.6° | 90.0° |
| S22 | C21 | H2 | 127.7° | 125.8° |
| C21 | C14 | C15 | 121.3° | 122.3° |
| C21 | C14 | N13 | 115.9° | 115.3° |
| C14 | C21 | H2 | 127.7° | 125.9° |
| S22 | C12 | N13 | 105.4° | 109.4° |
| S22 | C12 | N11 | 130.4° | 125.3° |
| C15 | C14 | N13 | 122.8° | 122.3° |
| C14 | C15 | N20 | 120.3° | 119.7° |
| C14 | N13 | C12 | 118.4° | 117.0° |
| C15 | N20 | C19 | 121.3° | 121.5° |
| C18 | C19 | N20 | 121.0° | 120.9° |
| C19 | C18 | H11 | 120.5° | 120.3° |
| C18 | C19 | H12 | 119.5° | 119.6° |
| N13 | C12 | N11 | 124.1° | 125.3° |
| C12 | N11 | C10 | 130.4° | 120.0° |
| C12 | N11 | H9 | 114.8° | 120.0° |
| C01 | C02 | C03 | 119.8° | 120.0° |
| C02 | C01 | C06 | 120.9° | 120.1° |
| C02 | C01 | H3 | 119.6° | 120.0° |
| C01 | C02 | H4 | 120.1° | 120.0° |
| C02 | C03 | O08 | 117.9° | 120.1° |
| C02 | C03 | C04 | 119.9° | 119.9° |
| C03 | C02 | H4 | 120.1° | 120.0° |
| N20 | C19 | H12 | 119.5° | 119.5° |
| O08 | C09 | C10 | 106.1° | 109.5° |
| C09 | O08 | C03 | 116.6° | 117.0° |
| O08 | C09 | H7 | 110.3° | 109.5° |
| O08 | C09 | H8 | 110.3° | 109.5° |
| C09 | C10 | N11 | 126.1° | 120.0° |
| C09 | C10 | O23 | 116.5° | 120.0° |
| C10 | C09 | H7 | 110.3° | 109.5° |
| C10 | C09 | H8 | 110.3° | 109.4° |
| O08 | C03 | C04 | 122.3° | 120.0° |
| C01 | C06 | C05 | 119.5° | 120.1° |
| C06 | C01 | H3 | 119.6° | 119.9° |
| C01 | C06 | H6 | 120.2° | 120.0° |
| C03 | C04 | C05 | 119.9° | 119.9° |
| C03 | C04 | H5 | 120.0° | 120.1° |
| N11 | C10 | O23 | 117.5° | 120.0° |
| C10 | N11 | H9 | 114.8° | 120.0° |
| C06 | C05 | C04 | 120.0° | 120.0° |
| C06 | C05 | F07 | 118.6° | 120.0° |
| C05 | C06 | H6 | 120.3° | 119.9° |
| C04 | C05 | F07 | 121.4° | 120.0° |
| C05 | C04 | H5 | 120.0° | 120.0° |
| H7 | C09 | H8 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C17 | C16 | C15 | H10 | 180.0° | 180.0° |
| C16 | C17 | C18 | H1 | 180.0° | 179.8° |
| C17 | C16 | C15 | C14 | 179.6° | 179.7° |
| C17 | C16 | C15 | N20 | 0.6° | 0.0° |
| C16 | C17 | C18 | C19 | 0.2° | 0.2° |
| C16 | C17 | C18 | H11 | 179.9° | 179.8° |
| C15 | C16 | C17 | C18 | 0.4° | 0.0° |
| C16 | C15 | C14 | C21 | 10.0° | 179.8° |
| C16 | C15 | C14 | N20 | 179.8° | 179.7° |
| C16 | C15 | C14 | N13 | 170.4° | 0.3° |
| C16 | C15 | N20 | C19 | 0.4° | 0.4° |
| C15 | C16 | C17 | H1 | 179.6° | 179.8° |
| C17 | C18 | C19 | H11 | 180.0° | 180.0° |
| C17 | C18 | C19 | N20 | 0.0° | 0.6° |
| C18 | C17 | C16 | H10 | 179.6° | 180.0° |
| C17 | C18 | C19 | H12 | 180.0° | 180.0° |
| S22 | C21 | C14 | H2 | 180.0° | 179.8° |
| S22 | C21 | C14 | C15 | 179.8° | 180.0° |
| S22 | C21 | C14 | N13 | 0.2° | 0.0° |
| C21 | S22 | C12 | N13 | 0.0° | 0.0° |
| C21 | S22 | C12 | N11 | 179.7° | 179.9° |
| C14 | C21 | S22 | C12 | 0.1° | 0.0° |
| C21 | C14 | C15 | N13 | 179.6° | 179.9° |
| C21 | C14 | C15 | N20 | 170.2° | 0.1° |
| C21 | C14 | N13 | C12 | 0.2° | 0.0° |
| S22 | C12 | N13 | C14 | 0.1° | 0.0° |
| S22 | C12 | N13 | N11 | 179.7° | 179.9° |
| S22 | C12 | N11 | C10 | 16.1° | 0.1° |
| C12 | S22 | C21 | H2 | 179.9° | 179.7° |
| S22 | C12 | N11 | H9 | 163.8° | 180.0° |
| C15 | C14 | N13 | C12 | 179.8° | 180.0° |
| C14 | C15 | N20 | C19 | 179.8° | 180.0° |
| C15 | C14 | C21 | H2 | 0.3° | 0.2° |
| C14 | C15 | C16 | H10 | 0.4° | 0.3° |
| N13 | C14 | C15 | N20 | 9.4° | 180.0° |
| C14 | N13 | C12 | N11 | 179.7° | 179.9° |
| N13 | C14 | C21 | H2 | 179.8° | 179.7° |
| C15 | N20 | C19 | C18 | 0.1° | 0.6° |
| N20 | C15 | C16 | H10 | 179.5° | 179.9° |
| C15 | N20 | C19 | H12 | 179.9° | 179.9° |
| C18 | C19 | N20 | H12 | 180.0° | 179.4° |
| C19 | C18 | C17 | H1 | 179.9° | 179.9° |
| N13 | C12 | N11 | C10 | 164.2° | 180.0° |
| N13 | C12 | N11 | H9 | 15.9° | 0.1° |
| C12 | N11 | C10 | C09 | 0.7° | 179.8° |
| C12 | N11 | C10 | H9 | 180.0° | 179.9° |
| C12 | N11 | C10 | O23 | 179.7° | 0.1° |
| C01 | C02 | C03 | H4 | 180.0° | 180.0° |
| C01 | C02 | C03 | O08 | 179.7° | 180.0° |
| C02 | C01 | C06 | H3 | 180.0° | 179.7° |
| C01 | C02 | C03 | C04 | 0.4° | 0.0° |
| C02 | C01 | C06 | C05 | 0.2° | 0.0° |
| C02 | C01 | C06 | H6 | 179.7° | 179.7° |
| C02 | C03 | O08 | C09 | 91.7° | 180.0° |
| C02 | C03 | O08 | C04 | 179.3° | 180.0° |
| C03 | C02 | C01 | C06 | 0.4° | 0.0° |
| C02 | C03 | C04 | C05 | 0.4° | 0.0° |
| C03 | C02 | C01 | H3 | 179.6° | 179.7° |
| C02 | C03 | C04 | H5 | 179.7° | 180.0° |
| N20 | C19 | C18 | H11 | 179.9° | 179.4° |
| O08 | C09 | C10 | H7 | 119.5° | 120.0° |
| O08 | C09 | C10 | H8 | 119.4° | 120.0° |
| C09 | O08 | C03 | C04 | 89.1° | 0.0° |
| O08 | C09 | C10 | N11 | 144.9° | 179.7° |
| O08 | C09 | C10 | O23 | 34.7° | 0.0° |
| O08 | C09 | H7 | H8 | 121.6° | 120.0° |
| C10 | C09 | O08 | C03 | 106.3° | 180.0° |
| C09 | C10 | N11 | O23 | 179.6° | 179.7° |
| C10 | C09 | H7 | H8 | 121.6° | 120.0° |
| C09 | C10 | N11 | H9 | 179.3° | 0.4° |
| O08 | C03 | C04 | C05 | 179.6° | 180.0° |
| O08 | C03 | C02 | H4 | 0.3° | 0.0° |
| O08 | C03 | C04 | H5 | 0.4° | 0.0° |
| C03 | O08 | C09 | H7 | 134.3° | 60.0° |
| C03 | O08 | C09 | H8 | 13.2° | 60.1° |
| C01 | C06 | C05 | H6 | 180.0° | 179.8° |
| C01 | C06 | C05 | C04 | 0.2° | 0.1° |
| C01 | C06 | C05 | F07 | 179.9° | 180.0° |
| C06 | C01 | C02 | H4 | 179.6° | 180.0° |
| C03 | C04 | C05 | C06 | 0.2° | 0.1° |
| C03 | C04 | C05 | H5 | 180.0° | 179.9° |
| C03 | C04 | C05 | F07 | 179.8° | 180.0° |
| C04 | C03 | C02 | H4 | 179.6° | 180.0° |
| N11 | C10 | C09 | H7 | 25.4° | 59.7° |
| N11 | C10 | C09 | H8 | 95.7° | 60.3° |
| O23 | C10 | C09 | H7 | 154.2° | 120.0° |
| O23 | C10 | C09 | H8 | 84.7° | 120.0° |
| O23 | C10 | N11 | H9 | 0.4° | 179.9° |
| C06 | C05 | C04 | F07 | 179.9° | 179.9° |
| C05 | C06 | C01 | H3 | 179.8° | 179.8° |
| C06 | C05 | C04 | H5 | 179.8° | 180.0° |
| C04 | C05 | C06 | H6 | 179.8° | 179.7° |
| F07 | C05 | C04 | H5 | 0.1° | 0.1° |
| F07 | C05 | C06 | H6 | 0.1° | 0.2° |
| H1 | C17 | C16 | H10 | 0.4° | 0.2° |
| H1 | C17 | C18 | H11 | 0.1° | 0.1° |
| H3 | C01 | C02 | H4 | 0.4° | 0.3° |
| H3 | C01 | C06 | H6 | 0.3° | 0.0° |
| H11 | C18 | C19 | H12 | 0.1° | 0.0° |






