Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

YNB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.47Å1.47Å
N1C4sing1.48Å1.48Å
N1C21sing1.35Å1.40Å
C2C3sing1.53Å1.55Å
C3N6sing1.47Å1.48Å
C4C5sing1.51Å1.49Å
C5N6sing1.35Å1.39ÅAromatic
C5C9doub1.35Å1.30ÅAromatic
N6N7sing1.28Å1.36ÅAromatic
N7C8doub1.32Å1.37ÅAromatic
C8C9sing1.42Å1.74ÅAromatic
C8C19sing1.48Å1.48Å
N10C11sing1.47Å1.49Å
N10C13sing1.47Å1.50Å
N10C19sing1.35Å1.42Å
C11C12sing1.53Å1.55Å
C12C15sing1.50Å1.46Å
C13C14sing1.51Å1.50Å
C14C15doub1.36Å1.40ÅAromatic
C14N18sing1.33Å1.41ÅAromatic
C15N16sing1.34Å1.39ÅAromatic
N16N17sing1.29Å1.38ÅAromatic
N17N18doub1.29Å1.30ÅAromatic
C19O20doub1.22Å1.23Å
C21O22doub1.21Å1.22Å
C21O23sing1.35Å1.38Å
O23C24sing1.45Å1.43Å
C24C25sing1.51Å1.52Å
C25C26doub1.38Å1.40ÅAromatic
C25C30sing1.38Å1.40ÅAromatic
C26C27sing1.38Å1.38ÅAromatic
C26C36sing1.51Å1.49Å
C27C28doub1.39Å1.39ÅAromatic
C28C29sing1.39Å1.39ÅAromatic
C28O31sing1.36Å1.37Å
C29C30doub1.38Å1.40ÅAromatic
O31C32sing1.43Å1.39Å
C32F33sing1.40Å1.34Å
C32F34sing1.40Å1.32Å
C32F35sing1.40Å1.33Å
C11H44sing1.09Å1.10Å
C11H45sing1.09Å1.10Å
C13H49sing1.09Å1.10Å
C13H48sing1.09Å1.10Å
C24H52sing1.09Å1.10Å
C24H51sing1.09Å1.10Å
C27H53sing1.08Å1.08Å
C2H38sing1.09Å1.10Å
C2H37sing1.09Å1.10Å
C3H39sing1.09Å1.10Å
C3H40sing1.09Å1.10Å
C4H42sing1.09Å1.10Å
C4H41sing1.09Å1.10Å
C9H43sing1.08Å1.08Å
C12H46sing1.09Å1.10Å
C12H47sing1.09Å1.10Å
N16H50sing0.97Å1.00Å
C29H54sing1.08Å1.08Å
C30H55sing1.08Å1.08Å
C36H58sing1.09Å1.10Å
C36H56sing1.09Å1.10Å
C36H57sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C4116.2°117.8°
C2N1C21119.8°121.1°
N1C2C3110.1°109.2°
N1C2H38109.3°109.5°
N1C2H37109.3°109.5°
C4N1C21123.1°121.1°
N1C4C5111.3°107.0°
N1C4H42109.0°109.9°
N1C4H41109.0°110.0°
N1C21O22123.1°120.0°
N1C21O23116.0°120.0°
C2C3N6109.0°109.3°
C3C2H38109.3°109.5°
C3C2H37109.3°109.5°
C2C3H39109.6°109.5°
C2C3H40109.6°109.5°
C3N6C5123.7°124.3°
C3N6N7122.8°126.1°
N6C3H39109.6°109.5°
N6C3H40109.6°109.6°
C4C5N6122.2°124.5°
C4C5C9124.5°127.7°
C5C4H42109.0°110.0°
C5C4H41109.0°109.9°
N6C5C9112.9°107.9°
C5N6N7113.6°109.6°
C5C9C898.8°105.3°
C5C9H43130.6°127.4°
N6N7C8107.4°110.3°
N7C8C9103.8°107.0°
N7C8C19124.3°126.5°
C9C8C19127.1°126.5°
C8C9H43130.6°127.3°
C8C19N10119.3°120.0°
C8C19O20119.5°120.0°
C11N10C13115.3°118.4°
C11N10C19116.8°120.8°
N10C11C12112.0°109.2°
N10C11H44108.9°109.5°
N10C11H45108.9°109.5°
C13N10C19122.3°120.8°
N10C13C14110.5°107.2°
N10C13H49109.2°109.9°
N10C13H48109.2°110.0°
N10C19O20121.2°120.0°
C11C12C15104.5°108.8°
C12C11H44108.8°109.5°
C12C11H45108.8°109.5°
C11C12H46110.7°109.6°
C11C12H47110.7°109.6°
C12C15C14123.5°124.7°
C12C15N16130.8°129.1°
C15C12H46110.7°109.5°
C15C12H47110.7°109.6°
C13C14C15124.2°123.9°
C13C14N18128.4°129.3°
C14C13H49109.2°109.9°
C14C13H48109.2°109.9°
C15C14N18107.3°106.9°
C14C15N16105.7°106.3°
C14N18N17108.8°108.6°
C15N16N17108.4°108.1°
C15N16H50125.8°126.0°
N16N17N18109.8°110.3°
N17N16H50125.8°126.0°
O22C21O23121.0°120.0°
C21O23C24115.8°117.0°
O23C24C25111.0°109.5°
O23C24H52109.1°109.5°
O23C24H51109.1°109.5°
C24C25C26116.2°119.9°
C24C25C30124.5°119.9°
C25C24H52109.1°109.4°
C25C24H51109.1°109.5°
C26C25C30119.3°120.1°
C25C26C27120.5°120.1°
C25C26C36121.6°120.0°
C25C30C29120.8°120.1°
C25C30H55119.6°120.0°
C27C26C36118.0°119.9°
C26C27C28119.7°119.9°
C26C27H53120.1°120.0°
C26C36H58109.5°109.5°
C26C36H56109.5°109.5°
C26C36H57109.5°109.5°
C27C28C29121.7°119.9°
C27C28O31117.1°120.1°
C28C27H53120.1°120.0°
C29C28O31121.2°120.1°
C28C29C30118.0°119.9°
C28C29H54121.0°120.0°
C28O31C32122.8°117.0°
C30C29H54121.0°120.1°
C29C30H55119.6°120.0°
O31C32F33112.2°109.5°
O31C32F34105.9°109.5°
O31C32F35113.8°109.5°
F33C32F34110.1°109.5°
F33C32F35106.3°109.5°
F34C32F35108.5°109.4°
H44C11H45109.4°109.5°
H49C13H48109.5°109.8°
H52C24H51109.5°109.5°
H38C2H37109.5°109.5°
H39C3H40109.5°109.5°
H42C4H41109.5°110.0°
H46C12H47109.4°109.7°
H58C36H56109.5°109.5°
H58C36H57109.4°109.4°
H56C36H57109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C4C21169.4°179.8°
N1C2C3H38120.1°120.0°
N1C2C3H37120.1°119.9°
N1C2C3N649.5°46.6°
C2N1C4C540.5°42.7°
C2N1C21O22168.6°0.1°
C2N1C21O2312.3°180.0°
N1C2H38H37119.7°120.1°
N1C2C3H3970.5°166.5°
N1C2C3H40169.4°73.4°
C2N1C4H4279.8°162.1°
C2N1C4H41160.8°76.7°
C4N1C2C361.0°63.8°
N1C4C5H42120.3°119.3°
N1C4C5H41120.3°119.4°
N1C4C5N612.5°10.4°
N1C4C5C9159.7°169.6°
C4N1C21O220.5°179.7°
C4N1C21O23178.6°0.2°
C4N1C2H38178.9°56.2°
C4N1C2H3759.1°176.3°
