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YO7

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O31C31sing1.43Å1.44Å
O41C41sing1.43Å1.44Å
O6C6doub1.22Å1.25Å
C31C41sing1.53Å1.54Å
C31C21sing1.53Å1.55Å
C41C51sing1.53Å1.55Å
C6N1sing1.35Å1.37Å
C6C5sing1.41Å1.50Å
O21C21sing1.43Å1.43Å
C51C61sing1.53Å1.56Å
C51O51sing1.43Å1.42Å
N1C2sing1.36Å1.39Å
C21C11sing1.53Å1.52Å
N7C5sing1.36Å1.34ÅAromatic
N7C8doub1.30Å1.35ÅAromatic
O71C71sing1.43Å1.43Å
C5C4doub1.40Å1.38ÅAromatic
C61O6Asing1.43Å1.42Å
C61C71sing1.53Å1.54Å
C11O51sing1.43Å1.42Å
C11O1Bsing1.43Å1.44Å
C8N9sing1.36Å1.36ÅAromatic
C2N2sing1.37Å1.37Å
C2N3doub1.31Å1.36Å
C4N3sing1.34Å1.35Å
C4N9sing1.37Å1.33ÅAromatic
O1APAdoub1.48Å1.51Å
N9C1'sing1.46Å1.44Å
O1BPBsing1.61Å1.60Å
O2'C2'sing1.43Å1.44Å
C2'C1'sing1.55Å1.53Å
C2'C3'sing1.55Å1.52Å
C1'O4'sing1.44Å1.42Å
PAO3Asing1.61Å1.63Å
PAO5'sing1.61Å1.63Å
PAO2Asing1.61Å1.53Å
O2BPBdoub1.48Å1.55Å
O3APBsing1.61Å1.61Å
O5'C5'sing1.43Å1.44Å
PBO3Bsing1.61Å1.54Å
O4'C4'sing1.44Å1.45Å
C3'C4'sing1.54Å1.52Å
C3'O3'sing1.43Å1.42Å
C5'C4'sing1.53Å1.53Å
O3BH1sing0.97Å0.95Å
C11H2sing1.09Å1.10Å
C21H3sing1.09Å1.10Å
O21H4sing0.97Å0.95Å
C31H5sing1.09Å1.10Å
O31H6sing0.97Å0.95Å
C41H7sing1.09Å1.10Å
O41H8sing0.97Å0.95Å
C51H9sing1.09Å1.10Å
C61H10sing1.09Å1.10Å
C71H11sing1.09Å1.10Å
C71H12sing1.09Å1.10Å
O71H13sing0.97Å0.95Å
O6AH14sing0.97Å0.95Å
O2AH15sing0.97Å0.95Å
C5'H16sing1.09Å1.10Å
C5'H17sing1.09Å1.10Å
C4'H18sing1.09Å1.10Å
C3'H19sing1.09Å1.10Å
O3'H20sing0.97Å0.95Å
C2'H21sing1.09Å1.10Å
O2'H22sing0.97Å0.95Å
C1'H23sing1.09Å1.10Å
N2H24sing0.97Å1.00Å
N2H25sing0.97Å1.00Å
C8H26sing1.08Å1.08Å
N1H27sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O31C31C41111.8°109.5°
O31C31C21110.9°109.5°
O31C31H5109.1°109.6°
C31O31H6109.5°114.0°
O41C41C31115.4°109.5°
O41C41C51108.4°109.5°
O41C41H7108.0°109.6°
C41O41H8109.5°114.0°
O6C6N1123.0°120.8°
O6C6C5118.4°120.8°
C41C31C21109.4°109.0°
C31C41C51111.2°109.1°
C41C31H5107.8°109.5°
C31C41H7106.8°109.5°
C31C21O21110.1°109.5°
C31C21C11112.0°109.2°
C31C21H3107.9°109.5°
C21C31H5107.7°109.6°
C41C51C61115.0°109.5°
C41C51O51107.1°109.4°
C51C41H7106.6°109.5°
C41C51H9108.1°109.5°
N1C6C5118.6°118.4°
C6N1C2120.1°120.3°
C6N1H27120.0°119.8°
C6C5N7133.8°134.2°
C6C5C4117.9°118.6°
O21C21C11109.3°109.6°
O21C21H3109.3°109.5°
C21O21H4109.5°113.9°
C61C51O51108.6°109.5°
C51C61O6A109.9°109.5°
C51C61C71114.0°109.5°
C61C51H9108.0°109.4°
C51C61H10108.2°109.5°
C51O51C11120.4°114.1°
O51C51H9109.9°109.5°
N1C2N2123.5°119.0°
N1C2N3120.3°121.9°
C2N1H27120.0°119.9°
C21C11O51109.0°109.4°
C21C11O1B110.6°109.5°
C21C11H2109.6°109.5°
C11C21H3108.1°109.6°
C5N7C8107.3°109.3°
N7C5C4108.3°107.2°
N7C8N9108.5°109.9°
N7C8H26125.8°125.1°
O71C71C61104.5°109.5°
O71C71H11110.7°109.5°
O71C71H12110.7°109.5°
C71O71H13109.5°114.0°
C5C4N3120.2°119.7°
C5C4N9107.4°106.1°
O6AC61C71106.1°109.5°
O6AC61H10110.1°109.4°
C61O6AH14109.5°113.9°
C71C61H10108.5°109.5°
C61C71H11110.7°109.4°
C61C71H12110.7°109.5°
O51C11O1B105.7°109.5°
O51C11H2111.1°109.5°
C11O1BPB127.5°123.0°
O1BC11H2110.8°109.5°
C8N9C4108.4°107.5°
C8N9C1'126.0°126.3°
N9C8H26125.8°125.1°
N2C2N3116.2°119.1°
C2N2H24120.0°120.0°
C2N2H25120.0°120.0°
C2N3C4123.0°121.2°
N3C4N9132.4°134.2°
C4N9C1'125.5°126.3°
O1APAO3A115.2°109.5°
O1APAO5'106.5°109.5°
O1APAO2A114.8°109.5°
N9C1'C2'113.4°110.4°
N9C1'O4'108.1°110.4°
N9C1'H23109.9°110.4°
O1BPBO2B112.9°109.5°
O1BPBO3A99.4°109.4°
O1BPBO3B110.1°109.5°
O2'C2'C1'108.3°110.5°
O2'C2'C3'114.6°110.6°
O2'C2'H21111.1°110.6°
C2'O2'H22109.5°114.0°
C1'C2'C3'102.8°104.0°
C2'C1'O4'106.4°104.9°
C1'C2'H21109.8°110.5°
C2'C1'H23108.8°110.4°
C2'C3'C4'105.5°104.1°
C2'C3'O3'109.2°110.5°
C2'C3'H19111.2°110.6°
C3'C2'H21109.9°110.4°
C1'O4'C4'110.6°105.2°
O4'C1'H23110.2°110.3°
O3APAO5'100.8°109.4°
O3APAO2A108.3°109.4°
PAO3APB127.2°133.9°
O5'PAO2A110.3°109.4°
PAO5'C5'118.1°123.0°
PAO2AH15109.5°114.0°
O2BPBO3A103.1°109.5°
O2BPBO3B116.7°109.5°
O3APBO3B113.2°109.5°
O5'C5'C4'107.2°109.4°
O5'C5'H16110.0°109.5°
O5'C5'H17110.1°109.5°
PBO3BH1109.5°114.0°
O4'C4'C3'106.2°104.9°
O4'C4'C5'110.3°110.4°
O4'C4'H18110.1°110.4°
C4'C3'O3'106.5°110.5°
C3'C4'C5'112.0°110.4°
C3'C4'H18109.2°110.4°
C4'C3'H19111.3°110.5°
O3'C3'H19112.8°110.4°
C3'O3'H20109.5°114.0°
C4'C5'H16110.0°109.5°
C4'C5'H17110.0°109.4°
C5'C4'H18109.1°110.4°
H11C71H12109.5°109.5°
H16C5'H17109.5°109.5°
H24N2H25119.9°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O31C31C41O4158.0°63.3°
O31C31C41C21123.3°119.9°
O31C31C41H5119.8°120.2°
O31C31C21H5119.3°120.3°
O31C31C41C51177.9°176.8°
O31C31C21O2161.5°63.2°
O31C31C21C11176.6°176.8°
O31C31C21H357.7°56.9°
O31C31C41H762.0°56.9°
O41C41C31C51124.0°119.9°
O41C41C31H7120.1°120.2°
O41C41C31C21178.7°176.9°
O41C41C51H7116.1°120.2°
O41C41C51C6156.8°62.5°
O41C41C51O51177.7°177.5°
O41C41C31H561.8°57.0°
O41C41C51H964.0°57.5°
O6C6N1C5179.6°179.5°
O6C6N1C2179.6°179.9°
O6C6C5N70.6°0.2°
O6C6C5C4179.6°179.9°
O6C6N1H270.4°0.5°
C41C31C21H5117.0°119.9°
C31C41C51H7116.0°119.9°
C41C31C21O21174.7°177.0°
C31C41C51C61175.3°177.6°
C31C41C51O5154.4°57.6°
C41C31C21C1152.9°57.0°
C41C31C21H366.0°62.9°
C41C31O31H6180.0°180.0°
C31C41O41H8180.0°60.0°
C31C41C51H963.9°62.4°
C21C31C41C5154.7°57.0°
C31C21O21C11123.5°119.7°
C31C21O21H3118.3°120.1°
C31C21C11H3118.7°119.9°
C31C21C11O5150.8°57.6°
C31C21C11O1B166.6°177.6°
C31C21C11H271.0°62.4°
C31C21O21H4171.6°179.7°
C21C31O31H657.6°60.4°
C21C31C41H761.2°62.9°
C41C51C61O51120.0°120.0°
C41C51C61H9120.8°120.0°
C41C51O51H9117.2°120.0°
C41C51C61O6A75.6°55.0°
C41C51C61C71165.4°175.0°
C41C51O51C1158.4°61.2°
C51C41C31H562.3°62.9°
C51C41O41H854.5°179.7°
C41C51C61H1044.6°64.9°
C6N1C2H27180.0°179.6°
N1C6C5N7179.1°179.7°
N1C6C5C40.0°0.4°
C6N1C2N2179.1°179.8°
C6N1C2N30.4°0.2°
C5C6N1C20.0°0.4°
C6C5N7C4179.1°179.9°
C6C5N7C8178.0°179.9°
C6C5C4N30.4°0.2°
C6C5C4N9179.1°179.8°
C5C6N1H27180.0°180.0°
O21C21C11H3118.9°120.2°
O21C21C11O51173.1°177.6°
O21C21C11O1B71.1°62.4°
O21C21C11H251.4°57.6°
O21C21C31H557.8°57.1°
C61C51O51H9118.0°120.0°
C51C61C71O7176.2°175.0°
C51C61O6AC71123.7°120.1°
C51C61O6AH10119.1°120.0°
C51C61C71H10120.6°120.1°
C61C51O51C11176.8°178.8°
C61C51C41H759.3°57.7°
C51C61C71H11164.6°55.0°
C51C61C71H1243.0°65.0°
C51C61O6AH14180.0°60.0°
C51O51C11C2157.0°61.2°
O51C51C61O6A44.4°65.0°
O51C51C61C7174.6°55.0°
C51O51C11O1B175.9°178.9°
C51O51C11H263.8°58.8°
O51C51C41H761.6°62.3°
O51C51C61H10164.7°175.1°
N1C2N2N3178.8°180.0°
N1C2N3C40.8°0.0°
N1C2N2H24178.8°180.0°
N1C2N2H251.2°0.0°
C21C11O51O1B118.9°120.0°
C21C11O51H2120.9°120.0°
C21C11O1BH2121.8°120.0°
C21C11O1BPB145.0°150.1°
C11C21O21H464.9°59.9°
C11C21C31H564.1°62.9°
C5N7C8N93.0°0.2°
N7C5C4N3179.7°179.8°
N7C5C4N91.7°0.1°
C5N7C8H26177.0°179.9°
C8N7C5C42.9°0.0°
N7C8N9H26180.0°180.0°
N7C8N9C42.0°0.2°
N7C8N9C1'180.0°180.0°
O71C71C61O6A162.6°65.0°
O71C71C61H11119.2°120.0°
O71C71C61H12119.2°120.0°
O71C71C61H1044.4°55.0°
O71C71H11H12122.3°120.0°
C5C4N9C80.2°0.2°
C5C4N3C20.8°0.0°
C5C4N3N9178.3°179.9°
C5C4N9C1'178.2°180.0°
O6AC61C71H10118.2°119.9°
O6AC61C51H9163.6°175.0°
O6AC61C71H1143.4°175.0°
O6AC61C71H1278.2°55.1°
C71C61C51H944.6°65.0°
C61C71H11H12122.3°120.0°
C61C71O71H13180.0°180.0°
C71C61O6AH1456.3°60.1°
O51C11O1BH2120.4°120.0°
O51C11O1BPB97.2°90.0°
O51C11C21H368.0°62.3°
C11O51C51H958.9°58.9°
C11O1BPBO2B9.7°55.1°
C11O1BPBO3A99.0°175.0°
C11O1BPBO3B142.0°65.0°
O1BC11C21H347.8°57.7°
C8N9C4N3178.2°179.7°
C8N9C4C1'178.0°179.8°
C8N9C1'C2'47.4°95.3°
C8N9C1'O4'70.4°20.2°
C8N9C1'H23169.4°142.4°
N2C2N3C4179.6°180.0°
C2N2H24H25180.0°180.0°
N2C2N1H270.9°0.1°
C2N3C4N9179.1°180.0°
N3C2N2H240.0°0.0°
N3C2N2H25180.0°180.0°
N3C2N1H27179.6°179.8°
N3C4N9C1'0.3°0.1°
C4N9C1'C2'135.0°85.0°
C4N9C1'O4'107.3°159.6°
C4N9C1'H2313.0°37.4°
C4N9C8H26178.0°179.8°
O1APAO3AO5'114.1°120.1°
O1APAO3AO2A130.1°120.0°
O1APAO5'O2A125.2°120.0°
O1APAO3APB80.6°40.0°
O1APAO5'C5'172.7°55.0°
O1APAO2AH150.0°180.0°
N9C1'C2'O2'91.0°98.5°
N9C1'C2'O4'118.7°118.9°
N9C1'C2'H23122.6°122.3°
N9C1'C2'C3'147.4°142.8°
N9C1'O4'H23120.1°122.3°
N9C1'O4'C4'142.0°159.3°
N9C1'C2'H2130.5°24.3°
C1'N9C8H260.0°0.0°
O1BPBO3APA49.9°160.0°
O1BPBO2BO3A106.3°119.9°
O1BPBO2BO3B129.0°120.0°
O1BPBO3AO3B116.7°120.0°
O1BPBO3BH1130.4°60.0°
PBO1BC11H223.2°30.1°
O2'C2'C1'C3'121.6°118.7°
O2'C2'C1'H21121.5°122.7°
O2'C2'C3'H21125.9°122.8°
O2'C2'C1'O4'150.3°142.6°
O2'C2'C3'C4'144.2°118.7°
O2'C2'C3'O3'30.0°0.0°
