Loading
PDBj
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

YOK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1ACGAsing1.33Å1.30Å
O1AH1Asing0.88Å0.95Å
CGAO2Adoub1.22Å1.24Å
CGACBAsing1.50Å1.42Å
CBACAAsing1.52Å1.56Å
CBAHBA1sing0.97Å1.10Å
CBAHBA2sing0.97Å1.10Å
CAACC5sing1.51Å1.51Å
CAAHAA1sing0.98Å1.10Å
CAAHAA2sing0.98Å1.10Å
CC5CC4doub1.40Å1.43ÅAromatic
CC5CC6sing1.39Å1.40ÅAromatic
CC4CC3sing1.38Å1.41ÅAromatic
CC4HC4sing0.94Å1.08Å
CC3CC2doub1.39Å1.41ÅAromatic
CC3HC3sing0.95Å1.08Å
CC2NBsing1.41Å1.41Å
CC2CC1sing1.40Å1.41ÅAromatic
NBFEsing2.44Å2.18Å
NBCBdoub1.26Å1.29Å
FEOBsing1.82Å1.96Å
FEOAsing1.83Å1.91Å
FENAsing2.50Å2.13Å
OBCB2sing1.26Å1.35Å
CB2CB1sing1.40Å1.45ÅAromatic
CB2CB3doub1.42Å1.41ÅAromatic
CB1CB6doub1.41Å1.40ÅAromatic
CB1CBsing1.44Å1.42Å
CB6CB5sing1.38Å1.39ÅAromatic
CB6HB6sing0.94Å1.08Å
CB5CB4doub1.38Å1.40ÅAromatic
CB5HB5sing0.94Å1.08Å
CB4CB3sing1.39Å1.41ÅAromatic
CB4HB4sing0.94Å1.08Å
CB3HB3sing0.94Å1.08Å
CBHBsing0.94Å1.08Å
OACA2sing1.26Å1.36Å
CA2CA3doub1.42Å1.43ÅAromatic
CA2CA1sing1.39Å1.45ÅAromatic
CA3CA4sing1.39Å1.42ÅAromatic
CA3HA3sing0.94Å1.08Å
CA4CA5doub1.38Å1.42ÅAromatic
CA4HA4sing0.94Å1.08Å
CA5CA6sing1.38Å1.43ÅAromatic
CA5HA5sing0.94Å1.08Å
CA6CA1doub1.40Å1.43ÅAromatic
CA6HA6sing0.94Å1.08Å
CA1CAsing1.44Å1.43Å
CANAdoub1.26Å1.31Å
CAHAsing0.94Å1.08Å
NACC1sing1.41Å1.42Å
CC1CC6doub1.39Å1.41ÅAromatic
CC6HC6sing0.94Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CGAO1AH1A109.5°117.4°
O1ACGAO2A118.3°122.1°
O1ACGACBA118.4°115.2°
O2ACGACBA123.3°122.6°
CGACBACAA111.7°114.4°
CGACBAHBA1108.3°108.8°
CGACBAHBA2108.8°108.2°
CAACBAHBA1108.3°109.1°
CAACBAHBA2108.7°108.9°
CBACAACC5109.0°113.9°
CBACAAHAA1109.7°108.9°
CBACAAHAA2109.6°108.8°
HBA1CBAHBA2111.2°107.1°
CC5CAAHAA1109.8°109.0°
CC5CAAHAA2109.6°109.0°
CAACC5CC4117.2°121.2°
CAACC5CC6119.4°120.9°
HAA1CAAHAA2109.1°107.1°
CC4CC5CC6123.4°118.0°
CC5CC4CC3118.7°121.7°
CC5CC4HC4120.7°119.1°
CC5CC6CC1117.4°120.9°
CC5CC6HC6121.3°119.9°
CC3CC4HC4120.7°119.1°
CC4CC3CC2118.2°119.5°
CC4CC3HC3120.9°120.5°
CC2CC3HC3120.9°119.6°
CC3CC2NB119.7°131.8°
CC3CC2CC1122.4°119.2°
NBCC2CC1117.9°108.0°
CC2NBFE109.3°120.2°
CC2NBCB127.6°135.6°
CC2CC1NA111.1°110.0°
CC2CC1CC6120.0°120.1°
FENBCB123.1°79.3°
NBFEOB86.5°101.7°
NBFEOA113.1°147.4°
NBFENA73.6°56.0°
NBCBCB1129.1°120.0°
NBCBHB115.4°120.3°
OBFEOA95.5°108.8°
OBFENA156.2°157.5°
FEOBCB2132.6°105.1°
OAFENA80.9°92.6°
FEOACA2131.3°111.8°
FENACA125.4°85.4°
FENACC1113.9°115.2°
OBCB2CB1121.7°117.4°
OBCB2CB3117.1°124.5°
CB1CB2CB3121.2°117.0°
CB2CB1CB6118.5°120.7°
