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SummaryGeometryRelated PDB entries

YN7

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C43C44sing1.54Å1.32Å
C43C42sing1.54Å1.66Å
C44N01sing1.47Å1.54Å
C42C41sing1.52Å1.32Å
N01C41sing1.36Å1.49Å
N01C02sing1.36Å1.39Å
C41N45doub1.31Å1.40Å
O03C02doub1.22Å1.20Å
C02C04sing1.41Å1.53Å
N45C40sing1.34Å1.46Å
O15C14doub1.22Å1.18Å
C31N30sing1.47Å1.32Å
C28C27sing1.53Å1.57Å
C04C40doub1.40Å1.45ÅAromatic
C04C05sing1.47Å1.41ÅAromatic
C29N30sing1.47Å1.38Å
C29C27sing1.53Å1.50Å
C40N19sing1.36Å1.30ÅAromatic
N30C32sing1.47Å1.37Å
C14N16sing1.35Å1.39Å
C14C13sing1.47Å1.53Å
C27N26sing1.47Å1.46Å
C17C13doub1.40Å1.39ÅAromatic
C17C06sing1.39Å1.39ÅAromatic
C05C06sing1.48Å1.41Å
C05C18doub1.36Å1.41ÅAromatic
N19C20sing1.46Å1.46Å
N19C18sing1.37Å1.36ÅAromatic
C13C11sing1.40Å1.40ÅAromatic
C32C33sing1.53Å1.48Å
C06C07doub1.40Å1.41ÅAromatic
C20C21sing1.51Å1.48Å
O39C21doub1.21Å1.20Å
N26C33sing1.47Å1.45Å
N26C25sing1.39Å1.45Å
C21N22sing1.35Å1.42Å
C24C25doub1.39Å1.39ÅAromatic
C24C23sing1.39Å1.40ÅAromatic
C11O12sing1.36Å1.41Å
C11C09doub1.39Å1.39ÅAromatic
C25N34sing1.33Å1.32ÅAromatic
C07C09sing1.38Å1.36ÅAromatic
C07F08sing1.35Å1.38Å
N22C23sing1.40Å1.45Å
C23C37doub1.40Å1.37ÅAromatic
C09F10sing1.35Å1.36Å
N34C35doub1.32Å1.32ÅAromatic
C37C35sing1.38Å1.39ÅAromatic
C37CL38sing1.74Å1.76Å
C35F36sing1.35Å1.35Å
C17H171sing1.08Å1.08Å
C18H181sing1.08Å1.08Å
C20H202sing1.09Å1.10Å
C20H201sing1.09Å1.10Å
C24H241sing1.08Å1.08Å
C27H271sing1.09Å1.10Å
C28H283sing1.09Å1.10Å
C28H281sing1.09Å1.10Å
C28H282sing1.09Å1.10Å
C29H292sing1.09Å1.10Å
C29H291sing1.09Å1.10Å
C31H312sing1.09Å1.10Å
C31H311sing1.09Å1.10Å
C31H313sing1.09Å1.10Å
C32H322sing1.09Å1.10Å
C32H321sing1.09Å1.10Å
C33H332sing1.09Å1.10Å
C33H331sing1.09Å1.10Å
C42H421sing1.09Å1.10Å
C42H422sing1.09Å1.10Å
C43H431sing1.09Å1.10Å
C43H432sing1.09Å1.10Å
C44H442sing1.09Å1.10Å
C44H441sing1.09Å1.10Å
N16H161sing0.97Å1.00Å
N16H162sing0.97Å1.00Å
N22H221sing0.97Å1.00Å
O12H121sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C44C43C42107.8°101.8°
C43C44N01106.9°105.6°
C44C43H431109.9°110.9°
C44C43H432109.9°110.9°
C43C44H442110.1°110.3°
C43C44H441110.1°110.2°
C43C42C41104.2°104.4°
C43C42H421110.8°110.5°
C43C42H422110.8°110.6°
C42C43H431109.9°111.0°
C42C43H432109.9°110.9°
C44N01C41106.2°111.0°
C44N01C02125.7°128.9°
N01C44H442110.1°110.2°
N01C44H441110.1°110.2°
C42C41N01111.8°109.6°
C42C41N45129.8°128.7°
