YP4

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C3	N	sing	1.47Å	1.54Å
C3	C4	sing	1.53Å	1.53Å
N	CA	sing	1.47Å	1.54Å
C5	C4	sing	1.53Å	1.53Å
C5	C6	sing	1.51Å	1.52Å
C11	C6	doub	1.38Å	1.40Å	Aromatic
C11	C10	sing	1.38Å	1.39Å	Aromatic
C1	CA	sing	1.53Å	1.54Å
CA	CB	sing	1.51Å	1.53Å
C6	C7	sing	1.38Å	1.40Å	Aromatic
C10	C9	doub	1.38Å	1.39Å	Aromatic
C14	CB	doub	1.36Å	1.39Å	Aromatic
C14	C15	sing	1.39Å	1.39Å	Aromatic
CB	CG	sing	1.40Å	1.44Å	Aromatic
C7	C8	doub	1.38Å	1.40Å	Aromatic
C15	C16	doub	1.36Å	1.39Å	Aromatic
C9	C8	sing	1.38Å	1.40Å	Aromatic
C8	C12	sing	1.51Å	1.53Å
CG	CD2	doub	1.40Å	1.42Å	Aromatic
CG	CD1	sing	1.42Å	1.43Å	Aromatic
CD2	CE2	sing	1.36Å	1.39Å	Aromatic
C16	CD1	sing	1.41Å	1.41Å	Aromatic
CD1	CE1	doub	1.40Å	1.41Å	Aromatic
F2	C12	sing	1.40Å	1.33Å
C12	F3	sing	1.40Å	1.33Å
C12	F1	sing	1.40Å	1.34Å
CE2	CZ	doub	1.39Å	1.38Å	Aromatic
CE1	CZ	sing	1.36Å	1.39Å	Aromatic
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
C3	H4	sing	1.09Å	1.10Å
C3	H5	sing	1.09Å	1.10Å
C4	H6	sing	1.09Å	1.10Å
C4	H7	sing	1.09Å	1.10Å
C5	H8	sing	1.09Å	1.10Å
C5	H9	sing	1.09Å	1.10Å
N	H10	sing	1.01Å	1.00Å
CA	H12	sing	1.09Å	1.10Å
CD2	H13	sing	1.08Å	1.08Å
CE1	H14	sing	1.08Å	1.08Å
CE2	H15	sing	1.08Å	1.08Å
CZ	H16	sing	1.08Å	1.08Å
C7	H17	sing	1.08Å	1.08Å
C9	H18	sing	1.08Å	1.08Å
C10	H19	sing	1.08Å	1.08Å
C11	H20	sing	1.08Å	1.08Å
C14	H21	sing	1.08Å	1.08Å
C15	H22	sing	1.08Å	1.08Å
C16	H23	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N	C3	C4	110.9°	109.5°
C3	N	CA	117.7°	111.0°
N	C3	H4	109.1°	109.4°
N	C3	H5	109.1°	109.5°
C3	N	H10	107.4°	111.0°
C3	C4	C5	113.3°	109.5°
C4	C3	H4	109.1°	109.5°
C4	C3	H5	109.1°	109.5°
C3	C4	H6	108.5°	109.4°
C3	C4	H7	108.5°	109.5°
N	CA	C1	107.8°	109.5°
N	CA	CB	113.5°	109.5°
CA	N	H10	107.4°	111.0°
N	CA	H12	107.4°	109.5°
C4	C5	C6	111.1°	109.5°
C5	C4	H6	108.5°	109.4°
C5	C4	H7	108.5°	109.5°
C4	C5	H8	109.1°	109.4°
C4	C5	H9	109.0°	109.5°
C5	C6	C11	120.3°	120.0°
C5	C6	C7	119.8°	120.0°
C6	C5	H8	109.0°	109.5°
C6	C5	H9	109.1°	109.5°
C6	C11	C10	119.9°	120.0°
C11	C6	C7	119.9°	120.0°