CB2CB1CB123.1°116.2°
CB2CB3CB4117.8°121.0°
CB2CB3HB3121.1°119.1°
CB6CB1CB118.3°122.2°
CB1CB6CB5120.3°120.2°
CB1CB6HB6119.8°119.6°
CB1CBHB115.4°119.7°
CB5CB6HB6119.9°120.1°
CB6CB5CB4121.0°119.7°
CB6CB5HB5119.5°120.1°
CB4CB5HB5119.5°120.2°
CB5CB4CB3121.2°120.7°
CB5CB4HB4119.4°119.9°
CB3CB4HB4119.4°119.4°
CB4CB3HB3121.1°119.9°
OACA2CA3119.6°126.6°
OACA2CA1118.0°115.3°
CA3CA2CA1122.3°116.9°
CA2CA3CA4117.6°120.8°
CA2CA3HA3121.2°119.1°
CA2CA1CA6117.8°121.2°
CA2CA1CA120.7°114.6°
CA4CA3HA3121.2°120.0°
CA3CA4CA5121.8°120.8°
CA3CA4HA4119.1°119.3°
CA5CA4HA4119.1°119.8°
CA4CA5CA6119.8°119.6°
CA4CA5HA5120.1°120.2°
CA6CA5HA5120.1°120.2°
CA5CA6CA1120.6°119.9°
CA5CA6HA6119.7°120.1°
CA1CA6HA6119.7°119.9°
CA6CA1CA121.5°123.1°
CA1CANA125.6°119.2°
CA1CAHA117.2°120.1°
NACAHA117.2°120.7°
CANACC1120.7°138.2°
NACC1CC6128.9°129.8°
CC1CC6HC6121.3°119.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1ACGAO2ACBA179.8°180.0°
O1ACGACBACAA0.0°80.7°
O1ACGACBAHBA1119.1°41.6°
O1ACGACBAHBA2120.0°157.7°
H1AO1ACGAO2A0.0°179.9°
H1AO1ACGACBA179.8°0.1°
O2ACGACBACAA179.8°99.2°
O2ACGACBAHBA161.1°138.4°
O2ACGACBAHBA259.9°22.4°
CGACBACAAHBA1119.1°122.2°
CGACBACAAHBA2120.0°121.2°
CGACBAHBA1HBA2119.4°116.8°
CGACBACAACC5178.1°164.6°
CGACBACAAHAA161.7°42.8°
CGACBACAAHAA258.2°73.6°
CAACBAHBA1HBA2119.4°117.7°
CBACAACC5HAA1120.2°121.8°
CBACAACC5HAA2120.0°121.7°
CBACAAHAA1HAA2120.1°117.5°
CBACAACC5CC4128.8°90.1°
CBACAACC5CC652.3°90.0°
HBA1CBACAACC559.1°73.2°
HBA1CBACAAHAA1179.3°164.9°
HBA1CBACAAHAA260.9°48.6°
HBA2CBACAACC561.9°43.4°
HBA2CBACAAHAA158.4°78.5°
HBA2CBACAAHAA2178.2°165.2°
CC5CAAHAA1HAA2120.1°117.7°
CAACC5CC4CC6178.9°179.9°
CAACC5CC4CC3179.1°178.9°
CAACC5CC4HC40.9°0.1°
CAACC5CC6CC1179.7°179.1°
CAACC5CC6HC60.3°0.3°
HAA1CAACC5CC48.6°148.1°
HAA1CAACC5CC6172.5°31.8°
HAA2CAACC5CC4111.2°31.6°
HAA2CAACC5CC667.7°148.3°
CC5CC4CC3HC4180.0°179.0°
CC5CC4CC3CC20.6°4.9°
CC5CC4CC3HC3179.4°178.3°
CC4CC5CC6CC10.8°1.0°
CC4CC5CC6HC6179.1°179.8°
CC6CC5CC4CC30.2°1.2°
CC6CC5CC4HC4179.8°179.8°
CC5CC6CC1CC20.6°4.6°
CC5CC6CC1NA179.5°179.2°
CC5CC6CC1HC6180.0°178.8°
CC4CC3CC2HC3180.0°173.5°
CC4CC3CC2NB178.6°175.8°
CC4CC3CC2CC10.8°8.4°
HC4CC4CC3CC2179.4°176.1°
HC4CC4CC3HC30.6°2.7°
CC3CC2NBCC1177.9°168.5°
CC3CC2NBFE152.2°130.0°
CC3CC2NBCB28.5°23.4°
CC3CC2CC1NA178.9°176.2°
CC3CC2CC1CC60.2°8.2°
HC3CC3CC2NB1.4°10.8°
HC3CC3CC2CC1179.2°178.2°
CC2NBFECB179.3°137.0°
CC2NBFEOB163.2°138.2°
CC2NBFEOA102.3°62.5°
CC2NBFENA30.1°45.3°
CC2NBCBCB1170.3°169.6°
CC2NBCBHB9.7°10.5°
NBCC2CC1NA1.1°6.0°
NBCC2CC1CC6178.0°178.4°
CC1CC2NBFE25.6°38.4°