C41C42H421110.8°110.5°
C41C42H422110.8°110.4°
C41N01C02128.1°120.1°
N01C41N45118.4°121.7°
N01C02O03122.1°120.7°
N01C02C04112.7°118.6°
C41N45C40117.3°122.0°
O03C02C04125.2°120.7°
C02C04C40119.0°118.8°
C02C04C05136.0°134.9°
N45C40C04124.3°118.8°
N45C40N19126.3°133.7°
O15C14N16121.6°120.0°
O15C14C13122.0°120.0°
C31N30C29114.3°111.0°
C31N30C32113.0°111.0°
N30C31H312109.5°109.4°
N30C31H311109.5°109.5°
N30C31H313109.4°109.5°
C28C27C29109.3°109.5°
C28C27N26113.7°109.4°
C28C27H271106.4°109.5°
C27C28H283109.5°109.5°
C27C28H281109.5°109.4°
C27C28H282109.4°109.4°
C40C04C05104.9°106.3°
C04C40N19109.4°107.5°
C04C05C06132.6°126.8°
C04C05C18106.4°106.4°
N30C29C27114.4°109.4°
C29N30C32118.9°110.8°
N30C29H292108.3°109.5°
N30C29H291108.2°109.5°
C29C27N26112.4°109.3°
C29C27H271107.1°109.5°
C27C29H292108.2°109.5°
C27C29H291108.2°109.4°
C40N19C20124.3°124.8°
C40N19C18110.7°110.4°
N30C32C33116.3°109.4°
N30C32H322107.7°109.5°
N30C32H321107.7°109.5°
N16C14C13116.1°120.0°
C14N16H161120.0°120.0°
C14N16H162120.0°120.0°
C14C13C17117.4°120.1°
C14C13C11122.1°120.1°
C27N26C33119.1°110.9°
C27N26C25120.5°111.0°
N26C27H271107.6°109.5°
C13C17C06120.7°119.8°
C17C13C11120.5°119.8°
C13C17H171119.6°120.0°
C17C06C05122.0°120.0°
C17C06C07117.7°120.1°
C06C17H171119.6°120.1°
C06C05C18120.9°126.8°
C05C06C07120.3°120.0°
C05C18N19108.6°109.4°
C05C18H181125.7°125.3°
C20N19C18125.1°124.8°
N19C20C21113.2°109.5°
N19C20H202108.5°109.5°
N19C20H201108.6°109.5°
N19C18H181125.7°125.3°
C13C11O12124.1°120.0°
C13C11C09119.1°120.0°
C32C33N26116.6°109.4°
C33C32H322107.7°109.5°
C33C32H321107.8°109.5°
C32C33H332107.6°109.5°
C32C33H331107.7°109.5°
C06C07C09121.9°120.2°
C06C07F08122.3°119.9°
C20C21O39125.5°120.0°
C20C21N22108.6°120.0°
C21C20H202108.5°109.5°
C21C20H201108.6°109.4°
O39C21N22125.8°120.0°
C33N26C25118.2°111.1°
N26C33H332107.7°109.4°
N26C33H331107.6°109.5°
N26C25C24118.3°119.6°
N26C25N34118.1°119.7°
C21N22C23121.9°120.0°
C21N22H221119.0°120.0°
C25C24C23116.4°119.1°
C24C25N34123.6°120.7°
C25C24H241121.8°120.5°
C24C23N22119.3°120.8°
C24C23C37120.8°118.3°
C23C24H241121.8°120.4°
O12C11C09116.8°120.0°
C11O12H121109.5°114.0°
C11C09C07120.1°120.2°
C11C09F10120.1°119.9°
C25N34C35118.6°121.8°
C09C07F08115.8°119.9°
C07C09F10119.8°119.9°
N22C23C37119.6°120.8°
C23N22H221119.0°120.0°
C23C37C35116.8°119.2°
C23C37CL38121.0°120.4°
N34C35C37123.8°120.9°
N34C35F36117.6°119.6°
C35C37CL38122.2°120.4°
C37C35F36118.6°119.6°
H202C20H201109.4°109.5°
H283C28H281109.5°109.5°
H283C28H282109.5°109.5°
H281C28H282109.5°109.4°
H292C29H291109.5°109.5°
H312C31H311109.4°109.5°
H312C31H313109.5°109.4°
H311C31H313109.5°109.5°
H322C32H321109.5°109.5°
H332C33H331109.5°109.5°
H421C42H422109.4°110.4°
H431C43H432109.4°110.9°
H442C44H441109.4°110.3°
H161N16H162120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C44C43C42H431119.8°118.1°
C44C43C42H432119.8°118.1°
C43C44N01H442119.6°119.0°
C43C44N01H441119.6°119.0°
C44C43C42C4117.3°25.7°
C43C44N01C4112.9°17.5°
C43C44N01C02168.1°162.6°
C44C43C42H421136.4°144.4°
C44C43C42H422101.9°93.1°
C44C43H431H432120.8°123.8°
C43C44H442H441121.2°121.9°
C42C43C44N0117.5°26.3°
C43C42C41H421119.2°118.7°
C43C42C41H422119.2°118.8°
C43C42C41N018.5°16.8°
C43C42C41N45169.7°163.2°
C43C42H421H422122.4°122.6°
C42C43H431H432120.8°123.8°
C42C43C44H442102.1°145.3°
C42C43C44H441137.2°92.7°
C44N01C41C421.2°0.4°
C44N01C41C02179.0°179.9°
C44N01C41N45179.6°179.7°
C44N01C02O030.0°0.0°
C44N01C02C04178.6°179.8°
N01C44C43H431102.2°91.9°
N01C44C43H432137.3°144.3°
N01C44H442H441121.2°121.9°
C42C41N01N45178.4°179.9°
C42C41N01C02179.8°179.7°
C42C41N45C40177.2°179.7°
C41C42H421H422122.5°122.5°
C41C42C43H431102.5°92.4°
C41C42C43H432137.0°143.8°
C41N01C02O03178.8°179.9°
C41N01C02C042.6°0.2°
N01C41N45C400.8°0.2°
N01C41C42H421127.6°135.5°
N01C41C42H422110.7°102.1°
C41N01C44H442106.7°136.5°
C41N01C44H441132.6°101.5°
C02N01C41N451.4°0.3°
N01C02O03C04178.4°179.7°
N01C02C04C401.6°0.0°
N01C02C04C05178.9°179.9°
C02N01C44H44272.4°43.6°
C02N01C44H44148.4°78.4°
C41N45C40C041.6°0.1°
C41N45C40N19179.4°180.0°
N45C41C42H42150.6°44.4°
N45C41C42H42271.1°78.0°
O03C02C04C40179.8°179.8°
O03C02C04C050.3°0.3°
C02C04C40N450.3°0.0°
C02C04C40C05179.6°179.9°
C02C04C40N19178.4°180.0°
C02C04C05C061.2°0.1°
C02C04C05C18177.6°180.0°
N45C40C04N19178.1°180.0°
N45C40C04C05179.3°179.9°
N45C40N19C200.4°0.0°
N45C40N19C18178.0°179.9°
O15C14N16C13173.6°179.9°
O15C14C13C172.9°179.9°
O15C14C13C11174.8°0.0°
O15C14N16H1610.0°180.0°
O15C14N16H162180.0°0.1°
C31N30C29C32137.6°123.9°
C31N30C29C27172.6°176.8°
C31N30C32C33178.7°176.8°
C31N30C29H29251.9°63.2°
C31N30C29H29166.6°56.9°
N30C31H312H311120.0°120.0°
N30C31H312H313120.0°120.0°
N30C31H311H313120.0°120.0°
C31N30C32H32257.7°56.9°
C31N30C32H32160.3°63.2°
C28C27C29N3084.4°61.5°
C28C27C29N26127.3°119.9°
C28C27C29H271114.8°120.1°
