Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

YOJ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
F51C50sing1.35Å1.37Å
F31C30sing1.35Å1.38Å
C29C30doub1.38Å1.40ÅAromatic
C29C28sing1.38Å1.39ÅAromatic
C50C49doub1.38Å1.39ÅAromatic
C50C05sing1.38Å1.41ÅAromatic
C49C08sing1.38Å1.38ÅAromatic
N01S02sing1.66Å1.72Å
C30C32sing1.40Å1.43ÅAromatic
C28C27doub1.39Å1.39ÅAromatic
O03S02doub1.42Å1.46Å
C05S02sing1.76Å1.83Å
C05C06doub1.38Å1.39ÅAromatic
C08C09sing1.51Å1.52Å
C08C07doub1.38Å1.38ÅAromatic
S02O04doub1.42Å1.47Å
C09C10sing1.51Å1.56Å
C32C33sing1.48Å1.43Å
C32C48doub1.39Å1.40ÅAromatic
C47C33doub1.39Å1.38ÅAromatic
C47C46sing1.38Å1.41ÅAromatic
C27C48sing1.39Å1.40ÅAromatic
C27C26sing1.48Å1.42Å
C33C34sing1.39Å1.39ÅAromatic
C46C36doub1.39Å1.40ÅAromatic
C06C07sing1.38Å1.38ÅAromatic
C10C26sing1.41Å1.37ÅAromatic
C10C11doub1.35Å1.44ÅAromatic
C26N25doub1.32Å1.32ÅAromatic
C11C12sing1.51Å1.56Å
C11N16sing1.36Å1.34ÅAromatic
C34C35doub1.38Å1.42ÅAromatic
C36O37sing1.36Å1.43Å
C36C35sing1.39Å1.40ÅAromatic
N25N16sing1.40Å1.36ÅAromatic
C12C13sing1.53Å1.56Å
O37C38sing1.35Å1.41Å
O45C43doub1.22Å1.30Å
N16C17sing1.39Å1.34Å
C17N18doub1.29Å1.33ÅAromatic
C17S24sing1.76Å1.73ÅAromatic
N18C19sing1.34Å1.34ÅAromatic
C13C15sing1.53Å1.53Å
C13C14sing1.53Å1.54Å
C43C42sing1.47Å1.50Å
C43O44sing1.35Å1.29Å
C38C42doub1.39Å1.38ÅAromatic
C38N39sing1.35Å1.33ÅAromatic
O22C20doub1.22Å1.27Å
C15C14sing1.53Å1.52Å
C42N41sing1.35Å1.30ÅAromatic
C19C20sing1.47Å1.53Å
C19C23doub1.35Å1.38ÅAromatic
N39N40sing1.40Å1.35ÅAromatic
C20O21sing1.35Å1.27Å
S24C23sing1.71Å1.72ÅAromatic
N41N40doub1.29Å1.36ÅAromatic
C13H1sing1.09Å1.10Å
C15H2sing1.09Å1.10Å
C15H3sing1.09Å1.10Å
C28H4sing1.08Å1.08Å
N01H5sing0.97Å1.00Å
N01H6sing0.97Å1.00Å
C06H7sing1.08Å1.08Å
C07H8sing1.08Å1.08Å
C09H9sing1.09Å1.10Å
C09H10sing1.09Å1.10Å
C12H11sing1.09Å1.10Å
C12H12sing1.09Å1.10Å
C14H13sing1.09Å1.10Å
C14H14sing1.09Å1.10Å
O21H15sing0.97Å0.95Å
C23H16sing1.08Å1.08Å
C29H17sing1.08Å1.08Å
C34H18sing1.08Å1.08Å
C35H19sing1.08Å1.08Å
N39H20sing0.97Å1.00Å
O44H21sing0.97Å0.95Å
C46H22sing1.08Å1.08Å
C47H23sing1.08Å1.08Å
C48H24sing1.08Å1.08Å
C49H25sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
F51C50C49117.1°120.0°
F51C50C05123.9°120.1°
F31C30C29115.3°120.0°