C6	C11	H20	120.0°	120.0°
C11	C10	C9	119.9°	120.0°
C11	C10	H19	120.1°	120.0°
C10	C11	H20	120.0°	120.0°
C1	CA	CB	113.0°	109.4°
CA	C1	H1	109.5°	109.5°
CA	C1	H2	109.5°	109.5°
CA	C1	H3	109.5°	109.5°
C1	CA	H12	107.4°	109.5°
CA	CB	C14	118.3°	120.1°
CA	CB	CG	122.5°	120.1°
CB	CA	H12	107.4°	109.5°
C6	C7	C8	120.6°	120.0°
C6	C7	H17	119.7°	120.0°
C10	C9	C8	120.9°	120.0°
C10	C9	H18	119.6°	120.1°
C9	C10	H19	120.1°	120.0°
CB	C14	C15	121.7°	120.9°
C14	CB	CG	119.2°	119.7°
CB	C14	H21	119.2°	119.5°
C14	C15	C16	120.5°	121.0°
C15	C14	H21	119.1°	119.6°
C14	C15	H22	119.7°	119.4°
CB	CG	CD2	124.3°	121.3°
CB	CG	CD1	118.5°	119.3°
C7	C8	C9	118.8°	120.0°
C7	C8	C12	120.1°	120.0°
C8	C7	H17	119.7°	120.0°
C15	C16	CD1	120.3°	119.7°
C16	C15	H22	119.8°	119.5°
C15	C16	H23	119.8°	120.2°
C9	C8	C12	121.1°	120.0°
C8	C9	H18	119.6°	119.9°
C8	C12	F2	109.5°	109.5°
C8	C12	F3	110.1°	109.5°
C8	C12	F1	112.2°	109.5°
CD2	CG	CD1	117.2°	119.3°
CG	CD2	CE2	121.4°	119.7°
CG	CD2	H13	119.3°	120.2°
CG	CD1	C16	119.8°	119.3°
CG	CD1	CE1	119.8°	119.4°
CD2	CE2	CZ	120.7°	121.0°
CE2	CD2	H13	119.3°	120.2°
CD2	CE2	H15	119.6°	119.5°
C16	CD1	CE1	120.3°	121.3°
CD1	C16	H23	119.9°	120.2°
CD1	CE1	CZ	120.7°	119.7°
CD1	CE1	H14	119.6°	120.2°
F2	C12	F3	108.8°	109.5°
F2	C12	F1	108.1°	109.5°
F3	C12	F1	108.1°	109.4°
CE2	CZ	CE1	120.1°	121.0°
CZ	CE2	H15	119.7°	119.5°
CE2	CZ	H16	120.0°	119.5°
CZ	CE1	H14	119.6°	120.2°
CE1	CZ	H16	120.0°	119.5°
H1	C1	H2	109.5°	109.5°
H1	C1	H3	109.5°	109.5°
H2	C1	H3	109.5°	109.4°
H4	C3	H5	109.5°	109.4°
H6	C4	H7	109.5°	109.5°
H8	C5	H9	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N	C3	C4	H4	120.2°	120.0°
N	C3	C4	H5	120.2°	120.0°
C3	N	CA	H10	121.2°	124.0°
N	C3	C4	C5	177.0°	180.0°
C3	N	CA	C1	173.6°	85.0°
C3	N	CA	CB	60.5°	155.0°
N	C3	H4	H5	119.3°	120.0°
N	C3	C4	H6	62.4°	60.0°
N	C3	C4	H7	56.5°	60.0°
C3	N	CA	H12	58.1°	35.0°
C4	C3	N	CA	56.8°	180.0°
C3	C4	C5	H6	120.6°	120.0°
C3	C4	C5	H7	120.6°	120.0°
C3	C4	C5	C6	160.1°	180.0°
C4	C3	H4	H5	119.3°	120.0°
C3	C4	H6	H7	118.3°	120.0°
C3	C4	C5	H8	79.7°	60.0°
C3	C4	C5	H9	39.8°	59.9°
