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YN5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C27C28sing1.53Å1.45Å
C27C26sing1.50Å1.58Å
C01C02sing1.51Å1.51Å
O30C26doub1.21Å1.18Å
C28C29sing1.53Å1.45Å
C26N25sing1.33Å1.52Å
C29C24sing1.53Å1.47Å
C02O07sing1.34Å1.32ÅAromatic
C02C03doub1.37Å1.39ÅAromatic
N41C10sing1.36Å1.37ÅAromatic
N41C23doub1.30Å1.34ÅAromatic
O07N06sing1.21Å1.37ÅAromatic
N25C24sing1.46Å1.56Å
N25C31sing1.40Å1.47Å
C24C23sing1.51Å1.53Å
C09C10doub1.40Å1.44ÅAromatic
C09C08sing1.39Å1.40ÅAromatic
C10C11sing1.41Å1.37ÅAromatic
C36C31doub1.39Å1.40ÅAromatic
C36C35sing1.38Å1.41ÅAromatic
C23N14sing1.36Å1.34ÅAromatic
C31C32sing1.39Å1.40ÅAromatic
C03C08sing1.48Å1.57Å
C03C04sing1.42Å1.42ÅAromatic
N06C04doub1.30Å1.34ÅAromatic
C08C13doub1.40Å1.41ÅAromatic
C35C34doub1.39Å1.43ÅAromatic
C04C05sing1.51Å1.53Å
N14C11sing1.38Å1.38ÅAromatic
N14C15sing1.46Å1.48Å
C11C12doub1.39Å1.43ÅAromatic
C32C33doub1.39Å1.44ÅAromatic
C13C12sing1.38Å1.41ÅAromatic
C34C33sing1.39Å1.36ÅAromatic
C34O37sing1.36Å1.44Å
C15C20sing1.53Å1.53Å
C15C16sing1.53Å1.53Å
C33O40sing1.36Å1.40Å
C20C19sing1.53Å1.53Å
O37C38sing1.43Å1.43Å
C16C17sing1.53Å1.53Å
O40C39sing1.43Å1.39Å
C19C18sing1.53Å1.53Å
C38C39sing1.53Å1.53Å
C17C18sing1.53Å1.52Å
C18O21sing1.43Å1.42Å
O21C22sing1.43Å1.41Å
C13H1sing1.08Å1.08Å
C15H2sing1.09Å1.10Å
C17H3sing1.09Å1.10Å
C17H4sing1.09Å1.10Å
C20H5sing1.09Å1.10Å
C20H6sing1.09Å1.10Å
C22H7sing1.09Å1.10Å
C22H8sing1.09Å1.10Å
C22H9sing1.09Å1.10Å
C24H10sing1.09Å1.10Å
C28H11sing1.09Å1.10Å
C28H12sing1.09Å1.10Å
C01H13sing1.09Å1.10Å
C01H14sing1.09Å1.10Å
C01H15sing1.09Å1.10Å
C05H16sing1.09Å1.10Å
C05H17sing1.09Å1.10Å
C05H18sing1.09Å1.10Å
C09H19sing1.08Å1.08Å
C12H20sing1.08Å1.08Å
C16H21sing1.09Å1.10Å
C16H22sing1.09Å1.10Å
C18H23sing1.09Å1.10Å
C19H24sing1.09Å1.10Å
C19H25sing1.09Å1.10Å
C27H26sing1.09Å1.10Å
C27H27sing1.09Å1.10Å
C29H28sing1.09Å1.10Å
C29H29sing1.09Å1.10Å
C32H30sing1.08Å1.08Å
C35H31sing1.08Å1.08Å
C36H32sing1.08Å1.08Å
C38H33sing1.09Å1.10Å
C38H34sing1.09Å1.10Å
C39H35sing1.09Å1.10Å
C39H36sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C28C27C26114.3°109.9°
C27C28C29109.8°108.5°
C27C28H11109.4°109.8°
C27C28H12109.4°109.6°
C28C27H26108.2°109.4°
C28C27H27108.3°109.4°
C27C26O30122.5°118.2°
C27C26N25115.8°123.5°
C26C27H26108.2°109.4°
C26C27H27108.3°109.4°
C01C02O07123.9°126.9°
C01C02C03129.0°126.9°
C02C01H13109.5°109.5°
C02C01H14109.5°109.4°
C02C01H15109.5°109.5°
O30C26N25121.7°118.3°
C28C29C24110.2°108.7°
C29C28H11109.4°109.7°
C29C28H12109.4°109.7°
C28C29H28109.3°109.6°
C28C29H29109.3°109.6°
C26N25C24117.6°124.1°
C26N25C31123.5°117.9°
C29C24N25114.9°110.3°
C29C24C23109.1°109.3°
C29C24H10108.0°109.4°
C24C29H28109.3°109.6°
C24C29H29109.3°109.6°
O07C02C03107.1°106.3°
C02O07N06110.9°111.8°
C02C03C08127.6°128.2°
C02C03C04107.2°103.7°
C10N41C23109.5°109.7°
N41C10C09132.5°133.5°
N41C10C11106.4°106.9°
N41C23C24126.8°124.9°
N41C23N14108.1°110.1°
O07N06C04108.1°111.9°
C24N25C31118.9°118.0°
N25C24C23110.3°109.3°
N25C24H10107.0°109.3°
N25C31C36120.8°120.1°
N25C31C32117.8°120.0°
C24C23N14125.1°124.9°
C23C24H10107.3°109.3°
C10C09C08119.4°119.7°
C09C10C11121.1°119.6°
C10C09H19120.3°120.2°
C09C08C03120.1°119.8°
C09C08C13119.8°120.3°
C08C09H19120.3°120.2°
C10C11N14107.1°106.0°
C10C11C12119.5°120.1°
C31C36C35119.1°120.1°
C36C31C32121.4°119.9°
C31C36H32120.4°119.9°
C36C35C34119.6°120.2°
C36C35H31120.2°120.0°
C35C36H32120.4°120.0°
C23N14C11108.9°107.3°
C23N14C15122.5°126.4°
C31C32C33119.2°120.0°
C31C32H30120.4°120.0°
C08C03C04125.2°128.2°
C03C08C13120.1°119.9°
C03C04N06106.7°106.3°
C03C04C05129.2°126.9°
N06C04C05124.1°126.8°
C08C13C12120.5°120.3°
C08C13H1119.7°119.8°
C35C34C33120.8°119.9°
C35C34O37117.8°119.4°
C34C35H31120.2°119.9°
C04C05H16109.5°109.5°
C04C05H17109.5°109.5°
C04C05H18109.5°109.5°
C11N14C15128.6°126.3°
N14C11C12133.4°133.9°
N14C15C20113.0°109.5°
N14C15C16105.3°109.5°
N14C15H2108.2°109.4°
C11C12C13119.7°120.0°
C11C12H20120.2°120.0°
C32C33C34119.9°119.9°
C32C33O40118.7°119.3°
C33C32H30120.4°120.0°
C12C13H1119.7°119.8°
C13C12H20120.2°120.0°
C33C34O37121.4°120.7°
C34C33O40121.4°120.8°
C34O37C38116.6°116.8°
C20C15C16114.9°109.5°
C15C20C19112.3°109.5°
C20C15H2107.6°109.5°
C15C20H5108.7°109.5°
C15C20H6108.8°109.4°
C15C16C17112.2°109.5°
C16C15H2107.6°109.5°
C15C16H21108.8°109.5°
C15C16H22108.8°109.5°
C33O40C39113.5°116.7°
C20C19C18113.4°109.5°
C19C20H5108.8°109.5°
C19C20H6108.7°109.5°
C20C19H24108.5°109.5°
C20C19H25108.5°109.5°
O37C38C39114.4°108.2°
O37C38H33108.2°109.7°
O37C38H34108.3°109.8°
C16C17C18110.8°109.5°
C16C17H3109.1°109.4°
C16C17H4109.1°109.5°
C17C16H21108.8°109.5°
C17C16H22108.8°109.4°
O40C39C38113.3°108.3°
O40C39H35108.5°109.7°
O40C39H36108.5°109.8°
C19C18C17111.5°109.5°
C19C18O21109.9°109.4°
C19C18H23108.2°109.5°
C18C19H24108.5°109.5°
C18C19H25108.5°109.5°
C39C38H33108.2°109.7°
C39C38H34108.2°109.7°
C38C39H35108.5°109.7°
C38C39H36108.5°109.7°
C17C18O21109.0°109.5°
C18C17H3109.2°109.5°
C18C17H4109.2°109.5°
C17C18H23108.4°109.5°
C18O21C22114.0°114.0°
O21C18H23109.8°109.5°
O21C22H7109.5°109.4°
O21C22H8109.5°109.5°
O21C22H9109.5°109.4°
H3C17H4109.5°109.4°
H5C20H6109.5°109.4°
H7C22H8109.4°109.5°
H7C22H9109.4°109.5°
H8C22H9109.5°109.5°
H11C28H12109.4°109.6°
H13C01H14109.5°109.5°
H13C01H15109.4°109.5°
H14C01H15109.5°109.5°
H16C05H17109.4°109.5°
H16C05H18109.5°109.5°
H17C05H18109.5°109.5°
H21C16H22109.4°109.5°
H24C19H25109.5°109.5°
H26C27H27109.5°109.3°
H28C29H29109.5°109.8°
H33C38H34109.5°109.7°
H35C39H36109.5°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C28C27C26H26120.7°120.1°
C28C27C26H27120.7°120.1°
C28C27C26O30159.5°162.5°
C27C28C29H11120.1°119.9°
C27C28C29H12120.1°119.7°
C28C27C26N2521.5°17.5°
C27C28C29C2471.2°67.7°
C27C28H11H12119.8°120.4°
C28C27H26H27117.8°119.8°
C27C28C29H28168.7°52.1°
C27C28C29H2948.9°172.6°
C27C26O30N25179.0°180.0°
C26C27C28C2956.1°48.9°
C27C26N25C241.6°2.3°
C27C26N25C31179.2°177.8°
C26C27C28H1164.0°70.9°
C26C27C28H12176.1°168.6°
C26C27H26H27117.8°119.8°
C01C02O07C03178.8°179.8°
C01C02O07N06180.0°179.8°
C01C02C03C080.9°0.0°
C01C02C03C04179.6°180.0°
C02C01H13H14120.0°120.0°
C02C01H13H15120.0°120.0°
C02C01H14H15120.0°120.0°
O30C26N25C24179.4°177.8°
O30C26N25C311.8°2.1°
O30C26C27H2679.9°42.4°
O30C26C27H2738.7°77.3°
C28C29C24H28120.1°119.8°
C28C29C24H29120.1°119.7°
C28C29C24N2549.5°50.9°
C28C29C24C23173.9°171.1°
C28C29C24H1069.8°69.4°
C29C28H11H12119.8°120.5°
C29C28C27H2664.6°169.0°
C29C28C27H27176.8°71.3°
C28C29H28H29119.6°120.4°
C26N25C24C2915.6°19.3°
C26N25C24C31177.7°179.9°
C26N25C24C23139.4°139.4°
C26N25C31C3688.8°112.4°
C26N25C31C3292.8°67.3°
C26N25C24H10104.2°101.0°
N25C26C27H2699.2°137.7°
N25C26C27H27142.3°102.6°
C29C24C23N4159.2°75.7°
C29C24N25C23123.8°120.2°
C29C24N25H10119.8°120.3°
C29C24N25C31166.7°160.8°
C29C24C23H10116.8°119.6°
C29C24C23N14118.4°104.6°
C24C29C28H1148.9°52.2°
C24C29C28H12168.7°172.6°
C24C29H28H29119.6°120.4°
O07C02C03C08179.6°179.8°
O07C02C03C040.9°0.2°
C02O07N06C041.1°0.4°
O07C02C01H130.0°0.0°
O07C02C01H14120.0°120.0°
O07C02C01H15120.0°120.0°
C03C02O07N061.2°0.4°
C02C03C08C0938.5°115.0°
C02C03C08C04179.4°180.0°
C02C03C04N060.3°0.0°
C02C03C08C13140.4°65.0°
C02C03C04C05179.6°180.0°
C03C02C01H13178.5°179.7°
C03C02C01H1458.5°59.7°
C03C02C01H1561.5°60.2°
C10N41C23C24179.2°179.8°
N41C10C09C11179.8°179.7°
N41C10C09C08180.0°179.7°
C10N41C23N141.2°0.4°
N41C10C11N140.1°0.3°
N41C10C11C12179.6°179.8°
N41C10C09H190.0°0.4°
N41C23C24N2567.9°45.1°
N41C23C24N14177.6°179.7°
C23N41C10C09179.5°179.9°
C23N41C10C110.7°0.4°
N41C23N14C111.3°0.2°
N41C23N14C15178.8°180.0°
N41C23C24H10175.9°164.7°
O07N06C04C030.4°0.2°
O07N06C04C05179.6°179.7°
N25C24C23H10116.2°119.6°
C24N25C31C3693.6°67.5°
N25C24C23N14114.5°134.6°
C24N25C31C3284.8°112.8°
N25C24C29H28169.6°68.9°
N25C24C29H2970.6°170.6°
C31N25C24C2342.9°40.7°