F31C30C32124.3°119.9°
C30C29C28120.6°120.2°
C29C30C32120.4°120.1°
C30C29H17119.7°119.9°
C29C28C27119.3°120.2°
C29C28H4120.4°119.9°
C28C29H17119.7°119.9°
C49C50C05119.0°119.9°
C50C49C08118.1°120.0°
C50C49H25120.9°120.0°
C50C05S02124.3°120.0°
C50C05C06121.2°120.0°
C49C08C09119.4°120.0°
C49C08C07123.5°120.0°
C08C49H25120.9°120.0°
N01S02O03111.3°106.4°
N01S02C05110.9°107.2°
N01S02O04113.0°106.4°
S02N01H5109.5°120.0°
S02N01H6109.4°120.0°
C30C32C33124.3°120.1°
C30C32C48118.0°119.8°
C28C27C48121.0°119.9°
C28C27C26119.8°120.1°
C27C28H4120.4°119.9°
O03S02C05111.1°106.4°
O03S02O0499.7°123.2°
S02C05C06114.6°120.0°
C05S02O04110.4°106.4°
C05C06C07119.3°120.0°
C05C06H7120.3°120.0°
C09C08C07117.0°120.0°
C08C09C10109.6°109.5°
C08C09H9109.4°109.5°
C08C09H10109.4°109.5°
C08C07C06118.8°120.1°
C08C07H8120.6°120.0°
C09C10C26113.6°126.0°
C09C10C11139.6°126.0°
C10C09H9109.4°109.5°
C10C09H10109.4°109.5°
C33C32C48117.7°120.1°
C32C33C47120.8°120.0°
C32C33C34121.3°120.1°
C32C48C27120.8°119.8°
C32C48H24119.6°120.1°
C33C47C46122.1°119.9°
C47C33C34117.8°119.9°
C33C47H23119.0°120.0°
C47C46C36120.5°120.1°
C47C46H22119.8°119.9°
C46C47H23119.0°120.1°
C48C27C26119.2°120.0°
C27C48H24119.6°120.1°
C27C26C10126.3°126.0°
C27C26N25125.7°125.9°
C33C34C35120.8°120.0°
C33C34H18119.6°120.0°
C46C36O37116.7°119.9°
C46C36C35117.9°120.1°
C36C46H22119.7°120.0°
C07C06H7120.4°120.0°
C06C07H8120.6°120.0°
C26C10C11106.8°107.9°
C10C26N25108.0°108.1°
C10C11C12134.6°126.1°
C10C11N16105.7°107.8°
C26N25N16110.1°108.1°
C12C11N16119.7°126.1°
C11C12C13105.9°109.5°
C11C12H11110.3°109.5°
C11C12H12110.4°109.5°
C11N16N25109.4°108.0°
C11N16C17132.0°126.0°
C34C35C36120.9°120.1°
C35C34H18119.6°120.0°
C34C35H19119.6°120.0°
O37C36C35125.4°120.0°
C36O37C38117.1°117.9°
C36C35H19119.6°120.0°
N25N16C17118.4°126.0°
C12C13C15116.0°117.5°
C12C13C14119.1°117.5°
C12C13H1116.5°115.5°
C13C12H11110.4°109.5°
C13C12H12110.4°109.5°
O37C38C42123.6°126.8°
O37C38N39128.8°126.8°
O45C43C42119.7°120.0°
O45C43O44121.4°120.0°
N16C17N18132.0°125.2°
N16C17S24121.4°125.3°
N18C17S24106.6°109.5°
C17N18C19116.2°115.7°
C17S24C2395.6°90.7°
N18C19C20125.0°122.5°
N18C19C23117.0°115.0°
C15C13C1459.4°60.0°
C13C15C1460.5°60.0°
C15C13H1116.9°117.5°
C13C15H2119.9°117.5°