N1C4H42H41119.2°121.2°
C21N1C2C3129.2°116.0°
C21N1C4C5150.1°137.1°
N1C21O22O23179.1°179.9°
N1C21O23C2477.9°179.9°
C21N1C2H389.1°124.0°
C21N1C2H37110.7°3.9°
C21N1C4H4289.7°17.7°
C21N1C4H4129.8°103.5°
C2C3N6H39119.9°119.9°
C2C3N6H40119.9°120.0°
C2C3N6C525.1°19.2°
C2C3N6N7154.8°161.1°
C3C2H38H37119.7°120.1°
C2C3H39H40120.2°120.1°
C3N6C5C47.0°0.7°
C3N6C5N7179.9°179.8°
C3N6C5C9166.0°179.3°
C3N6N7C8179.8°179.4°
N6C3C2H38169.6°73.4°
N6C3C2H3770.6°166.5°
N6C3H39H40120.2°120.1°
C4C5N6C9173.0°180.0°
C4C5N6N7173.0°179.5°
C4C5C9C8169.5°179.7°
C5C4H42H41119.1°121.2°
C4C5C9H4310.5°0.3°
C5N6N7C80.1°0.4°
N6C5C9C817.7°0.3°
C5N6C3H3994.8°139.1°
C5N6C3H40145.1°100.9°
N6C5C4H42107.8°129.7°
N6C5C4H41132.8°109.0°
N6C5C9H43162.3°179.8°
C9C5N6N714.0°0.4°
C5C9C8N717.3°0.1°
C5C9C8H43180.0°179.9°
C5C9C8C19173.3°179.8°
C9C5C4H4280.1°50.3°
C9C5C4H4139.4°71.0°
N6N7C8C910.0°0.2°
N6N7C8C19166.8°179.9°
N7N6C3H3985.3°41.2°
N7N6C3H4034.9°78.9°
N7C8C9C19155.9°179.9°
N7C8C19N1046.8°6.5°
N7C8C19O20133.3°173.5°
N7C8C9H43162.7°180.0°
C9C8C19N10104.6°173.4°
C9C8C19O2075.4°6.6°
C8C19N10C1142.5°176.6°
C8C19N10C13165.1°3.5°
C8C19N10O20179.9°179.9°
C19C8C9H436.7°0.1°
C11N10C13C19152.7°180.0°
N10C11C12H44120.4°119.9°
N10C11C12H45120.4°120.0°
N10C11C12C1558.7°45.1°
C11N10C13C1424.8°44.3°
C11N10C19O20137.4°3.5°
N10C11H44H45118.9°120.1°
C11N10C13H49145.0°163.7°
C11N10C13H4895.4°75.3°
N10C11C12H46177.9°164.9°
N10C11C12H4760.5°74.7°
C13N10C11C1259.6°64.3°
N10C13C14H49120.2°119.4°
N10C13C14H48120.2°119.6°
N10C13C14C154.8°11.4°
N10C13C14N18175.1°168.7°
C13N10C19O2015.0°176.5°
C13N10C11H4460.8°55.6°
C13N10C11H45180.0°175.7°
N10C13H49H48119.5°121.2°
C19N10C11C12146.1°115.7°
C19N10C13C14177.6°135.8°
C19N10C11H4493.5°124.4°
C19N10C11H4525.7°4.2°
C19N10C13H4962.3°16.3°
C19N10C13H4857.4°104.7°
C11C12C15H46119.2°119.8°
C11C12C15H47119.2°119.8°
C11C12C15C1430.7°17.8°
C11C12C15N16149.1°162.5°
C12C11H44H45118.8°120.1°
C11C12H46H47122.3°120.4°
C12C15C14C130.1°0.5°
C12C15C14N16179.8°179.8°
C12C15C14N18179.8°179.6°
C12C15N16N17179.8°179.6°
C15C12C11H4461.7°74.8°
C15C12C11H45179.1°165.1°
C15C12H46H47122.3°120.3°
C12C15N16H500.2°0.5°
C13C14C15N18179.9°179.9°
C13C14C15N16179.8°179.7°
