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SummaryGeometryRelated PDB entries

YMN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N10C28doub1.30Å1.43Å
C28N08sing1.37Å1.22Å
C28N11sing1.37Å1.45Å
N08C16sing1.47Å1.43Å
C16C14sing1.51Å1.48Å
I01C22sing2.09Å2.08Å
C18C14doub1.38Å1.35ÅAromatic
C18C22sing1.38Å1.35ÅAromatic
C14C20sing1.38Å1.35ÅAromatic
C22C26doub1.38Å1.35ÅAromatic
C20C24doub1.38Å1.36ÅAromatic
C26C24sing1.38Å1.36ÅAromatic
C16H1sing1.09Å1.10Å
C16H2sing1.09Å1.10Å
C24H3sing1.08Å1.08Å
C26H4sing1.08Å1.08Å
C18H5sing1.08Å1.08Å
C20H6sing1.08Å1.08Å
N08H7sing0.97Å1.00Å
N10H8sing0.97Å1.00Å
N11H9sing0.97Å1.00Å
N11H10sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N10C28N08121.4°120.0°
N10C28N11119.5°120.0°
C28N10H8112.0°120.0°
N08C28N11119.1°120.0°
C28N08C16110.3°120.0°
C28N08H7124.8°120.0°
C28N11H9120.0°120.0°
C28N11H10120.0°120.0°
N08C16C14107.3°109.5°
N08C16H1110.0°109.5°
N08C16H2110.0°109.4°
C16N08H7124.9°120.0°
C16C14C18120.3°120.0°
C16C14C20117.9°120.0°
C14C16H1110.0°109.5°
C14C16H2110.0°109.5°
I01C22C18121.1°120.0°
I01C22C26117.5°120.0°
C14C18C22118.0°120.0°
C18C14C20121.9°120.0°
C14C18H5121.0°120.0°
C18C22C26121.3°120.0°
C22C18H5121.0°120.0°
C14C20C24119.5°120.0°
C14C20H6120.2°120.0°
C22C26C24119.7°120.0°
C22C26H4120.2°120.0°
C20C24C26119.5°120.0°
C20C24H3120.3°120.0°
C24C20H6120.3°120.0°
C26C24H3120.2°120.0°
C24C26H4120.1°120.0°
H1C16H2109.5°109.5°
H9N11H10120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N10C28N08N11179.2°180.0°
N10C28N08C16178.6°0.0°
N10C28N08H71.4°180.0°
N10C28N11H9179.3°180.0°
N10C28N11H100.8°0.0°
C28N08C16H7180.0°180.0°
C28N08C16C14162.8°180.0°
C28N08C16H177.5°59.9°
C28N08C16H243.1°60.0°
N08C28N10H8179.2°180.0°
N08C28N11H90.0°0.1°
N08C28N11H10180.0°180.0°
N11C28N08C160.6°180.0°
N11C28N08H7179.4°0.0°
N11C28N10H80.0°0.0°
C28N11H9H10180.0°180.0°
N08C16C14H1119.7°120.0°
N08C16C14H2119.7°119.9°
N08C16C14C18139.1°89.8°
N08C16C14C2042.3°90.0°
N08C16H1H2121.0°119.9°
C16C14C18C20178.6°179.7°
C16C14C18C22178.8°179.7°
C16C14C20C24178.8°180.0°
C14C16H1H2121.0°120.0°
C16C14C18H51.2°0.3°
C16C14C20H61.2°0.0°
C14C16N08H717.2°0.0°
I01C22C18C14180.0°179.7°
I01C22C18C26179.9°179.8°
I01C22C26C24179.7°180.0°
I01C22C26H40.3°0.3°
I01C22C18H50.0°0.3°
C14C18C22H5180.0°180.0°
C14C18C22C260.1°0.0°
C18C14C20C240.2°0.3°
C18C14C16H119.4°30.3°
C18C14C16H2101.2°150.3°
C18C14C20H6179.8°179.7°
C22C18C14C200.2°0.0°
C18C22C26C240.2°0.3°
C18C22C26H4179.8°180.0°
C14C20C24H6180.0°180.0°
C14C20C24C260.1°0.6°
C20C14C16H1162.0°150.0°
C20C14C16H277.4°30.0°
C14C20C24H3179.9°180.0°
C20C14C18H5179.8°180.0°
C22C26C24C200.3°0.6°
C22C26C24H4180.0°179.7°
C22C26C24H3179.7°180.0°
C26C22C18H5180.0°180.0°
C20C24C26H3180.0°179.4°
C20C24C26H4179.7°179.7°
C26C24C20H6179.9°179.4°
H1C16N08H7102.5°120.0°
H2C16N08H7136.9°120.0°
H3C24C26H40.3°0.3°
H3C24C20H60.1°0.0°

248335

PDB entries from 2026-01-28

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