C4	C3	N	H10	178.0°	56.0°
N	CA	C1	CB	126.3°	120.0°
N	CA	C1	H12	115.4°	120.0°
N	CA	CB	H12	118.5°	120.0°
N	CA	CB	C14	62.9°	24.7°
N	CA	CB	CG	119.0°	155.0°
N	CA	C1	H1	180.0°	60.0°
N	CA	C1	H2	60.0°	60.0°
N	CA	C1	H3	60.0°	180.0°
CA	N	C3	H4	177.0°	60.0°
CA	N	C3	H5	63.4°	59.9°
C4	C5	C6	H8	120.3°	119.9°
C4	C5	C6	H9	120.2°	120.0°
C4	C5	C6	C11	87.1°	90.3°
C4	C5	C6	C7	91.6°	90.0°
C5	C4	C3	H4	56.8°	60.0°
C5	C4	C3	H5	62.8°	60.0°
C5	C4	H6	H7	118.3°	120.0°
C4	C5	H8	H9	119.2°	120.0°
C5	C6	C11	C7	178.7°	179.7°
C5	C6	C11	C10	179.9°	179.7°
C5	C6	C7	C8	179.1°	180.0°
C6	C5	C4	H6	39.5°	60.0°
C6	C5	C4	H7	79.4°	60.0°
C6	C5	H8	H9	119.3°	120.1°
C5	C6	C7	H17	0.8°	0.0°
C5	C6	C11	H20	0.1°	0.0°
C6	C11	C10	H20	180.0°	179.7°
C6	C11	C10	C9	0.6°	0.5°
C11	C6	C7	C8	2.1°	0.3°
C11	C6	C5	H8	33.1°	149.7°
C11	C6	C5	H9	152.6°	29.7°
C11	C6	C7	H17	177.9°	179.7°
C6	C11	C10	H19	179.4°	179.7°
C10	C11	C6	C7	1.4°	0.6°
C11	C10	C9	H19	180.0°	179.8°
C11	C10	C9	C8	1.9°	0.3°
C11	C10	C9	H18	178.1°	179.7°
C1	CA	CB	H12	118.3°	120.0°
C1	CA	CB	C14	60.3°	95.3°
C1	CA	CB	CG	117.8°	85.0°
CA	C1	H1	H2	120.0°	120.0°
CA	C1	H1	H3	120.0°	120.0°
CA	C1	H2	H3	120.0°	120.0°
C1	CA	N	H10	65.3°	151.0°
CA	CB	C14	CG	178.2°	179.7°
CA	CB	C14	C15	176.9°	180.0°
CA	CB	CG	CD2	2.7°	0.0°
CA	CB	CG	CD1	176.4°	180.0°
CB	CA	C1	H1	53.7°	60.0°
CB	CA	C1	H2	66.3°	180.0°
CB	CA	C1	H3	173.7°	60.0°
CB	CA	N	H10	60.7°	31.0°
CA	CB	C14	H21	3.1°	0.0°
C6	C7	C8	H17	180.0°	179.9°
C6	C7	C8	C9	0.8°	0.1°
C6	C7	C8	C12	178.7°	180.0°
C7	C6	C5	H8	148.1°	29.9°
C7	C6	C5	H9	28.6°	150.0°
C7	C6	C11	H20	178.6°	179.7°
C10	C9	C8	C7	1.2°	0.1°
C10	C9	C8	H18	180.0°	180.0°
C10	C9	C8	C12	179.3°	180.0°
C9	C10	C11	H20	179.4°	179.7°
CB	C14	C15	H21	180.0°	180.0°
CB	C14	C15	C16	0.1°	0.0°
C14	CB	CG	CD2	179.1°	179.7°
C14	CB	CG	CD1	1.7°	0.3°
C14	CB	CA	H12	178.6°	144.7°
CB	C14	C15	H22	179.9°	180.0°
C15	C14	CB	CG	1.3°	0.3°
C14	C15	C16	H22	180.0°	180.0°
C14	C15	C16	CD1	1.0°	0.3°
C14	C15	C16	H23	179.0°	180.0°
CB	CG	CD2	CD1	179.2°	180.0°
CB	CG	CD2	CE2	179.5°	180.0°
CB	CG	CD1	C16	0.8°	0.0°
CB	CG	CD1	CE1	179.0°	180.0°