C28C27N26H271117.5°120.1°
C28C27N26C3393.9°60.7°
C28C27N26C2569.0°63.3°
C27C28H283H281120.0°120.0°
C27C28H283H282120.0°120.0°
C27C28H281H282120.0°119.9°
C28C27C29H29236.3°178.5°
C28C27C29H291154.9°58.5°
C40C04C05C06178.3°180.0°
C40C04C05C181.9°0.1°
C04C40N19C20178.4°179.9°
C04C40N19C180.1°0.1°
C05C04C40N191.2°0.1°
C04C05C06C1731.1°115.3°
C04C05C06C18176.0°179.9°
C04C05C18N192.0°0.1°
C04C05C06C07151.1°64.9°
C04C05C18H181178.0°180.0°
N30C29C27H292120.7°120.0°
N30C29C27H291120.7°120.0°
N30C29C27N2642.8°58.4°
C29N30C32C3340.5°59.3°
N30C29C27H271160.7°178.4°
N30C29H292H291117.8°120.0°
C29N30C31H312180.0°60.0°
C29N30C31H31160.0°180.0°
C29N30C31H31360.0°59.9°
C29N30C32H32280.4°179.3°
C29N30C32H321161.5°60.7°
C27C29N30C3249.7°59.3°
C29C27N26H271117.6°120.0°
C29C27N26C3331.0°59.3°
C29C27N26C25166.2°176.8°
C29C27C28H283180.0°59.8°
C29C27C28H28160.0°60.2°
C29C27C28H28260.0°179.9°
C27C29H292H291117.7°120.0°
C40N19C18C051.3°0.0°
C40N19C20C18178.1°180.0°
C40N19C20C2180.8°85.0°
C40N19C18H181178.7°179.9°
C40N19C20H20239.7°35.1°
C40N19C20H201158.6°155.1°
N30C32C33H322121.0°119.9°
N30C32C33H321121.0°120.0°
N30C32C33N2625.8°58.4°
C32N30C29H292170.4°60.7°
C32N30C29H29171.0°179.3°
C32N30C31H31239.9°176.2°
C32N30C31H31180.1°56.2°
C32N30C31H313159.9°63.8°
N30C32H322H321116.9°120.0°
N30C32C33H332146.9°178.3°
N30C32C33H33195.2°61.6°
N16C14C13C17176.5°0.0°
N16C14C13C111.2°180.0°
C14N16H161H162180.0°180.0°
C14C13C17C11177.7°180.0°
C14C13C17C06178.3°180.0°
C14C13C11O123.9°0.0°
C14C13C11C09178.5°179.8°
C14C13C17H1711.7°0.0°
C13C14N16H161173.6°0.0°
C13C14N16H1626.4°180.0°
C27N26C33C3223.1°59.3°
C27N26C33C25163.3°123.9°
C27N26C25C2410.6°180.0°
C27N26C25N34167.8°0.0°
N26C27C28H28353.5°60.0°
N26C27C28H28166.5°180.0°
N26C27C28H282173.5°60.1°
N26C27C29H292163.6°61.6°
N26C27C29H29177.9°178.4°
C27N26C33H332144.1°179.3°
C27N26C33H33198.0°60.7°
C13C17C06H171180.0°180.0°
C13C17C06C05177.6°180.0°
C13C17C06C070.2°0.3°
C17C13C11O12178.4°180.0°
C17C13C11C090.8°0.2°
C17C06C05C07177.8°179.7°
C17C06C05C18144.9°64.8°
C06C17C13C110.5°0.0°
C17C06C07C090.3°0.3°
C17C06C07F08178.4°179.7°
C06C05C18N19178.9°180.0°
C05C06C07C09177.6°180.0°
C05C06C07F083.7°0.0°
C05C06C17H1712.4°0.0°
C06C05C18H1811.1°0.1°
C05C18N19C20179.7°180.0°
C05C18N19H181180.0°179.9°
C18C05C06C0732.9°114.9°
N19C20C21H202120.6°120.1°
N19C20C21H201120.6°120.0°
N19C20C21O3918.3°0.0°
N19C20C21N22164.3°180.0°
C20N19C18H1810.3°0.1°