N25C31C36C32178.3°179.7°
N25C31C36C35178.8°179.7°
N25C31C32C33179.1°179.7°
C31N25C24H1073.5°78.9°
N25C31C32H300.9°0.3°
N25C31C36H321.2°0.3°
C24C23N14C11179.3°180.0°
C24C23N14C153.2°0.2°
C23C24C29H2866.0°51.3°
C23C24C29H2953.8°69.2°
C10C09C08H19180.0°180.0°
C10C09C08C03180.0°180.0°
C10C09C08C131.1°0.0°
C09C10C11N14179.7°180.0°
C09C10C11C120.3°0.0°
C08C09C10C110.2°0.0°
C09C08C03C13178.9°180.0°
C09C08C03C04140.9°65.0°
C09C08C13C121.5°0.0°
C09C08C13H1178.5°180.0°
C10C11N14C230.9°0.0°
C10C11N14C12179.4°180.0°
C10C11N14C15178.2°179.8°
C10C11C12C130.1°0.0°
C11C10C09H19179.8°180.0°
C10C11C12H20179.9°180.0°
C31C36C35H32180.0°179.9°
C31C36C35C340.2°0.0°
C36C31C32C330.7°0.0°
C36C31C32H30179.3°179.9°
C31C36C35H31179.8°179.9°
C35C36C31C320.5°0.1°
C36C35C34H31180.0°179.9°
C36C35C34C330.0°0.1°
C36C35C34O37179.8°179.8°
C23N14C11C15177.3°179.8°
C23N14C11C12179.8°180.0°
C23N14C15C20123.7°119.8°
C23N14C15C16110.2°120.2°
C23N14C15H24.6°0.1°
N14C23C24H101.7°15.0°
C31C32C33H30180.0°180.0°
C31C32C33C340.6°0.1°
C31C32C33O40179.8°179.8°
C32C31C36H32179.5°180.0°
C08C03C04N06179.8°180.0°
C08C03C04C050.1°0.0°
C03C08C13C12179.6°180.0°
C03C08C13H10.4°0.0°
C03C08C09H190.0°0.0°
C03C04N06C05179.9°180.0°
C04C03C08C1340.2°115.0°
C03C04C05H16179.9°90.0°
C03C04C05H1759.9°150.0°
C03C04C05H1860.1°30.0°
N06C04C05H160.0°89.9°
N06C04C05H17120.0°30.0°
N06C04C05H18120.0°150.0°
C08C13C12C111.0°0.0°
C08C13C12H1180.0°180.0°
C13C08C09H19178.9°179.9°
C08C13C12H20179.0°179.9°
C35C34C33C320.2°0.1°
C35C34C33O37179.9°179.9°
C35C34C33O40179.9°179.8°
C35C34O37C38174.9°162.9°
C34C35C36H32179.8°180.0°
C04C05H16H17120.0°120.0°
C04C05H16H18120.0°120.1°
C04C05H17H18120.0°120.0°
N14C11C12C13179.2°180.0°
C11N14C15C2059.3°59.9°
C11N14C15C1666.8°60.1°
C11N14C15H2178.4°179.9°
N14C11C12H200.8°0.1°
C15N14C11C122.4°0.2°
N14C15C20C16120.8°120.0°
N14C15C20H2119.4°119.9°
N14C15C16H2115.3°119.9°
N14C15C20C19175.4°60.0°
N14C15C16C17145.9°60.1°
N14C15C20H564.2°179.9°
N14C15C20H655.0°60.0°
N14C15C16H2125.4°60.0°
N14C15C16H2293.7°180.0°
C11C12C13H20180.0°180.0°
C11C12C13H1179.0°180.0°
C32C33C34O40179.6°179.9°
C32C33C34O37179.7°179.8°
C32C33O40C39150.8°162.9°
C33C34O37C385.0°17.2°
C34C33O40C3928.9°17.2°
C34C33C32H30179.4°180.0°
C33C34C35H31179.9°179.8°
O37C34C33O400.0°0.3°
C34O37C38C3916.9°46.2°
O37C34C35H310.2°0.3°
C34O37C38H33137.6°73.4°
C34O37C38H34103.8°165.9°
C20C15C16H2119.8°120.0°
C15C20C19H5120.4°120.0°
C15C20C19H6120.4°120.0°
C20C15C16C1720.9°60.0°
C15C20C19C1826.5°60.0°
C15C20H5H6118.7°120.0°
C20C15C16H2199.5°180.0°
C20C15C16H22141.3°60.0°
C15C20C19H2494.0°180.0°
C15C20C19H25147.1°60.0°
C16C15C20C1954.5°60.0°
C15C16C17H21120.4°120.1°
C15C16C17H22120.4°120.0°
C15C16C17C1837.1°59.9°
C15C16C17H383.1°60.0°
C15C16C17H4157.3°180.0°
C16C15C20H5174.9°60.0°
C16C15C20H665.9°180.0°
C15C16H21H22118.8°120.0°
C33O40C39C3850.2°46.2°
O40C33C32H300.2°0.1°
C33O40C39H35170.8°73.4°
C33O40C39H3670.3°166.0°
C20C19C18H24120.6°120.0°
C20C19C18H25120.6°120.0°
C20C19C18C1730.7°60.0°
C20C19C18O21151.7°180.0°
C19C20C15H265.2°179.9°
C19C20H5H6118.7°120.0°
C20C19C18H2388.4°60.0°
C20C19H24H25118.2°120.0°
O37C38C39O4045.3°59.7°
O37C38C39H33120.7°119.6°
O37C38C39H34120.7°119.8°
O37C38H33H34117.8°120.7°
O37C38C39H35165.9°60.0°
O37C38C39H3675.3°179.5°
C16C17C18C1965.1°60.0°
C16C17C18H3120.2°119.9°
C16C17C18H4120.2°120.1°
C16C17C18O21173.4°179.9°
C17C16C15H298.9°180.0°
C16C17H3H4119.4°120.0°
C17C16H21H22118.7°119.9°
C16C17C18H2353.9°60.1°
O40C39C38H35120.6°119.7°
O40C39C38H36120.6°119.8°
O40C39C38H33166.0°59.9°
O40C39C38H3475.4°179.5°
O40C39H35H36118.3°120.7°
C19C18C17O21121.5°120.0°
C19C18C17H23119.0°120.0°
C19C18O21H23118.9°120.0°
C19C18O21C22173.2°90.0°
C19C18C17H355.1°60.0°
C19C18C17H4174.7°179.9°
C18C19C20H5146.9°60.0°
C18C19C20H693.9°180.0°
C18C19H24H25118.2°120.0°
C39C38H33H34117.7°120.6°
C38C39H35H36118.2°120.5°
C17C18O21H23118.6°120.0°
C17C18O21C2250.8°150.0°
C18C17H3H4119.4°120.0°
C18C17C16H21157.6°180.0°
C18C17C16H2283.3°60.0°
C17C18C19H24151.3°180.0°
C17C18C19H2589.9°60.0°
O21C18C17H366.4°60.0°
O21C18C17H453.3°60.0°
C18O21C22H7180.0°180.0°
C18O21C22H860.0°60.0°
C18O21C22H960.0°60.0°
O21C18C19H2487.7°60.0°
O21C18C19H2531.1°60.0°
O21C22H7H8120.0°120.0°
O21C22H7H9120.0°119.9°
O21C22H8H9120.0°119.9°
C22O21C18H2367.9°30.0°
H1C13C12H201.0°0.0°
H2C15C20H555.2°60.0°
H2C15C20H6174.4°59.9°
H2C15C16H21140.7°60.0°
H2C15C16H2221.5°60.0°
H3C17C16H2137.3°60.0°
H3C17C16H22156.5°180.0°
H3C17C18H23174.1°180.0°
H4C17C16H2182.2°59.9°
H4C17C16H2236.9°60.0°
H4C17C18H2366.3°60.0°
H5C20C19H2426.4°60.0°
H5C20C19H2592.5°180.0°
H6C20C19H24145.5°60.0°
H6C20C19H2526.7°60.0°
H7C22H8H9119.9°120.1°
H10C24C29H2850.4°170.9°
H10C24C29H29170.1°50.4°
H11C28C27H26175.3°49.2°
H11C28C27H2756.7°168.9°
H11C28C29H2871.3°172.0°
H11C28C29H29169.0°67.5°
H12C28C27H2655.5°71.3°
H12C28C27H2763.1°48.4°
H12C28C29H2848.6°67.6°
H12C28C29H2971.2°52.9°
H13C01H14H15120.0°120.0°
H16C05H17H18120.0°120.0°
H23C18C19H2432.2°60.0°
H23C18C19H25151.0°180.0°
H31C35C36H320.2°0.1°
H33C38C39H3573.4°179.6°
H33C38C39H3645.5°59.9°
H34C38C39H3545.1°59.8°
H34C38C39H36164.0°60.7°

250835

PDB entries from 2026-03-18

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