CC1CC2NBCB153.6°145.0°
CC2CC1NAFE29.0°45.7°
CC2CC1NACA152.8°158.7°
CC2CC1NACC6179.0°175.0°
CC2CC1CC6HC6179.4°176.6°
NBFEOBOA112.9°168.4°
NBFEOBNA33.0°7.5°
NBFEOANA67.7°14.2°
NBFEOBCB221.1°53.8°
FENBCBCB110.6°67.9°
FENBCBHB169.4°112.0°
NBFEOACA2116.3°43.1°
NBFENACA149.1°171.8°
NBFENACC132.8°46.2°
CBNBFEOB17.5°1.2°
CBNBFEOA77.0°160.5°
CBNBFENA149.2°177.8°
NBCBCB1CB22.3°106.4°
NBCBCB1CB6178.6°85.1°
NBCBCB1HB180.0°179.9°
OBFEOANA156.2°172.8°
FEOBCB2CB115.9°48.0°
FEOBCB2CB3162.6°119.5°
OBFEOACA2155.2°115.5°
OBFENACA114.5°163.0°
OBFENACC167.3°55.1°
OAFEOBCB291.8°114.6°
FEOACA2CA3138.0°112.5°
FEOACA2CA140.7°54.9°
OAFENACA31.6°1.0°
OAFENACC1150.3°143.0°
NAFEOBCB211.9°46.4°
NAFEOACA248.6°57.3°
FENACACA110.6°67.1°
FENACACC1178.0°123.3°
FENACAHA169.4°112.9°
FENACC1CC6150.0°139.3°
OBCB2CB1CB3178.4°168.4°
OBCB2CB1CB6179.7°178.7°
OBCB2CB1CB1.3°12.6°
OBCB2CB3CB4179.2°175.1°
OBCB2CB3HB30.7°7.5°
CB2CB1CB6CB179.1°168.0°
CB2CB1CB6CB51.3°8.1°
CB2CB1CB6HB6178.7°174.8°
CB1CB2CB3CB40.8°7.6°
CB1CB2CB3HB3179.2°175.0°
CB2CB1CBHB177.7°73.5°
CB3CB2CB1CB61.3°10.3°
CB3CB2CB1CB179.6°179.0°
CB2CB3CB4CB50.3°2.6°
CB2CB3CB4HB3180.0°177.3°
CB2CB3CB4HB4179.6°177.4°
CB1CB6CB5HB6180.0°177.1°
CB1CB6CB5CB40.9°2.7°
CB1CB6CB5HB5179.1°177.3°
CB6CB1CBHB1.4°95.0°
CBCB1CB6CB5179.6°176.1°
CBCB1CB6HB60.4°6.8°
CB6CB5CB4HB5180.0°180.0°
CB6CB5CB4CB30.4°0.1°
CB6CB5CB4HB4179.6°180.0°
HB6CB6CB5CB4179.1°179.8°
HB6CB6CB5HB50.9°0.2°
CB5CB4CB3HB4180.0°180.0°
CB5CB4CB3HB3179.6°179.9°
HB5CB5CB4CB3179.6°179.9°
HB5CB5CB4HB40.4°0.0°
HB4CB4CB3HB30.4°0.1°
OACA2CA3CA1178.6°167.2°
OACA2CA3CA4179.0°174.9°
OACA2CA3HA31.0°7.8°
OACA2CA1CA6179.4°179.1°
OACA2CA1CA1.8°12.3°
CA2CA3CA4HA3180.0°177.3°
CA2CA3CA4CA50.3°2.6°
CA2CA3CA4HA4179.7°177.3°
CA3CA2CA1CA60.8°10.5°
CA3CA2CA1CA179.5°179.1°
CA1CA2CA3CA40.4°7.7°
CA1CA2CA3HA3179.6°175.0°
CA2CA1CA6CA51.1°8.3°
CA2CA1CA6CA178.7°167.6°
CA2CA1CA6HA6178.9°174.8°
CA2CA1CANA13.5°101.3°
CA2CA1CAHA166.5°78.7°
CA3CA4CA5HA4180.0°180.0°
CA3CA4CA5CA60.7°0.1°
CA3CA4CA5HA5179.3°179.9°
HA3CA3CA4CA5179.6°179.9°
HA3CA3CA4HA40.3°0.0°
CA4CA5CA6HA5180.0°180.0°
CA4CA5CA6CA11.1°2.8°
CA4CA5CA6HA6178.9°179.7°
HA4CA4CA5CA6179.3°179.9°
HA4CA4CA5HA50.7°0.1°
CA5CA6CA1HA6180.0°176.9°
CA5CA6CA1CA179.8°175.9°
HA5CA5CA6CA1178.9°177.2°
HA5CA5CA6HA61.1°0.3°
CA6CA1CANA167.8°90.3°
CA6CA1CAHA12.2°89.7°
HA6CA6CA1CA0.2°7.2°
CA1CANAHA180.0°180.0°
CA1CANACC1171.4°169.7°
CANACC1CC628.2°26.3°
HACANACC18.6°10.4°
NACC1CC6HC60.5°2.0°

259987

PDB entries from 2026-09-23

PDB statisticsPDBj update infoContact PDBjnumon