N19C20H202H201118.3°120.0°
C18N19C20C21101.0°95.0°
C18N19C20H202138.4°145.0°
C18N19C20H20119.5°25.0°
C13C11O12C09177.6°179.8°
C13C11C09C070.9°0.2°
C13C11C09F10178.6°179.7°
C11C13C17H171179.5°180.0°
C13C11O12H121180.0°89.8°
C32C33N26H332121.0°120.0°
C32C33N26H331121.0°120.0°
C32C33N26C25173.7°176.8°
C33C32H322H321116.9°120.1°
C32C33H332H331116.7°120.1°
C06C07C09C110.6°0.1°
C06C07C09F08178.8°180.0°
C06C07C09F10178.9°180.0°
C07C06C17H171179.8°179.7°
C20C21O39N22176.9°180.0°
C20C21N22C23172.4°174.4°
C21C20H202H201118.3°119.9°
C20C21N22H2217.6°5.7°
O39C21N22C234.9°5.6°
O39C21C20H202102.2°120.0°
O39C21C20H201138.9°120.0°
O39C21N22H221175.1°174.3°
C33N26C25C24173.7°56.2°
C33N26C25N344.8°123.8°
C33N26C27H271148.5°179.3°
N26C33C32H32295.1°178.4°
N26C33C32H321146.8°61.5°
N26C33H332H331116.7°120.0°
N26C25C24N34178.3°180.0°
N26C25C24C23179.3°179.9°
N26C25N34C35179.5°179.9°
N26C25C24H2410.7°0.0°
C25N26C27H27148.6°56.8°
C25N26C33H33252.6°56.8°
C25N26C33H33165.3°63.2°
C21N22C23C2440.5°24.5°
C21N22C23H221180.0°179.9°
C21N22C23C37146.4°155.2°
N22C21C20H20275.1°60.0°
N22C21C20H20143.8°60.0°
C25C24C23H241180.0°180.0°
C25C24C23N22176.5°179.7°
C25C24C23C373.5°0.0°
C24C25N34C351.1°0.0°
C23C24C25N342.3°0.0°
C24C23N22C37173.1°179.7°
C24C23C37C353.5°0.0°
C24C23C37CL38175.5°179.9°
C24C23N22H221139.5°155.5°
O12C11C09C07178.6°180.0°
O12C11C09F100.9°0.0°
C11C09C07F10179.5°179.9°
C11C09C07F08178.2°179.9°
C09C11O12H1212.4°90.0°
C25N34C35C371.1°0.0°
C25N34C35F36179.7°180.0°
N34C25C24H241177.6°180.0°
F08C07C09F102.3°0.0°
N22C23C37C35176.5°179.7°
N22C23C37CL382.6°0.3°
N22C23C24H2413.5°0.3°
C23C37C35N342.3°0.0°
C23C37C35CL38179.1°180.0°
C23C37C35F36179.1°180.0°
C37C23C24H241176.4°180.0°
C37C23N22H22133.6°24.8°
N34C35C37F36178.6°180.0°
N34C35C37CL38176.7°179.9°
CL38C37C35F361.8°0.0°
H271C27C28H28364.7°180.0°
H271C27C28H281175.3°59.9°
H271C27C28H28255.3°60.0°
H271C27C29H29278.5°58.3°
H271C27C29H29140.0°61.7°
H283C28H281H282120.0°120.1°
H312C31H311H313120.0°120.0°
H322C32C33H33225.9°61.7°
H322C32C33H331143.8°58.4°
H321C32C33H33292.1°58.4°
H321C32C33H33125.8°178.4°
H421C42C43H43116.7°26.3°
H421C42C43H432103.8°97.5°
H422C42C43H431138.3°148.8°
H422C42C43H43217.8°25.0°
H431C43C44H442138.1°27.1°
H431C43C44H44117.4°149.1°
H432C43C44H44217.6°96.7°
H432C43C44H441103.1°25.3°

251174

PDB entries from 2026-03-25

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