C13C14N18N17179.9°179.8°
C14C13H49H48119.5°121.1°
C14C15N16N170.1°0.2°
C15C14N18N170.0°0.1°
C15C14C13H49115.4°130.8°
C15C14C13H48124.9°108.2°
C14C15C12H46149.9°137.6°
C14C15C12H4788.6°102.0°
C14C15N16H50180.0°179.8°
N18C14C15N160.0°0.2°
C14N18N17N160.0°0.0°
N18C14C13H4964.8°49.3°
N18C14C13H4854.9°71.7°
C15N16N17H50180.0°180.0°
C15N16N17N180.1°0.1°
N16C15C12H4629.8°42.7°
N16C15C12H4791.7°77.7°
N18N17N16H50180.0°179.9°
O22C21O23C24103.0°0.0°
C21O23C24C25176.5°180.0°
C21O23C24H5256.3°60.1°
C21O23C24H5163.3°60.0°
O23C24C25H52120.2°119.9°
O23C24C25H51120.2°120.0°
O23C24C25C26138.2°180.0°
O23C24C25C3041.9°0.2°
O23C24H52H51119.3°120.0°
C24C25C26C30179.9°179.8°
C24C25C26C27179.9°180.0°
C24C25C26C360.1°0.1°
C24C25C30C29179.9°179.7°
C25C24H52H51119.3°120.0°
C24C25C30H550.1°0.1°
C25C26C27C36179.8°180.0°
C25C26C27C280.4°0.0°
C26C25C30C290.0°0.5°
C26C25C24H52101.6°60.1°
C26C25C24H5118.0°60.0°
C25C26C27H53179.5°180.0°
C26C25C30H55180.0°179.8°
C25C26C36H5889.9°89.9°
C25C26C36H56150.1°150.0°
C25C26C36H5730.1°30.0°
C30C25C26C270.1°0.2°
C30C25C26C36180.0°179.8°
C25C30C29C280.1°0.5°
C25C30C29H55180.0°179.7°
C30C25C24H5278.4°119.7°
C30C25C24H51162.1°120.2°
C25C30C29H54179.9°179.8°
C26C27C28H53180.0°180.0°
C26C27C28C290.6°0.0°
C26C27C28O31179.4°180.0°
C27C26C36H5889.9°90.0°
C27C26C36H5630.1°30.0°
C27C26C36H57150.1°150.0°
C36C26C27C28179.7°180.0°
C36C26C27H530.3°0.0°
C26C36H58H56120.0°120.0°
C26C36H58H57120.0°120.0°
C26C36H56H57120.0°120.0°
C27C28C29O31179.9°180.0°
C27C28C29C300.4°0.3°
C27C28O31C32178.0°180.0°
C27C28C29H54179.6°180.0°
C28C29C30H54180.0°179.7°
C29C28O31C321.9°0.0°
C29C28C27H53179.4°180.0°
C28C29C30H55179.9°179.7°
O31C28C29C30179.5°179.7°
C28O31C32F33163.9°60.0°
C28O31C32F3475.9°180.0°
C28O31C32F3543.2°60.0°
O31C28C27H530.7°0.0°
O31C28C29H540.5°0.0°
O31C32F33F34117.6°120.0°
O31C32F33F35125.0°120.0°
O31C32F34F35122.6°120.0°
F33C32F34F35115.9°120.0°
H44C11C12H4657.6°45.0°
H44C11C12H47179.1°165.4°
H45C11C12H4661.7°75.1°
H45C11C12H4759.9°45.3°
H38C2C3H3949.7°46.5°
H38C2C3H4070.5°166.6°
H37C2C3H39169.5°73.6°
H37C2C3H4049.3°46.5°
H54C29C30H550.1°0.0°
H58C36H56H57120.0°119.9°

251174

PDB entries from 2026-03-25

PDB statisticsPDBj update infoContact PDBjnumon