CG	CB	CA	H12	0.4°	35.0°
CB	CG	CD2	H13	0.5°	0.1°
CG	CB	C14	H21	178.7°	179.7°
C7	C8	C9	C12	179.5°	180.0°
C7	C8	C12	F2	63.4°	30.0°
C7	C8	C12	F3	56.2°	90.0°
C7	C8	C12	F1	176.6°	150.1°
C7	C8	C9	H18	178.8°	180.0°
C15	C16	CD1	CG	0.5°	0.2°
C15	C16	CD1	H23	180.0°	179.8°
C15	C16	CD1	CE1	179.7°	179.7°
C16	C15	C14	H21	179.9°	180.0°
C9	C8	C12	F2	116.1°	150.0°
C9	C8	C12	F3	124.3°	90.0°
C9	C8	C12	F1	3.9°	30.0°
C9	C8	C7	H17	179.2°	180.0°
C8	C9	C10	H19	178.1°	179.9°
C8	C12	F2	F3	120.4°	120.0°
C8	C12	F2	F1	122.5°	120.0°
C8	C12	F3	F1	122.8°	120.0°
C12	C8	C7	H17	1.3°	0.0°
C12	C8	C9	H18	0.7°	0.0°
CG	CD2	CE2	H13	180.0°	180.0°
CD2	CG	CD1	C16	179.9°	179.9°
CD2	CG	CD1	CE1	0.2°	0.0°
CG	CD2	CE2	CZ	1.4°	0.1°
CG	CD2	CE2	H15	178.6°	180.0°
CD1	CG	CD2	CE2	1.3°	0.0°
CG	CD1	C16	CE1	179.8°	180.0°
CG	CD1	CE1	CZ	1.7°	0.0°
CD1	CG	CD2	H13	178.7°	179.9°
CG	CD1	CE1	H14	178.3°	180.0°
CG	CD1	C16	H23	179.5°	180.0°
CD2	CE2	CZ	H15	180.0°	179.9°
CD2	CE2	CZ	CE1	0.1°	0.1°
CD2	CE2	CZ	H16	179.9°	180.0°
C16	CD1	CE1	CZ	178.5°	180.0°
C16	CD1	CE1	H14	1.5°	0.0°
CD1	C16	C15	H22	179.0°	179.7°
CD1	CE1	CZ	CE2	1.6°	0.1°
CD1	CE1	CZ	H14	180.0°	180.0°
CD1	CE1	CZ	H16	178.4°	180.0°
CE1	CD1	C16	H23	0.4°	0.1°
F2	C12	F3	F1	117.1°	120.0°
CE2	CZ	CE1	H16	180.0°	179.9°
CZ	CE2	CD2	H13	178.6°	179.9°
CE2	CZ	CE1	H14	178.4°	179.9°
CE1	CZ	CE2	H15	179.9°	180.0°
H1	C1	H2	H3	120.0°	120.0°
H1	C1	CA	H12	64.6°	179.9°
H2	C1	CA	H12	175.4°	60.0°
H3	C1	CA	H12	55.4°	59.9°
H4	C3	C4	H6	177.4°	60.0°
H4	C3	C4	H7	63.7°	180.0°
H4	C3	N	H10	61.8°	176.0°
H5	C3	C4	H6	57.8°	180.0°
H5	C3	C4	H7	176.7°	60.1°
H5	C3	N	H10	57.8°	64.0°
H6	C4	C5	H8	159.8°	180.0°
H6	C4	C5	H9	80.7°	60.0°
H7	C4	C5	H8	40.9°	60.0°
H7	C4	C5	H9	160.4°	180.0°
H10	N	CA	H12	179.3°	89.0°
H13	CD2	CE2	H15	1.4°	0.0°
H14	CE1	CZ	H16	1.6°	0.0°
H15	CE2	CZ	H16	0.1°	0.1°
H18	C9	C10	H19	1.9°	0.0°
H19	C10	C11	H20	0.6°	0.0°
H21	C14	C15	H22	0.1°	0.0°
H22	C15	C16	H23	1.0°	0.1°

Release date:	2021-06-30
Definition date:	2021-03-18
Last modified:	2021-06-25
Release status:	REL
Processing site:	RCSB
Derived from:	7M3F