O2'C2'C3'H1995.1°122.6°
O2'C2'C1'H2331.6°23.8°
C1'C2'C3'H21116.9°118.6°
C2'C1'O4'H23117.8°118.9°
C2'C1'O4'C4'19.9°40.4°
C1'C2'C3'C4'26.9°0.0°
C1'C2'C3'O3'87.3°118.7°
C1'C2'C3'H19147.6°118.7°
C1'C2'O2'H22180.0°180.0°
C3'C2'C1'O4'28.7°23.9°
C2'C3'C4'O4'16.0°23.9°
C2'C3'C4'O3'116.0°118.7°
C2'C3'C4'H19120.7°118.8°
C2'C3'O3'H19124.2°122.7°
C2'C3'C4'C5'104.5°142.8°
C2'C3'C4'H18134.6°94.9°
C2'C3'O3'H20180.0°65.3°
C3'C2'O2'H2266.0°65.3°
C3'C2'C1'H2390.0°94.9°
C1'O4'C4'C3'2.4°40.4°
C1'O4'C4'C5'123.9°159.2°
C1'O4'C4'H18115.6°78.5°
O4'C1'C2'H2188.2°94.6°
O3APAO5'O2A114.2°119.9°
PAO3APBO2B166.3°40.0°
O3APAO5'C5'66.8°175.0°
PAO3APBO3B66.8°80.0°
O3APAO2AH15130.3°60.0°
O5'PAO3APB165.3°160.0°
PAO5'C5'C4'169.5°180.0°
O5'PAO2AH15120.3°59.9°
PAO5'C5'H1649.8°60.0°
PAO5'C5'H1770.9°60.1°
O2APAO3APB49.5°80.0°
O2APAO5'C5'47.5°65.1°
O2BPBO3AO3B126.9°120.0°
O2BPBO3BH10.0°180.0°
O3APBO3BH1119.4°60.0°
O5'C5'C4'O4'65.0°68.0°
O5'C5'C4'C3'53.0°176.6°
O5'C5'C4'H16119.6°120.0°
O5'C5'C4'H17119.7°120.0°
O5'C5'H16H17121.1°120.0°
O5'C5'C4'H18173.9°54.2°
O4'C4'C3'C5'120.5°118.9°
O4'C4'C3'H18118.7°118.9°
O4'C4'C3'O3'100.0°142.6°
O4'C4'C5'H18121.0°122.3°
O4'C4'C5'H16175.3°52.0°
O4'C4'C5'H1754.6°172.0°
O4'C4'C3'H19136.7°94.8°
C4'O4'C1'H2397.9°78.5°
C4'C3'O3'H19122.3°122.6°
C3'C4'C5'H18121.0°122.3°
C3'C4'C5'H1666.7°63.4°
C3'C4'C5'H17172.6°56.6°
C4'C3'O3'H2066.5°180.0°
C4'C3'C2'H2190.0°118.6°
O3'C3'C4'C5'139.5°98.6°
O3'C3'C4'H1818.6°23.7°
O3'C3'C2'H21155.9°122.8°
C4'C5'H16H17121.0°120.0°
C5'C4'C3'H1916.2°24.0°
H2C11C21H3170.3°177.7°
H3C21O21H453.3°60.2°
H3C21C31H5177.0°177.2°
H5C31O31H660.9°59.8°
H5C31C41H7178.2°177.2°
H7C41O41H860.6°60.2°
H7C41C51H9179.9°177.7°
H9C51C61H1076.2°55.1°
H10C61C71H1174.8°65.0°
H10C61C71H12163.6°175.0°
H10C61O6AH1460.9°180.0°
H11C71O71H1360.8°60.0°
H12C71O71H1360.8°60.0°
H16C5'C4'H1854.3°174.3°
H17C5'C4'H1866.4°65.7°
H18C4'C3'H19104.7°146.3°
H19C3'O3'H2055.8°57.4°
H19C3'C2'H2130.7°0.1°
H21C2'O2'H2259.3°57.4°
H21C2'C1'H23153.1°146.6°

223790

PDB entries from 2024-08-14

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