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SummaryGeometryRelated PDB entries

YP0

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C03doub1.37Å1.45ÅAromatic
C02C04doub1.39Å1.40ÅAromatic
C03C04sing1.40Å1.40ÅAromatic
C02C05sing1.39Å1.45ÅAromatic
C01C06sing1.41Å1.40ÅAromatic
C05C06doub1.40Å1.43ÅAromatic
C06N07sing1.36Å1.47Å
N07C08doub1.28Å1.47Å
C08C09sing1.51Å1.45Å
C09C10sing1.51Å1.48Å
C05N11sing1.39Å1.50Å
C10N11sing1.33Å1.47Å
C08C12sing1.47Å1.53Å
C10O13doub1.21Å1.23Å
C12C14doub1.40Å1.41ÅAromatic
C15C16sing1.40Å1.41ÅAromatic
C14C17sing1.38Å1.42ÅAromatic
C15C17doub1.38Å1.39ÅAromatic
C12C18sing1.40Å1.38ÅAromatic
C16C18doub1.39Å1.41ÅAromatic
C16C19sing1.48Å1.51Å
C19O20sing1.35Å1.37ÅAromatic
O20C21sing1.34Å1.37ÅAromatic
C21N22doub1.30Å1.35ÅAromatic
C19N23doub1.31Å1.35ÅAromatic
N22N23sing1.29Å1.39ÅAromatic
C21C24sing1.51Å1.53Å
C04C25sing1.48Å1.44Å
C25C26doub1.40Å1.40ÅAromatic
C27C28sing1.38Å1.39ÅAromatic
C26C29sing1.38Å1.39ÅAromatic
C27C29doub1.38Å1.39ÅAromatic
C25C30sing1.39Å1.39ÅAromatic
C28C30doub1.38Å1.40ÅAromatic
C26F31sing1.35Å1.33Å
C01H32sing1.08Å1.08Å
C02H33sing1.08Å1.08Å
C15H39sing1.08Å1.08Å
C17H40sing1.08Å1.08Å
C18H41sing1.08Å1.08Å
C24H42sing1.09Å1.10Å
C24H43sing1.09Å1.10Å
C24H44sing1.09Å1.10Å
C27H45sing1.08Å1.08Å
C28H46sing1.08Å1.08Å
C03H34sing1.08Å1.08Å
C09H35sing1.09Å1.10Å
C09H36sing1.09Å1.10Å
N11H37sing0.97Å1.00Å
C14H38sing1.08Å1.08Å
C29H47sing1.08Å1.08Å
C30H48sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01C03C04121.1°119.9°
C03C01C06120.5°120.8°
C03C01H32119.7°119.6°
C01C03H34119.5°120.0°
C02C04C03118.4°119.8°
C04C02C05121.3°120.7°
C02C04C25120.9°120.1°
C04C02H33119.4°119.6°
C03C04C25120.5°120.1°
C04C03H34119.5°120.1°
C02C05C06120.1°119.4°
C02C05N11121.7°116.9°
C05C02H33119.4°119.7°
C01C06C05118.6°119.4°
C01C06N07125.3°116.8°
C06C01H32119.7°119.6°
C05C06N07116.1°123.8°
C06C05N11118.2°123.7°
C06N07C08132.4°126.4°
N07C08C09118.7°121.7°
N07C08C12118.9°119.2°
C08C09C10100.9°108.1°
C09C08C12122.2°119.1°
C08C09H35111.6°109.7°
C08C09H36111.5°109.7°
C09C10N11116.7°120.7°
C09C10O13122.0°119.6°
C10C09H35111.6°109.8°
C10C09H36111.6°109.7°
C05N11C10132.3°125.1°
C05N11H37113.8°117.5°
N11C10O13121.3°119.7°
C10N11H37113.9°117.4°
C08C12C14124.4°120.1°
C08C12C18116.5°120.1°
C12C14C17119.7°120.1°
C14C12C18118.9°119.8°
C12C14H38120.2°119.9°
C16C15C17119.1°120.2°
C15C16C18120.0°119.9°
C15C16C19125.7°120.0°
C16C15H39120.5°119.9°
C14C17C15120.8°120.3°
C14C17H40119.6°119.9°
C17C14H38120.1°119.9°
C17C15H39120.5°119.9°
C15C17H40119.6°119.8°
C12C18C16121.5°119.7°
C12C18H41119.3°120.2°
C18C16C19114.3°120.1°
C16C18H41119.2°120.1°
C16C19O20123.6°126.4°
C16C19N23128.7°126.3°
C19O20C21109.3°106.3°
O20C19N23107.6°107.3°
O20C21N22106.5°107.7°
O20C21C24125.9°126.2°
C21N22N23109.2°109.5°
N22C21C24127.6°126.2°
C19N23N22107.5°109.2°
C21C24H42109.5°109.5°
C21C24H43109.4°109.4°
C21C24H44109.5°109.4°
C04C25C26122.6°120.1°
C04C25C30118.8°120.1°
C25C26C29121.3°119.8°
C26C25C30118.5°119.7°
C25C26F31120.2°120.1°
C28C27C29119.3°120.3°
C27C28C30120.6°120.2°
C28C27H45120.4°119.9°
C27C28H46119.7°119.9°
C26C29C27119.8°120.1°
C29C26F31118.4°120.1°
C26C29H47120.1°120.0°
C29C27H45120.3°119.8°
C27C29H47120.1°119.9°
C25C30C28120.4°119.9°
C25C30H48119.8°120.1°
C30C28H46119.7°119.9°
C28C30H48119.8°120.0°
H42C24H43109.4°109.5°
H42C24H44109.5°109.5°
H43C24H44109.5°109.5°
H35C09H36109.5°109.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01C03C04C023.4°0.1°
C01C03C04H34180.0°180.0°
C03C01C06H32180.0°179.7°
C03C01C06C051.7°0.3°
C03C01C06N07178.9°179.5°
C01C03C04C25178.1°179.8°
C02C04C03C25174.7°179.9°
C04C02C05H33180.0°179.9°
C04C02C05C062.0°0.3°
C04C02C05N11176.7°179.6°
C02C04C25C26135.5°130.0°
C02C04C25C3047.9°50.3°
C02C04C03H34176.6°179.9°
C03C04C02C053.0°0.1°
C04C03C01C062.8°0.0°
C03C04C25C2650.0°49.9°
C03C04C25C30126.7°129.8°
C04C03C01H32177.2°179.8°
C03C04C02H33177.0°180.0°
C02C05C06C011.3°0.4°
C02C05C06N11178.7°179.9°
C02C05C06N07178.8°179.3°
C02C05N11C10139.7°139.3°
C05C02C04C25177.7°180.0°
C02C05N11H3740.3°40.8°
C01C06C05N07177.5°179.7°
C01C06N07C08140.0°138.4°
C01C06C05N11177.4°179.5°
C06C01C03H34177.2°180.0°
C05C06N07C0842.7°41.9°
C06C05N11C1041.7°40.6°
C05C06C01H32178.3°180.0°
C06C05C02H33178.0°179.7°
C06C05N11H37138.3°139.3°
C06N07C08C090.5°1.7°
N07C06C05N110.1°0.8°
C06N07C08C12176.1°178.3°
N07C06C01H321.1°0.2°
N07C08C09C12175.5°180.0°
N07C08C09C1071.8°62.8°
N07C08C12C14167.6°7.1°
N07C08C12C188.0°172.8°
N07C08C09H3546.8°177.5°
N07C08C09H36169.6°56.8°
C08C09C10H35118.6°119.7°
C08C09C10H36118.6°119.6°
C08C09C10N1171.2°61.0°
C08C09C10O13108.3°119.1°
C09C08C12C147.9°172.9°
C09C08C12C18176.5°7.2°
C08C09H35H36124.0°120.6°
C09C10N11C051.4°2.5°
C09C10N11O13179.5°179.9°
C10C09C08C12103.7°117.2°
C10C09H35H36124.0°120.7°
C09C10N11H37178.6°177.4°
C05N11C10H37180.0°179.9°
C05N11C10O13178.2°177.4°
N11C05C02H333.3°0.3°
N11C10C09H3547.4°179.3°
N11C10C09H36170.2°58.7°
C08C12C14C18175.5°179.9°
C08C12C14C17177.7°180.0°
C08C12C18C16178.1°180.0°
C08C12C18H411.9°0.2°
C12C08C09H35137.7°2.6°
C12C08C09H3614.8°123.2°
C08C12C14H382.3°0.1°
O13C10C09H35133.1°0.6°
O13C10C09H3610.3°121.3°
O13C10N11H371.8°2.7°
C12C14C17H38180.0°180.0°
C12C14C17C151.1°0.0°
C14C12C18C162.2°0.1°
C12C14C17H40178.9°180.0°
C14C12C18H41177.8°180.0°
C16C15C17C140.0°0.0°
C16C15C17H39180.0°179.7°
C15C16C18C121.0°0.0°
C15C16C18C19179.7°179.9°
C15C16C19O20126.0°0.1°
C15C16C19N2356.9°179.7°
C16C15C17H40180.0°180.0°
C15C16C18H41179.0°179.9°
C14C17C15H40180.0°180.0°
C17C14C12C182.2°0.1°
C14C17C15H39180.0°179.7°
C17C15C16C180.1°0.0°
C17C15C16C19179.5°180.0°
C15C17C14H38178.9°180.0°
C12C18C16H41180.0°179.9°
C12C18C16C19179.3°179.9°
C18C12C14H38177.8°180.0°
C18C16C19O2053.6°180.0°
C18C16C19N23123.4°0.4°
C18C16C15H39179.9°179.7°
C16C19O20N23177.6°179.7°
C16C19O20C21178.2°179.9°
C16C19N23N22177.9°179.9°
C19C16C15H390.4°0.4°
C19C16C18H410.7°0.0°
C19O20C21N220.5°0.2°
O20C19N23N220.5°0.3°
C19O20C21C24179.2°179.8°
O20C21N22C24179.7°180.0°
C21O20C19N230.6°0.3°
O20C21N22N230.1°0.0°
O20C21C24H420.0°90.0°
O20C21C24H43120.0°30.0°
O20C21C24H44120.0°150.0°
C21N22N23C190.3°0.2°
N22C21C24H42179.6°90.0°
N22C21C24H4359.6°150.0°
N22C21C24H4460.4°30.1°
N23N22C21C24179.6°180.0°
C21C24H42H43120.0°119.9°
C21C24H42H44120.0°120.0°
C21C24H43H44120.0°119.9°
C04C25C26C30176.7°179.7°
C04C25C26C29178.3°180.0°
C04C25C30C28177.1°180.0°
C04C25C26F314.0°0.0°
C25C04C02H332.3°0.1°
C25C04C03H341.9°0.2°
C04C25C30H482.9°0.1°
C25C26C29F31177.7°180.0°
C25C26C29C271.6°0.0°
C26C25C30C280.3°0.3°
C25C26C29H47178.4°180.0°
C26C25C30H48179.7°179.7°
C28C27C29C260.1°0.3°
C28C27C29H45180.0°179.8°
C27C28C30C251.1°0.0°
C27C28C30H46180.0°179.8°
C28C27C29H47179.9°179.8°
C27C28C30H48178.9°179.9°
C26C29C27H47180.0°180.0°
C29C26C25C301.7°0.3°
C26C29C27H45179.9°180.0°
C29C27C28C301.2°0.2°
C27C29C26F31179.3°180.0°
C29C27C28H46178.8°180.0°
C25C30C28H48180.0°180.0°
C30C25C26F31179.3°179.8°
C25C30C28H46178.9°179.8°
C30C28C27H45178.8°180.0°
F31C26C29H470.7°0.0°
H32C01C03H342.8°0.3°
H39C15C17H400.0°0.3°
H40C17C14H381.1°0.0°
H42C24H43H44120.0°120.1°
H45C27C28H461.2°0.2°
H45C27C29H470.1°0.0°
H46C28C30H481.1°0.3°

246905

PDB entries from 2025-12-31

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