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YMX

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.39Å1.32ÅAromatic
C1C41sing1.37Å1.37ÅAromatic
C2N3sing1.37Å1.28ÅAromatic
C2C29sing1.41Å1.32ÅAromatic
N3N4sing1.40Å1.30ÅAromatic
N4C5doub1.31Å1.28ÅAromatic
C5N6sing1.40Å1.34Å
C5C29sing1.46Å1.35ÅAromatic
N6C7sing1.35Å1.33Å
C7O8doub1.22Å1.20Å
C7C9sing1.47Å1.41Å
C9C10doub1.40Å1.36ÅAromatic
C9C21sing1.41Å1.40ÅAromatic
C10C11sing1.36Å1.35ÅAromatic
C11C12doub1.39Å1.37ÅAromatic
C12N13sing1.39Å1.30Å
C12C20sing1.39Å1.35ÅAromatic
N13C14sing1.47Å1.43Å
N13C19sing1.47Å1.42Å
C14C15sing1.53Å1.49Å
C15N16sing1.47Å1.42Å
N16C17sing1.47Å1.42Å
N16C18sing1.47Å1.41Å
C18C19sing1.53Å1.47Å
C20C21doub1.39Å1.37ÅAromatic
C21N22sing1.39Å1.30Å
N22C23sing1.46Å1.42Å
C23C24sing1.53Å1.44Å
C23C28sing1.53Å1.44Å
C24C25sing1.53Å1.47Å
C25O26sing1.43Å1.31Å
O26C27sing1.43Å1.39Å
C27C28sing1.53Å1.53Å
C29C30doub1.40Å1.32ÅAromatic
C30C31sing1.37Å1.38ÅAromatic
C31C32sing1.51Å1.38Å
C31C41doub1.39Å1.38ÅAromatic
C32C33sing1.51Å1.41Å
C33C34doub1.38Å1.38ÅAromatic
C33C40sing1.38Å1.40ÅAromatic
C34C35sing1.38Å1.39ÅAromatic
C35F36sing1.35Å1.05Å
C35C37doub1.38Å1.39ÅAromatic
C37C38sing1.38Å1.38ÅAromatic
C38F39sing1.35Å1.03Å
C38C40doub1.38Å1.37ÅAromatic
C1H1sing1.08Å1.08Å
C10H10sing1.08Å1.08Å
C11H11sing1.08Å1.08Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C17H17sing1.09Å1.10Å
C17H17Asing1.09Å1.10Å
C17H17Bsing1.09Å1.10Å
C18H18sing1.09Å1.10Å
C18H18Asing1.09Å1.10Å
C19H19sing1.09Å1.10Å
C19H19Asing1.09Å1.10Å
C20H20sing1.08Å1.08Å
N22HN22sing0.97Å1.00Å
C23H23sing1.09Å1.10Å
C24H24sing1.09Å1.10Å
C24H24Asing1.09Å1.10Å
C25H25sing1.09Å1.10Å
C25H25Asing1.09Å1.10Å
C27H27sing1.09Å1.10Å
C27H27Asing1.09Å1.10Å
C28H28sing1.09Å1.10Å
C28H28Asing1.09Å1.10Å
C30H30sing1.08Å1.08Å
C32H32sing1.09Å1.10Å
C32H32Asing1.09Å1.10Å
C34H34sing1.08Å1.08Å
C37H37sing1.08Å1.08Å
C40H40sing1.08Å1.08Å
C41H41sing1.08Å1.08Å
N6H6sing0.97Å1.00Å
N3H3sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C41121.0°119.8°
C1C2N3131.6°133.8°
C1C2C29122.0°119.4°
C2C1H1119.5°120.1°
C1C41C31117.7°120.8°
C41C1H1119.5°120.1°
C1C41H41121.1°119.6°
N3C2C29106.4°106.8°
C2N3N4110.5°109.2°
C2N3H3124.7°125.4°
C2C29C5107.7°106.3°
C2C29C30118.7°119.7°
N3N4C5108.6°110.0°
N4N3H3124.8°125.4°
N4C5N6117.4°126.1°
N4C5C29106.7°107.7°
N6C5C29135.7°126.2°
C5N6C7125.5°120.0°
C5N6H6117.2°120.0°
C5C29C30133.6°134.0°
N6C7O8123.5°120.0°
N6C7C9115.5°120.0°
C7N6H6117.2°120.0°
O8C7C9120.8°120.0°
C7C9C10120.6°120.2°
C7C9C21125.7°120.2°
C10C9C21113.7°119.7°
C9C10C11124.8°120.1°
C9C10H10117.6°119.9°
C9C21C20122.7°119.6°
C9C21N22117.9°120.1°
C10C11C12119.9°120.4°
C11C10H10117.5°119.9°
C10C11H11120.0°119.8°
C11C12N13118.5°119.9°
C11C12C20118.6°120.2°
C12C11H11120.1°119.8°
N13C12C20122.8°119.9°
C12N13C14113.8°111.0°
C12N13C19113.9°111.0°
C12C20C21120.2°119.9°
C12C20H20119.9°120.0°
C14N13C19105.1°110.9°
N13C14C15111.4°109.4°
N13C14H14109.0°109.5°
N13C14H14A109.0°109.5°
N13C19C18105.7°109.4°
N13C19H19110.4°109.5°
N13C19H19A110.4°109.5°
C14C15N16109.8°109.4°
C15C14H14109.0°109.5°
C15C14H14A109.0°109.5°
C14C15H15109.4°109.5°
C14C15H15A109.4°109.5°
C15N16C17113.6°111.1°
C15N16C18104.0°110.8°
N16C15H15109.4°109.5°
N16C15H15A109.4°109.5°
C17N16C18104.6°111.0°
N16C17H17109.5°109.5°
N16C17H17A109.5°109.5°
N16C17H17B109.4°109.5°
N16C18C19107.9°109.4°
N16C18H18109.8°109.5°
N16C18H18A109.9°109.5°
C19C18H18109.9°109.5°
C19C18H18A109.9°109.5°
C18C19H19110.4°109.5°
C18C19H19A110.4°109.5°
C20C21N22119.4°120.2°
C21C20H20119.9°120.1°
C21N22C23123.6°120.0°
C21N22HN22105.8°120.0°
N22C23C24107.0°109.6°
N22C23C28107.9°109.6°
C23N22HN22105.8°120.0°
N22C23H23112.4°109.5°
C24C23C28104.9°109.1°
C23C24C25108.2°109.2°
C24C23H23112.1°109.5°
C23C24H24109.8°109.5°
C23C24H24A109.8°109.5°
C23C28C27109.6°109.2°
C28C23H23112.0°109.6°
C23C28H28109.4°109.5°
C23C28H28A109.4°109.6°
C24C25O26108.5°109.4°
C25C24H24109.8°109.5°
C25C24H24A109.8°109.5°
C24C25H25109.7°109.5°
C24C25H25A109.7°109.4°
C25O26C27104.5°114.1°
O26C25H25109.7°109.5°
O26C25H25A109.7°109.5°
O26C27C28112.9°109.4°
O26C27H27108.6°109.5°
O26C27H27A108.6°109.5°
C28C27H27108.6°109.5°
C28C27H27A108.6°109.5°
C27C28H28109.4°109.5°
C27C28H28A109.4°109.5°
C29C30C31122.7°119.7°
C29C30H30118.6°120.2°
C30C31C32121.9°119.7°
C30C31C41117.9°120.6°
C31C30H30118.7°120.2°
C32C31C41120.3°119.7°
C31C32C33110.8°109.5°
C31C32H32109.1°109.5°
C31C32H32A109.1°109.5°
C31C41H41121.2°119.6°
C32C33C34120.8°120.0°
C32C33C40122.0°119.9°
C33C32H32109.1°109.5°
C33C32H32A109.1°109.5°
C34C33C40117.2°120.1°
C33C34C35120.2°120.0°
C33C34H34119.9°119.9°
C33C40C38124.6°120.0°
C33C40H40117.7°120.0°
C34C35F36118.5°120.0°
C34C35C37120.2°120.0°
C35C34H34120.0°120.0°
F36C35C37121.3°120.0°
C35C37C38121.5°119.9°
C35C37H37119.2°120.0°
C37C38F39122.6°120.0°
C37C38C40116.3°120.0°
C38C37H37119.2°120.1°
F39C38C40121.0°120.0°
C38C40H40117.7°120.0°
H14C14H14A109.5°109.5°
H15C15H15A109.5°109.4°
H17C17H17A109.5°109.4°
H17C17H17B109.5°109.4°
H17AC17H17B109.5°109.5°
H18C18H18A109.5°109.5°
H19C19H19A109.4°109.5°
H24C24H24A109.4°109.5°
H25C25H25A109.5°109.5°
H27C27H27A109.5°109.5°
H28C28H28A109.5°109.5°
H32C32H32A109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C41H1180.0°179.8°
C1C2N3C29178.8°180.0°
C1C2N3N4179.6°180.0°
C1C2C29C5178.1°180.0°
C1C2C29C300.6°0.1°
C2C1C41C311.5°0.0°
C2C1C41H41178.6°180.0°
C1C2N3H30.4°0.0°
C41C1C2N3179.8°180.0°
C41C1C2C291.6°0.0°
C1C41C31C300.4°0.0°
C1C41C31C32178.8°180.0°
C1C41C31H41180.0°180.0°
C2N3N4H3180.0°179.9°
C2N3N4C52.2°0.0°
N3C2C29C50.8°0.0°
N3C2C29C30179.5°179.9°
N3C2C1H10.2°0.3°
C29C2N3N40.9°0.0°
C2C29C5N42.1°0.0°
C2C29C5N6176.3°180.0°
C2C29C5C30178.5°179.9°
C2C29C30C310.5°0.1°
C29C2C1H1178.4°179.8°
C2C29C30H30179.5°180.0°
C29C2N3H3179.1°180.0°
N3N4C5N6178.1°180.0°
N3N4C5C292.6°0.0°
N4C5N6C29173.8°180.0°
N4C5N6C7151.7°0.1°
N4C5C29C30179.4°179.9°
N4C5N6H628.3°180.0°
C5N4N3H3177.8°180.0°
C5N6C7H6180.0°180.0°
C5N6C7O811.7°0.0°
C5N6C7C9173.8°180.0°
N6C5C29C305.2°0.1°
C29C5N6C734.5°180.0°
C5C29C30C31178.8°180.0°
C5C29C30H301.2°0.1°
C29C5N6H6145.4°0.0°
N6C7O8C9174.2°179.9°
N6C7C9C1030.3°6.0°
N6C7C9C21151.3°173.8°
O8C7C9C10144.3°174.1°
O8C7C9C2134.1°6.1°
O8C7N6H6168.3°180.0°
C7C9C10C21178.6°179.8°
C7C9C10C11179.9°180.0°
C7C9C21C20179.2°179.7°
C7C9C21N220.1°0.0°
C7C9C10H100.1°0.1°
C9C7N6H66.2°0.1°
C9C10C11H10180.0°180.0°
C9C10C11C120.4°0.0°
C10C9C21C200.6°0.5°
C10C9C21N22178.6°179.8°
C9C10C11H11179.5°180.0°
C21C9C10C111.5°0.2°
C9C21C20C121.3°0.5°
C9C21C20N22179.3°179.7°
C9C21N22C23170.7°174.5°
C21C9C10H10178.5°179.7°
C9C21C20H20178.7°179.7°
C9C21N22HN2248.8°5.5°
C10C11C12H11180.0°180.0°
C10C11C12N13178.0°180.0°
C10C11C12C201.6°0.0°
C11C12N13C20176.2°179.9°
C11C12N13C14170.8°0.1°
C11C12N13C1968.8°123.8°
C11C12C20C212.4°0.3°
C12C11C10H10179.5°180.0°
C11C12C20H20177.6°180.0°
C12N13C14C19125.2°123.9°
C12N13C14C15175.5°176.8°
C12N13C19C18169.1°176.8°
N13C12C20C21178.6°179.8°
N13C12C11H112.0°0.1°
C12N13C14H1464.2°63.3°
C12N13C14H14A55.2°56.8°
C12N13C19H1949.7°56.8°
C12N13C19H19A71.5°63.2°
N13C12C20H201.4°0.0°
C20C12N13C145.4°180.0°
C20C12N13C19115.0°56.2°
C12C20C21H20180.0°179.7°
C12C20C21N22179.5°179.8°
C20C12C11H11178.4°180.0°
N13C14C15H14120.3°119.9°
N13C14C15H14A120.3°120.0°
N13C14C15N1658.0°58.4°
C14N13C19C1865.7°59.3°
N13C14H14H14A119.1°120.1°
N13C14C15H15178.0°178.4°
N13C14C15H15A62.0°61.6°
C14N13C19H19174.9°179.3°
C14N13C19H19A53.7°60.7°
C19N13C14C1559.3°59.3°
N13C19C18N1674.7°58.4°
N13C19C18H19119.4°120.0°
N13C19C18H19A119.4°120.0°
C19N13C14H1461.0°60.7°
C19N13C14H14A179.6°179.3°
N13C19C18H18165.5°178.4°
N13C19C18H18A45.0°61.6°
N13C19H19H19A121.8°120.0°
C14C15N16H15120.1°120.0°
C14C15N16H15A120.0°120.0°
C14C15N16C17173.1°176.8°
C14C15N16C1860.0°59.3°
C15C14H14H14A119.1°120.1°
C14C15H15H15A119.9°120.1°
C15N16C17C18112.7°123.8°
C15N16C18C1969.3°59.3°
N16C15C14H1462.3°61.5°
N16C15C14H14A178.3°178.4°
N16C15H15H15A119.8°120.0°
C15N16C17H17180.0°60.0°
C15N16C17H17A60.0°179.9°
C15N16C17H17B60.0°60.0°
C15N16C18H18171.0°179.3°
C15N16C18H18A50.5°60.7°
C17N16C18C19171.3°176.8°
C17N16C15H1566.9°56.8°
C17N16C15H15A53.0°63.2°
N16C17H17H17A120.0°120.1°
N16C17H17H17B120.0°120.0°
N16C17H17AH17B120.0°120.1°
C17N16C18H1851.6°56.8°
C17N16C18H18A68.9°63.2°
N16C18C19H18119.7°120.0°
N16C18C19H18A119.8°119.9°
C18N16C15H15180.0°179.4°
C18N16C15H15A60.1°60.7°
C18N16C17H1767.3°63.8°
C18N16C17H17A172.7°56.1°
C18N16C17H17B52.7°176.2°
N16C18H18H18A120.7°120.0°
N16C18C19H19165.8°178.4°
N16C18C19H19A44.7°61.6°
C19C18H18H18A120.7°120.1°
C18C19H19H19A121.8°120.1°
C20C21N22C2310.0°5.8°
C20C21N22HN22131.9°174.2°
C21N22C23HN22121.9°180.0°
C21N22C23C24117.6°155.0°
C21N22C23C28130.0°85.4°
N22C21C20H200.6°0.0°
C21N22C23H236.0°34.8°
N22C23C24C28114.4°119.9°
N22C23C24H23123.8°120.1°
N22C23C28H23124.3°120.2°
N22C23C24C25176.6°176.9°
N22C23C28C27166.6°176.9°
N22C23C24H2463.6°63.2°
N22C23C24H24A56.8°56.9°
N22C23C28H2846.6°57.0°
N22C23C28H28A73.4°63.2°
C24C23C28H23121.9°119.9°
C23C24C25H24119.8°119.9°
C23C24C25H24A119.8°119.9°
C23C24C25O2674.9°57.6°
C24C23C28C2752.7°56.9°
C24C23N22HN224.4°25.0°
C23C24H24H24A120.6°120.1°
C23C24C25H2544.9°62.4°
C23C24C25H25A165.2°177.6°
C24C23C28H2867.3°63.0°
C24C23C28H28A172.8°176.9°
C28C23C24C2562.2°56.9°
C23C28C27O2654.8°57.6°
C23C28C27H28120.0°119.9°
C23C28C27H28A120.0°120.0°
C28C23N22HN22108.0°94.6°
C28C23C24H24178.0°176.9°
C28C23C24H24A57.6°63.0°
C23C28C27H2765.7°62.4°
C23C28C27H27A175.3°177.6°
C23C28H28H28A119.9°120.2°
C24C25O26H25119.8°120.0°
C24C25O26H25A119.8°120.0°
C24C25O26C2769.8°61.2°
C25C24C23H2359.6°63.0°
C25C24H24H24A120.6°120.2°
C24C25H25H25A120.4°120.0°
C25O26C27C2861.3°61.1°
O26C25C24H24165.2°177.5°
O26C25C24H24A44.9°62.3°
O26C25H25H25A120.5°120.1°
C25O26C27H2759.3°58.8°
C25O26C27H27A178.3°178.9°
O26C27C28H27120.5°119.9°
O26C27C28H27A120.5°120.0°
C27O26C25H2550.1°58.8°
C27O26C25H25A170.4°178.9°
O26C27H27H27A118.5°120.1°
O26C27C28H2865.2°62.3°
O26C27C28H28A174.8°177.5°
C27C28C23H2369.2°63.0°
C28C27H27H27A118.4°120.0°
C27C28H28H28A120.0°120.2°
C29C30C31H30180.0°180.0°
C29C30C31C32177.8°180.0°
C29C30C31C410.6°0.0°
C30C31C32C41178.3°180.0°
C30C31C32C3366.0°90.0°
C30C31C32H32173.8°150.0°
C30C31C32H32A54.2°30.0°
C30C31C41H41179.6°180.0°
C31C32C33H32120.2°120.0°
C31C32C33H32A120.2°120.0°
C31C32C33C34107.6°90.0°
C31C32C33C4071.9°90.3°
C32C31C30H302.2°0.0°
C31C32H32H32A119.4°120.0°
C32C31C41H411.2°0.0°
C41C31C32C33112.3°90.0°
C31C41C1H1178.5°179.8°
C41C31C30H30179.5°180.0°
C41C31C32H327.9°30.0°
C41C31C32H32A127.5°150.0°
C32C33C34C40179.5°179.7°
C32C33C34C35179.9°180.0°
C32C33C40C38179.3°179.8°
C33C32H32H32A119.4°120.0°
C32C33C34H340.1°0.0°
C32C33C40H400.7°0.0°
C33C34C35H34180.0°180.0°
C33C34C35F36179.6°180.0°
C33C34C35C370.1°0.0°
C34C33C40C381.2°0.5°
C34C33C32H32132.2°30.0°
C34C33C32H32A12.6°150.0°
C34C33C40H40178.9°179.7°
C40C33C34C350.4°0.3°
C33C40C38C371.4°0.5°
C33C40C38F39179.1°179.8°
C33C40C38H40180.0°179.8°
C40C33C32H3248.3°149.8°
C40C33C32H32A167.9°29.8°
C40C33C34H34179.6°179.8°
C34C35F36C37179.7°180.0°
C34C35C37C380.2°0.1°
C34C35C37H37179.8°180.0°
F36C35C37C38179.9°180.0°
F36C35C34H340.4°0.1°
F36C35C37H370.1°0.1°
C35C37C38H37180.0°179.9°
C35C37C38F39179.6°180.0°
C35C37C38C400.9°0.3°
C37C35C34H34179.9°180.0°
C37C38F39C40179.5°179.7°
C37C38C40H40178.6°179.7°
F39C38C37H370.4°0.1°
F39C38C40H400.9°0.0°
C40C38C37H37179.1°179.8°
H1C1C41H411.4°0.2°
H10C10C11H110.5°0.0°
H14C14C15H1557.7°58.5°
H14C14C15H15A177.7°178.5°
H14AC14C15H1561.7°61.6°
H14AC14C15H15A58.3°58.4°
H17C17H17AH17B120.0°119.9°
H18C18C19H1946.1°61.6°
H18C18C19H19A75.1°58.4°
H18AC18C19H1974.4°58.5°
H18AC18C19H19A164.4°178.5°
HN22N22C23H23127.9°145.2°
H23C23C24H2460.2°57.0°
H23C23C24H24A179.4°177.1°
H23C23C28H28170.8°177.2°
H23C23C28H28A50.9°57.0°
H24C24C25H2574.9°57.5°
H24C24C25H25A45.4°62.5°
H24AC24C25H25164.7°177.7°
H24AC24C25H25A75.0°57.7°
H27C27C28H28174.3°177.8°
H27C27C28H28A54.3°57.6°
H27AC27C28H2855.3°57.7°
H27AC27C28H28A64.7°62.4°

224201

PDB entries from 2024-08-28

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