C13C15H3119.9°117.5°
C13C14C1560.1°60.0°
C14C13H1116.8°117.5°
C13C14H13120.0°117.5°
C13C14H14120.0°117.5°
C42C43O44118.9°120.0°
C43C42C38125.4°126.0°
C43C42N41126.7°126.0°
C43O44H21109.5°116.9°
C42C38N39107.6°106.4°
C38C42N41107.8°108.0°
C38N39N40108.3°106.9°
C38N39H20125.8°126.5°
O22C20C19119.8°120.0°
O22C20O21122.7°120.1°
C14C15H2119.9°117.5°
C14C15H3119.9°117.5°
C15C14H13120.0°117.5°
C15C14H14120.0°117.5°
C42N41N40109.6°109.8°
C20C19C23118.0°122.5°
C19C20O21117.5°120.0°
C19C23S24104.6°109.1°
C19C23H16127.7°125.5°
N39N40N41106.7°108.8°
N40N39H20125.9°126.5°
C20O21H15109.5°116.9°
S24C23H16127.7°125.4°
H2C15H3109.5°115.5°
H5N01H6109.5°120.0°
H9C09H10109.5°109.5°
H11C12H12109.5°109.4°
H13C14H14109.5°115.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
F51C50C49C05179.9°179.5°
F51C50C49C08180.0°180.0°
F51C50C05S020.1°0.3°
F51C50C05C06179.6°180.0°
F51C50C49H250.0°0.3°
F31C30C29C32179.7°180.0°
F31C30C29C28179.6°180.0°
F31C30C32C330.6°0.0°
F31C30C32C48179.5°179.8°
F31C30C29H170.4°0.0°
C30C29C28H17180.0°180.0°
C30C29C28C270.5°0.0°
C29C30C32C33179.1°180.0°
C29C30C32C480.8°0.2°
C30C29C28H4179.5°179.7°
C28C29C30C320.7°0.0°
C29C28C27H4180.0°179.7°
C29C28C27C480.4°0.3°
C29C28C27C26178.5°179.8°
C50C49C08H25180.0°179.7°
C49C50C05S02179.8°179.7°
C49C50C05C060.3°0.5°
C50C49C08C09179.8°179.7°
C50C49C08C070.4°0.3°
C05C50C49C080.0°0.6°
C50C05S02N0160.3°65.3°
C50C05S02O0364.0°178.8°
C50C05S02C06179.6°179.7°
C50C05S02O04173.6°48.3°
C50C05C06C071.0°0.3°
C50C05C06H7178.9°179.7°
C05C50C49H25180.0°179.7°
C49C08C09C07179.9°180.0°
C49C08C09C10126.4°99.6°
C49C08C07C061.1°0.0°
C49C08C07H8178.9°180.0°
C49C08C09H9113.5°140.4°
C49C08C09H106.4°20.4°
N01S02O03C05124.1°114.1°
N01S02O03O04119.5°122.9°
N01S02C05O04126.0°113.5°
N01S02C05C06120.1°115.0°
S02N01H5H6120.0°179.9°
C30C32C33C48179.9°179.7°
C30C32C33C4769.1°129.7°
C30C32C48C270.7°0.5°
C30C32C33C34110.4°50.0°
C32C30C29H17179.3°180.0°
C30C32C48H24179.3°180.0°
C28C27C48C320.6°0.5°
C28C27C48C26178.9°180.0°
C28C27C26C1088.2°45.2°
C28C27C26N2592.1°134.8°
C27C28C29H17179.5°180.0°
C28C27C48H24179.4°180.0°
O03S02C05O04109.6°133.0°
O03S02C05C06115.5°1.5°
O03S02N01H5180.0°23.6°
O03S02N01H660.0°156.5°
S02C05C06C07179.4°180.0°
C05S02N01H555.8°90.0°
