Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

YP5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.56Å
C2O3sing1.43Å1.44Å
C2C4sing1.54Å1.63Å
C2C28sing1.54Å1.60Å
C4C5sing1.53Å1.59Å
C5C6sing1.53Å1.59Å
C5N8sing1.47Å1.52Å
C5C28sing1.53Å1.60Å
C6C7sing1.54Å1.57Å
C7N8sing1.48Å1.51Å
N8C9sing1.35Å1.38Å
C9O10doub1.22Å1.21Å
C9C11sing1.48Å1.49Å
C11C12doub1.40Å1.37ÅAromatic
C11C16sing1.40Å1.38ÅAromatic
C12N13sing1.32Å1.36ÅAromatic
N13C14doub1.33Å1.42ÅAromatic
C14N15sing1.33Å1.37ÅAromatic
C14N17sing1.38Å1.34Å
N15C16doub1.32Å1.29ÅAromatic
N17C18sing1.46Å1.47Å
C18C19sing1.54Å1.57Å
C18C26sing1.54Å1.51Å
C19C20sing1.51Å1.53Å
C20C21doub1.38Å1.36ÅAromatic
C20C25sing1.38Å1.37ÅAromatic
C21C22sing1.38Å1.42ÅAromatic
C22C23doub1.38Å1.33ÅAromatic
C23C24sing1.38Å1.36ÅAromatic
C23CL27sing1.74Å1.79Å
C24C25doub1.38Å1.40ÅAromatic
C25C26sing1.51Å1.51Å
C16H40sing1.08Å1.08Å
C18H42sing1.09Å1.10Å
C19H44sing1.09Å1.10Å
C19H43sing1.09Å1.10Å
C21H45sing1.08Å1.08Å
C22H46sing1.08Å1.08Å
C24H47sing1.08Å1.08Å
C26H48sing1.09Å1.10Å
C26H49sing1.09Å1.10Å
C28H51sing1.09Å1.10Å
C28H50sing1.09Å1.10Å
C1H31sing1.09Å1.10Å
C1H29sing1.09Å1.10Å
C1H30sing1.09Å1.10Å
O3H32sing0.97Å0.95Å
C4H33sing1.09Å1.10Å
C4H34sing1.09Å1.10Å
C6H36sing1.09Å1.10Å
C6H35sing1.09Å1.10Å
C7H38sing1.09Å1.10Å
C7H37sing1.09Å1.10Å
C12H39sing1.08Å1.08Å
N17H41sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1C2O3108.2°112.8°
C1C2C4118.7°113.6°
C1C2C28117.7°113.6°
C2C1H31109.5°109.5°
C2C1H29109.5°109.4°
C2C1H30109.5°109.5°
O3C2C4111.5°113.7°
O3C2C28113.3°113.6°
C2O3H32109.5°114.0°
C4C2C2886.2°87.3°
C2C4C590.6°86.8°
C2C4H33113.9°113.7°
C2C4H34113.9°113.7°
C2C28C591.5°86.9°
C2C28H51113.7°113.7°
C2C28H50113.8°113.7°
C4C5C6120.3°121.3°
C4C5N8123.7°121.4°
C4C5C2887.6°88.0°
C5C4H33114.0°113.5°
C5C4H34114.0°113.7°
C6C5N886.3°87.3°
C6C5C28125.4°121.4°
C5C6C788.6°85.9°
C5C6H36114.4°113.8°
C5C6H35114.4°113.8°
N8C5C28118.0°121.4°
C5N8C793.5°90.6°
C5N8C9129.2°134.7°
C5C28H51113.8°113.6°
C5C28H50113.8°113.7°
C6C7N887.5°86.4°
C7C6H36114.4°113.8°
C7C6H35114.4°113.8°
C6C7H38114.7°113.7°
C6C7H37114.7°113.7°
C7N8C9135.7°134.7°
N8C7H38114.7°113.8°
N8C7H37114.6°113.7°
N8C9O10120.1°120.0°
N8C9C11125.3°120.0°
O10C9C11114.6°120.0°
C9C11C12119.9°120.9°
C9C11C16122.4°120.9°
C12C11C16117.7°118.3°
C11C12N13123.6°119.0°
C11C12H39118.2°120.5°
C11C16N15123.3°119.0°
C11C16H40118.3°120.5°
C12N13C14113.2°120.9°
N13C12H39118.2°120.5°
N13C14N15124.8°121.9°
N13C14N17116.1°119.1°
N15C14N17119.1°119.1°
C14N15C16117.2°120.9°
C14N17C18122.3°120.0°
C14N17H41106.2°120.0°
N15C16H40118.3°120.5°
N17C18C19113.4°110.8°
N17C18C26111.3°110.8°
N17C18H42109.5°110.9°
C18N17H41106.2°120.0°
C19C18C26105.5°102.4°
C18C19C20100.4°105.2°
C19C18H42108.1°110.8°
C18C19H44111.7°110.3°
C18C19H43111.7°110.3°
C18C26C25100.2°105.1°
C26C18H42108.9°110.8°
C18C26H48111.7°110.4°
C18C26H49111.8°110.3°
C19C20C21129.5°130.4°
C19C20C25109.0°109.7°
C20C19H44111.7°110.4°
C20C19H43111.7°110.3°
C21C20C25121.4°119.9°
C20C21C22119.1°120.2°
C20C21H45120.5°119.9°
C20C25C24120.0°119.9°
C20C25C26112.7°109.8°
C21C22C23117.1°119.9°
C22C21H45120.4°119.9°
C21C22H46121.4°120.0°
C22C23C24126.0°119.9°
C22C23CL27115.9°120.0°
C23C22H46121.5°120.1°
C24C23CL27117.8°120.1°
C23C24C25116.1°120.2°
C23C24H47121.9°119.9°
C24C25C26127.2°130.4°
C25C24H47122.0°119.9°
C25C26H48111.8°110.3°
C25C26H49111.7°110.3°
H44C19H43109.5°110.3°
H48C26H49109.5°110.4°
H51C28H50109.5°112.8°
H31C1H29109.5°109.4°
H31C1H30109.5°109.5°
H29C1H30109.5°109.5°
H33C4H34109.5°113.0°
H36C6H35109.5°113.0°
H38C7H37109.5°113.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1C2O3C4132.3°131.1°
C1C2O3C28132.4°131.0°
C1C2C4C28119.6°114.6°
C1C2C4C5134.8°139.2°
C1C2C28C5135.7°139.3°
C1C2C28H51107.4°106.3°
C1C2C28H5018.9°24.7°
C2C1H31H29120.0°119.9°
C2C1H31H30120.0°120.1°
C2C1H29H30120.0°120.1°
C1C2O3H32178.4°50.3°
C1C2C4H3318.1°24.9°
C1C2C4H34108.5°106.3°
O3C2C4C28113.6°114.7°
O3C2C4C598.4°90.1°
O3C2C28C596.7°90.1°
O3C2C28H5120.2°24.4°
O3C2C28H50146.5°155.4°
O3C2C1H31180.0°69.7°
O3C2C1H2960.0°170.4°
O3C2C1H3060.0°50.3°
O3C2C4H33144.9°155.6°
O3C2C4H3418.3°24.4°
C2C4C5H33116.7°114.5°
C2C4C5H34116.7°114.5°
C2C4C5C6145.4°150.9°
C2C4C5N8107.2°101.3°
C4C2C28C515.1°24.6°
C4C2C28H51132.0°139.1°
C4C2C28H50101.7°89.9°
C4C2C1H3151.7°61.5°
C4C2C1H29171.6°58.4°
C4C2C1H3068.4°178.5°
C4C2O3H3249.3°178.6°
C2C4H33H34128.9°131.5°
C2C28C5C6141.5°150.8°
C2C28C5N8111.8°101.4°
C2C28C5H51116.8°114.5°
C2C28C5H50116.9°114.6°
C2C28H51H50128.5°131.4°
C28C2C1H3150.0°159.2°
C28C2C1H2970.0°39.3°
C28C2C1H30170.0°80.7°
C28C2O3H3246.0°80.7°
C28C2C4H33101.5°89.7°
C28C2C4H34131.9°139.1°
C4C5C6N8127.3°125.5°
C4C5C6C28110.7°108.9°
C4C5N8C28107.2°108.9°
C4C5C6C7142.3°148.6°
C4C5N8C7139.9°149.5°
C4C5N8C953.1°30.5°
C4C5C28H51132.3°139.3°
C4C5C28H50101.4°89.8°
C5C4H33H34128.9°131.3°
C4C5C6H36101.5°97.2°
C4C5C6H3526.0°34.3°
C6C5N8C28128.5°125.6°
C5C6C7H36116.3°114.3°
C5C6C7H35116.3°114.2°
C6C5N8C715.6°24.0°
C6C5N8C9177.5°156.0°
C6C5C28H51101.6°94.6°
C6C5C28H5024.7°36.2°
C6C5C4H3328.7°36.4°
C6C5C4H3497.9°94.6°
C5C6H36H35129.9°131.8°
C5C6C7H38101.0°91.6°
C5C6C7H37131.1°137.2°
C5N8C7C9165.5°180.0°
C5N8C9O106.8°3.0°
C5N8C9C11174.0°176.9°
N8C5C28H515.0°13.2°
N8C5C28H50131.3°144.1°
N8C5C4H33136.1°144.2°
N8C5C4H349.5°13.2°
N8C5C6H36131.2°137.3°
N8C5C6H35101.3°91.3°
C5N8C7H38100.2°90.5°
C5N8C7H37131.9°138.1°
C28C5C6C7107.0°102.5°
C28C5N8C7112.8°101.6°
C28C5N8C954.1°78.4°
C5C28H51H50128.5°131.3°
C28C5C4H33101.5°89.7°
C28C5C4H34131.9°139.3°
C28C5C6H369.2°11.8°
C28C5C6H35136.7°143.2°
C6C7N8H38116.1°114.4°
C6C7N8H37116.0°114.3°
C6C7N8C9178.7°156.2°
C7C6H36H35129.9°131.9°
C6C7H38H37130.5°131.6°
C7N8C9O10167.9°176.9°
C7N8C9C1112.9°3.1°
N8C7C6H36131.4°137.1°
N8C7C6H35101.2°91.4°
N8C7H38H37130.5°131.6°
N8C9O10C11179.3°179.9°
N8C9C11C12154.1°7.6°
N8C9C11C1626.2°172.2°
C9N8C7H3865.2°89.4°
C9N8C7H3762.7°41.9°
O10C9C11C1225.1°172.5°
O10C9C11C16154.5°7.7°
C9C11C12C16179.6°179.8°
C9C11C12N13178.4°179.8°
C9C11C16N15179.1°179.7°
C9C11C16H400.9°0.2°
C9C11C12H391.6°0.2°
C11C12N13H39180.0°180.0°
C11C12N13C142.2°0.0°
C12C11C16N151.3°0.1°
C12C11C16H40178.7°180.0°
C16C11C12N131.2°0.0°
C11C16N15C142.4°0.0°
C11C16N15H40180.0°179.9°
C16C11C12H39178.8°180.0°
C12N13C14N151.1°0.1°
C12N13C14N17180.0°180.0°
N13C14N15N17178.9°179.9°
N13C14N15C161.1°0.1°
N13C14N17C18176.3°179.9°
C14N13C12H39177.8°180.0°
N13C14N17H4161.9°0.0°
N15C14N17C182.7°0.0°
C14N15C16H40177.6°179.9°
N15C14N17H41119.1°179.9°
N17C14N15C16177.8°180.0°
C14N17C18H41121.8°180.0°
C14N17C18C1977.4°155.0°
C14N17C18C26163.8°92.0°
C14N17C18H4243.4°31.5°
N17C18C19C26122.0°118.2°
N17C18C19H42121.6°123.6°
N17C18C26H42120.7°123.6°
N17C18C19C20154.7°144.6°
N17C18C26C25157.2°144.6°
N17C18C19H4436.2°25.6°
N17C18C19H4386.8°96.5°
N17C18C26H4884.3°96.5°
N17C18C26H4938.7°25.7°
C19C18C26H42115.9°118.2°
C18C19C20H44118.5°119.0°
C18C19C20H43118.5°118.9°
C18C19C20C21158.4°162.8°
C18C19C20C2518.3°17.2°
C19C18C26C2533.8°26.3°
C18C19H44H43124.2°122.1°
C19C18C26H48152.3°145.3°
C19C18C26H4984.7°92.5°
C19C18N17H41160.8°25.0°
C26C18C19C2032.6°26.4°
C18C26C25C2023.4°17.2°
C18C26C25C24161.0°162.8°
C18C26C25H48118.5°119.0°
C18C26C25H49118.5°118.9°
C26C18C19H4485.9°92.6°
C26C18C19H43151.1°145.3°
C18C26H48H49124.4°122.2°
C26C18N17H4142.1°88.0°
C19C20C21C25176.3°180.0°
C19C20C21C22178.9°180.0°
C19C20C25C24178.7°180.0°
C19C20C25C262.8°0.0°
C20C19C18H4283.7°91.8°
C20C19H44H43124.3°122.1°
C19C20C21H451.1°0.0°
C20C21C22H45180.0°180.0°
C20C21C22C232.0°0.1°
C21C20C25C244.2°0.0°
C21C20C25C26179.8°180.0°
C21C20C19H4483.1°78.3°
C21C20C19H4339.9°43.9°
C20C21C22H46178.0°180.0°
C25C20C21C222.6°0.0°
C20C25C24C235.1°0.1°
C20C25C24C26175.3°179.9°
C25C20C19H44100.2°101.7°
C25C20C19H43136.8°136.1°
C25C20C21H45177.4°180.0°
C20C25C24H47174.9°179.9°
C20C25C26H48141.8°136.1°
C20C25C26H4995.1°101.7°
C21C22C23H46180.0°179.9°
C21C22C23C243.4°0.0°
C21C22C23CL27177.0°180.0°
C22C23C24CL27173.4°180.0°
C22C23C24C255.0°0.1°
C23C22C21H45178.0°180.0°
C22C23C24H47175.0°179.9°
C23C24C25H47180.0°179.9°
C23C24C25C26179.5°180.0°
C24C23C22H46176.5°180.0°
CL27C23C24C25178.4°179.9°
CL27C23C22H463.0°0.0°
CL27C23C24H471.6°0.1°
C24C25C26H4842.6°43.8°
C24C25C26H4980.5°78.3°
C25C26C18H4282.1°91.9°
C26C25C24H470.5°0.1°
C25C26H48H49124.3°122.1°
H42C18C19H44157.8°149.2°
H42C18C19H4334.8°27.1°
H42C18C26H4836.4°27.1°
H42C18C26H49159.5°149.3°
H42C18N17H4178.3°148.5°
H45C21C22H462.0°0.0°
H31C1H29H30120.0°120.0°
H36C6C7H3815.3°22.7°
H36C6C7H37112.6°108.6°
H35C6C7H38142.8°154.2°
H35C6C7H3714.8°22.9°

254917

PDB entries from 2026-06-10

PDB statisticsPDBj update infoContact PDBjnumon