C05S02N01H6175.8°89.9°
S02C05C06H70.6°0.0°
C05C06C07C081.4°0.0°
C06C05S02O045.9°131.5°
C05C06C07H7180.0°180.0°
C05C06C07H8178.6°180.0°
C08C09C10H9120.0°120.0°
C08C09C10H10120.0°120.0°
C09C08C07C06179.1°180.0°
C08C09C10C26179.6°82.6°
C08C09C10C110.1°97.7°
C09C08C07H81.0°0.0°
C08C09H9H10119.9°120.0°
C09C08C49H250.2°0.0°
C07C08C09C1053.7°80.4°
C08C07C06H8180.0°180.0°
C08C07C06H7178.6°180.0°
C07C08C09H966.3°39.7°
C07C08C09H10173.7°159.6°
C07C08C49H25179.7°180.0°
O04S02N01H568.8°156.5°
O04S02N01H651.2°23.6°
C09C10C26C270.2°0.3°
C09C10C26C11179.7°179.7°
C09C10C26N25180.0°179.7°
C09C10C11C121.6°0.3°
C09C10C11N16179.0°179.7°
C10C09H9H10119.9°120.0°
C32C33C47C34179.5°179.7°
C32C33C47C46179.6°179.8°
C33C32C48C27179.2°179.7°
C32C33C34C35179.0°180.0°
C32C33C34H181.0°0.1°
C32C33C47H230.4°0.1°
C33C32C48H240.9°0.3°
C48C32C33C47111.0°50.0°
C32C48C27H24180.0°179.5°
C32C48C27C26178.3°179.5°
C48C32C33C3469.5°130.3°
C33C47C46H23180.0°179.7°
C33C47C46C361.0°0.5°
C47C33C34C350.5°0.3°
C47C33C34H18179.5°179.8°
C33C47C46H22179.0°179.7°
C46C47C33C340.9°0.5°
C47C46C36H22180.0°179.9°
C47C46C36O37179.0°179.7°
C47C46C36C350.4°0.2°
C48C27C26C1092.9°134.8°
C48C27C26N2586.8°45.2°
C48C27C28H4179.6°180.0°
C27C26C10N25179.8°180.0°
C27C26C10C11179.9°180.0°
C27C26N25N16179.2°180.0°
C26C27C28H41.5°0.1°
C26C27C48H241.7°0.0°
C33C34C35H18180.0°180.0°
C33C34C35C362.0°0.0°
C33C34C35H19178.0°180.0°
C34C33C47H23179.1°179.7°
C46C36C35C341.9°0.1°
C46C36O37C35178.4°179.9°
C46C36O37C38140.6°75.4°
C46C36C35H19178.1°180.0°
C36C46C47H23179.0°179.8°
C26C10C11C12178.8°180.0°
C26C10C11N160.5°0.1°
C10C26N25N161.1°0.0°
C26C10C09H960.4°37.3°
C26C10C09H1059.5°157.3°
C11C10C26N250.3°0.0°
C10C11C12N16179.3°179.9°
C10C11N16N251.1°0.1°
C10C11C12C13103.8°97.9°
C10C11N16C17176.9°180.0°
C11C10C09H9120.1°142.3°
C11C10C09H10120.0°22.3°
C10C11C12H11136.8°142.1°
C10C11C12H1215.7°22.1°
C26N25N16C111.4°0.1°
C26N25N16C17177.9°180.0°
C12C11N16N25178.3°180.0°
C11C12C13H11119.4°120.1°
C11C12C13H12119.5°120.0°
C12C11N16C172.5°0.1°
C11C12C13C15162.9°169.6°
C11C12C13C1495.0°121.7°
C11C12C13H153.5°24.0°
C11C12H11H12121.6°120.0°
C11N16N25C17176.4°179.9°
N16C11C12C1375.5°82.0°
C11N16C17N1877.8°180.0°
C11N16C17S24105.4°0.4°
N16C11C12H1144.0°38.0°
N16C11C12H12165.1°157.9°
C34C35C36O37179.7°180.0°
C34C35C36H19180.0°180.0°
C36O37C38C42166.6°174.9°
C36O37C38N3915.3°5.5°
O37C36C35H190.3°0.1°
O37C36C46H221.0°0.1°
C35C36O37C3841.0°104.7°
C36C35C34H18178.0°179.9°
C35C36C46H22179.6°180.0°
N25N16C17N18106.7°0.1°
N25N16C17S2470.1°179.7°
C12C13C15C14109.8°107.5°
C12C13C15H1143.5°145.0°
C12C13C14H1148.4°145.0°
C12C13C15H20.3°0.0°
C12C13C15H3140.6°145.1°
C13C12H11H12121.7°120.0°
C12C13C14H13145.8°145.0°
C12C13C14H144.8°0.0°
O37C38C42C430.2°0.1°
O37C38C42N39178.4°179.7°
O37C38C42N41177.7°179.9°
O37C38N39N40178.5°179.9°
O37C38N39H201.5°0.1°
O45C43C42O44179.9°180.0°
O45C43C42C381.2°0.1°
O45C43C42N41176.0°179.9°
O45C43O44H210.0°0.0°
N16C17N18S24177.1°179.7°
N16C17N18C19178.0°179.7°
N16C17S24C23178.1°179.7°
C17N18C19C20179.2°180.0°
C17N18C19C230.8°0.0°
N18C17S24C230.6°0.0°
S24C17N18C190.8°0.0°
C17S24C23C190.1°0.0°
C17S24C23H16179.9°180.0°
N18C19C20O2238.3°180.0°
N18C19C20C23180.0°179.9°
N18C19C20O21143.1°0.0°
N18C19C23S240.3°0.0°
N18C19C23H16179.7°180.0°
C15C13C14H1106.9°107.5°
C13C15C14H2109.6°107.5°
C13C15C14H3109.6°107.5°
C13C15H2H3144.5°145.8°
C15C13C12H1143.4°49.6°
C15C13C12H1277.7°70.4°
C15C13C14H13109.5°107.5°
C15C13C14H14109.5°107.5°
C14C13C12H1124.4°118.2°
C14C13C12H12145.6°1.7°
C13C14H13H14144.7°145.7°
C43C42C38N41177.6°179.8°
C43C42C38N39178.2°179.7°
C43C42N41N40178.8°179.8°
C42C43O44H21179.9°180.0°
O44C43C42C38179.0°180.0°
O44C43C42N413.9°0.2°
C42C38N39N400.2°0.3°
C38C42N41N401.3°0.4°
C42C38N39H20179.8°179.8°
N39C38C42N410.7°0.4°
C38N39N40H20180.0°179.9°
C38N39N40N411.0°0.0°
O22C20C19O21178.7°179.9°
O22C20C19C23141.7°0.1°
O22C20O21H150.0°0.0°
C14C15H2H3144.4°145.6°
C15C14H13H14144.7°145.7°
C42N41N40N391.4°0.2°
C20C19C23S24179.7°180.0°
C19C20O21H15178.6°180.0°
C20C19C23H160.3°0.1°
C23C19C20O2136.9°180.0°
C19C23S24H16180.0°179.9°
N41N40N39H20179.1°180.0°
H1C13C15H2143.7°145.0°
H1C13C15H32.9°0.1°
H1C13C12H11172.9°96.1°
H1C13C12H1265.9°144.0°
H1C13C14H132.6°0.0°
H1C13C14H14143.6°145.0°
H2C15C14H13140.9°145.0°
H2C15C14H140.1°0.1°
H3C15C14H130.1°0.1°
H3C15C14H14140.9°145.0°
H4C28C29H170.5°0.3°
H7C06C07H81.4°0.0°
H18C34C35H192.0°0.0°
H22C46C47H231.0°0.1°

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon