YMH
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | sing | 1.51Å | 1.50Å | |
C2 | C3 | doub | 1.38Å | 1.38Å | Aromatic |
C3 | C4 | sing | 1.39Å | 1.38Å | Aromatic |
C4 | N1 | sing | 1.40Å | 1.42Å | |
N1 | C5 | sing | 1.35Å | 1.35Å | |
C5 | O1 | doub | 1.22Å | 1.23Å | |
C5 | C6 | sing | 1.46Å | 1.48Å | |
C6 | C7 | sing | 1.41Å | 1.42Å | Aromatic |
C7 | O2 | sing | 1.36Å | 1.34Å | |
C7 | N2 | doub | 1.31Å | 1.34Å | Aromatic |
N2 | N3 | sing | 1.40Å | 1.36Å | Aromatic |
N3 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
C8 | C9 | doub | 1.35Å | 1.35Å | Aromatic |
C9 | C10 | sing | 1.40Å | 1.42Å | Aromatic |
C10 | C11 | doub | 1.37Å | 1.36Å | Aromatic |
C11 | C12 | sing | 1.40Å | 1.41Å | Aromatic |
C4 | C13 | doub | 1.39Å | 1.39Å | Aromatic |
C13 | C14 | sing | 1.51Å | 1.51Å | |
C14 | C15 | sing | 1.53Å | 1.54Å | |
C14 | C16 | sing | 1.53Å | 1.51Å | |
C13 | C17 | sing | 1.38Å | 1.39Å | Aromatic |
C17 | C18 | doub | 1.39Å | 1.38Å | Aromatic |
C18 | O3 | sing | 1.36Å | 1.41Å | |
O3 | C19 | sing | 1.36Å | 1.39Å | |
C19 | C20 | doub | 1.39Å | 1.38Å | Aromatic |
C20 | C21 | sing | 1.38Å | 1.38Å | Aromatic |
C21 | N4 | doub | 1.32Å | 1.33Å | Aromatic |
N4 | C22 | sing | 1.32Å | 1.34Å | Aromatic |
C22 | C23 | doub | 1.38Å | 1.39Å | Aromatic |
C2 | C18 | sing | 1.39Å | 1.38Å | Aromatic |
C19 | C23 | sing | 1.39Å | 1.38Å | Aromatic |
C6 | C12 | doub | 1.41Å | 1.40Å | Aromatic |
N3 | C12 | sing | 1.37Å | 1.38Å | Aromatic |
C1 | H3 | sing | 1.09Å | 1.10Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C1 | H2 | sing | 1.09Å | 1.10Å | |
C10 | H9 | sing | 1.08Å | 1.08Å | |
C11 | H10 | sing | 1.08Å | 1.08Å | |
C14 | H11 | sing | 1.09Å | 1.10Å | |
C15 | H13 | sing | 1.09Å | 1.10Å | |
C15 | H14 | sing | 1.09Å | 1.10Å | |
C15 | H12 | sing | 1.09Å | 1.10Å | |
C16 | H17 | sing | 1.09Å | 1.10Å | |
C16 | H15 | sing | 1.09Å | 1.10Å | |
C16 | H16 | sing | 1.09Å | 1.10Å | |
C17 | H18 | sing | 1.08Å | 1.08Å | |
C20 | H19 | sing | 1.08Å | 1.08Å | |
C21 | H20 | sing | 1.08Å | 1.08Å | |
C22 | H21 | sing | 1.08Å | 1.08Å | |
C23 | H22 | sing | 1.08Å | 1.08Å | |
C3 | H4 | sing | 1.08Å | 1.08Å | |
C8 | H7 | sing | 1.08Å | 1.08Å | |
C9 | H8 | sing | 1.08Å | 1.08Å | |
N1 | H5 | sing | 0.97Å | 1.00Å | |
O2 | H6 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C1 | C2 | C3 | 121.0° | 120.0° |
C1 | C2 | C18 | 121.7° | 120.0° |
C2 | C1 | H3 | 109.5° | 109.5° |
C2 | C1 | H1 | 109.5° | 109.5° |
C2 | C1 | H2 | 109.4° | 109.5° |
C2 | C3 | C4 | 121.7° | 120.0° |
C3 | C2 | C18 | 117.3° | 120.0° |
C2 | C3 | H4 | 119.2° | 120.0° |
C3 | C4 | N1 | 122.7° | 120.0° |
C3 | C4 | C13 | 121.1° | 120.0° |
C4 | C3 | H4 | 119.2° | 120.0° |
C4 | N1 | C5 | 129.4° | 120.0° |
N1 | C4 | C13 | 116.1° | 120.1° |
C4 | N1 | H5 | 115.3° | 120.0° |
N1 | C5 | O1 | 122.4° | 120.0° |
N1 | C5 | C6 | 115.3° | 120.0° |
C5 | N1 | H5 | 115.3° | 120.0° |
O1 | C5 | C6 | 121.9° | 120.0° |
C5 | C6 | C7 | 128.7° | 126.6° |
C5 | C6 | C12 | 125.4° | 126.6° |
C6 | C7 | O2 | 129.5° | 125.7° |
C6 | C7 | N2 | 110.6° | 108.6° |
C7 | C6 | C12 | 105.9° | 106.8° |
O2 | C7 | N2 | 119.8° | 125.7° |
C7 | O2 | H6 | 109.5° | 114.0° |
C7 | N2 | N3 | 106.1° | 109.6° |
N2 | N3 | C8 | 124.9° | 131.8° |
N2 | N3 | C12 | 111.9° | 108.1° |
N3 | C8 | C9 | 118.2° | 120.7° |
C8 | N3 | C12 | 123.2° | 120.1° |
N3 | C8 | H7 | 120.9° | 119.6° |
C8 | C9 | C10 | 120.9° | 120.4° |
C9 | C8 | H7 | 120.9° | 119.7° |
C8 | C9 | H8 | 119.6° | 119.8° |
C9 | C10 | C11 | 120.4° | 119.3° |
C9 | C10 | H9 | 119.8° | 120.3° |
C10 | C9 | H8 | 119.6° | 119.8° |
C10 | C11 | C12 | 119.3° | 119.3° |
C11 | C10 | H9 | 119.8° | 120.3° |
C10 | C11 | H10 | 120.3° | 120.4° |
C11 | C12 | C6 | 136.6° | 132.8° |
C11 | C12 | N3 | 118.0° | 120.3° |
C12 | C11 | H10 | 120.3° | 120.4° |
C4 | C13 | C14 | 122.5° | 120.0° |
C4 | C13 | C17 | 117.0° | 120.0° |
C13 | C14 | C15 | 111.5° | 109.5° |
C13 | C14 | C16 | 112.4° | 109.5° |
C14 | C13 | C17 | 120.5° | 120.1° |
C13 | C14 | H11 | 107.4° | 109.5° |
C15 | C14 | C16 | 110.8° | 109.4° |
C15 | C14 | H11 | 107.1° | 109.5° |
C14 | C15 | H13 | 109.5° | 109.5° |
C14 | C15 | H14 | 109.5° | 109.4° |
C14 | C15 | H12 | 109.5° | 109.4° |
C16 | C14 | H11 | 107.4° | 109.4° |
C14 | C16 | H17 | 109.5° | 109.4° |
C14 | C16 | H15 | 109.4° | 109.5° |
C14 | C16 | H16 | 109.5° | 109.5° |
C13 | C17 | C18 | 121.3° | 120.0° |
C13 | C17 | H18 | 119.3° | 119.9° |
C17 | C18 | O3 | 114.2° | 119.9° |
C17 | C18 | C2 | 121.4° | 120.1° |
C18 | C17 | H18 | 119.3° | 120.1° |
C18 | O3 | C19 | 121.9° | 118.0° |
O3 | C18 | C2 | 124.1° | 120.0° |
O3 | C19 | C20 | 117.7° | 120.9° |
O3 | C19 | C23 | 122.9° | 120.8° |
C19 | C20 | C21 | 118.5° | 119.1° |
C20 | C19 | C23 | 119.3° | 118.3° |
C19 | C20 | H19 | 120.7° | 120.4° |
C20 | C21 | N4 | 123.3° | 120.8° |
C21 | C20 | H19 | 120.7° | 120.5° |
C20 | C21 | H20 | 118.4° | 119.6° |
C21 | N4 | C22 | 117.4° | 121.9° |
N4 | C21 | H20 | 118.4° | 119.6° |
N4 | C22 | C23 | 123.4° | 120.8° |
N4 | C22 | H21 | 118.3° | 119.6° |
C22 | C23 | C19 | 118.0° | 119.1° |
C23 | C22 | H21 | 118.3° | 119.7° |
C22 | C23 | H22 | 121.0° | 120.4° |
C19 | C23 | H22 | 121.0° | 120.4° |
C6 | C12 | N3 | 105.5° | 107.0° |
H3 | C1 | H1 | 109.5° | 109.5° |
H3 | C1 | H2 | 109.5° | 109.5° |
H1 | C1 | H2 | 109.4° | 109.5° |
H13 | C15 | H14 | 109.5° | 109.5° |
H13 | C15 | H12 | 109.5° | 109.4° |
H14 | C15 | H12 | 109.4° | 109.5° |
H17 | C16 | H15 | 109.5° | 109.5° |
H17 | C16 | H16 | 109.4° | 109.5° |
H15 | C16 | H16 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C1 | C2 | C3 | C18 | 179.2° | 180.0° |
C1 | C2 | C3 | C4 | 177.6° | 179.7° |
C1 | C2 | C18 | C17 | 177.0° | 180.0° |
C1 | C2 | C18 | O3 | 3.2° | 0.1° |
C2 | C1 | H3 | H1 | 120.0° | 120.0° |
C2 | C1 | H3 | H2 | 120.0° | 120.0° |
C2 | C1 | H1 | H2 | 120.0° | 120.0° |
C1 | C2 | C3 | H4 | 2.5° | 0.0° |
C2 | C3 | C4 | H4 | 180.0° | 179.7° |
C2 | C3 | C4 | N1 | 179.5° | 180.0° |
C2 | C3 | C4 | C13 | 4.0° | 0.5° |
C3 | C2 | C18 | C17 | 3.7° | 0.1° |
C3 | C2 | C18 | O3 | 177.5° | 180.0° |
C3 | C2 | C1 | H3 | 89.6° | 90.0° |
C3 | C2 | C1 | H1 | 150.4° | 150.0° |
C3 | C2 | C1 | H2 | 30.4° | 30.0° |
C3 | C4 | N1 | C13 | 176.6° | 179.4° |
C3 | C4 | N1 | C5 | 19.7° | 34.7° |
C3 | C4 | C13 | C14 | 177.6° | 179.7° |
C3 | C4 | C13 | C17 | 5.0° | 0.5° |
C4 | C3 | C2 | C18 | 3.2° | 0.2° |
C3 | C4 | N1 | H5 | 160.3° | 145.2° |
C4 | N1 | C5 | H5 | 180.0° | 179.9° |
C4 | N1 | C5 | O1 | 18.9° | 4.3° |
C4 | N1 | C5 | C6 | 153.6° | 175.6° |
N1 | C4 | C13 | C14 | 0.9° | 0.3° |
N1 | C4 | C13 | C17 | 178.3° | 179.9° |
N1 | C4 | C3 | H4 | 0.5° | 0.3° |
N1 | C5 | O1 | C6 | 172.0° | 179.9° |
N1 | C5 | C6 | C7 | 0.0° | 90.1° |
C5 | N1 | C4 | C13 | 156.9° | 144.8° |
N1 | C5 | C6 | C12 | 179.1° | 90.0° |
O1 | C5 | C6 | C7 | 172.6° | 90.0° |
O1 | C5 | C6 | C12 | 6.5° | 89.9° |
O1 | C5 | N1 | H5 | 161.1° | 175.5° |
C5 | C6 | C7 | C12 | 179.2° | 180.0° |
C5 | C6 | C7 | O2 | 0.4° | 0.0° |
C5 | C6 | C7 | N2 | 178.5° | 180.0° |
C5 | C6 | C12 | C11 | 0.4° | 0.0° |
C5 | C6 | C12 | N3 | 178.5° | 180.0° |
C6 | C5 | N1 | H5 | 26.4° | 4.5° |
C6 | C7 | O2 | N2 | 178.0° | 179.9° |
C6 | C7 | N2 | N3 | 0.3° | 0.1° |
C7 | C6 | C12 | C11 | 179.7° | 179.9° |
C7 | C6 | C12 | N3 | 0.8° | 0.0° |
C6 | C7 | O2 | H6 | 178.0° | 89.9° |
O2 | C7 | N2 | N3 | 178.6° | 180.0° |
O2 | C7 | C6 | C12 | 178.8° | 180.0° |
C7 | N2 | N3 | C8 | 179.9° | 179.4° |
N2 | C7 | C6 | C12 | 0.7° | 0.0° |
C7 | N2 | N3 | C12 | 0.2° | 0.0° |
N2 | C7 | O2 | H6 | 0.0° | 90.0° |
N2 | N3 | C8 | C12 | 180.0° | 179.3° |
N2 | N3 | C8 | C9 | 179.9° | 179.9° |
N2 | N3 | C12 | C11 | 179.8° | 180.0° |
N2 | N3 | C12 | C6 | 0.6° | 0.0° |
N2 | N3 | C8 | H7 | 0.1° | 0.5° |
N3 | C8 | C9 | H7 | 180.0° | 179.4° |
N3 | C8 | C9 | C10 | 0.1° | 0.5° |
C8 | N3 | C12 | C11 | 0.3° | 0.6° |
C8 | N3 | C12 | C6 | 179.4° | 179.5° |
N3 | C8 | C9 | H8 | 179.9° | 180.0° |
C8 | C9 | C10 | H8 | 180.0° | 179.4° |
C8 | C9 | C10 | C11 | 0.2° | 0.0° |
C9 | C8 | N3 | C12 | 0.1° | 0.8° |
C8 | C9 | C10 | H9 | 179.8° | 179.7° |
C9 | C10 | C11 | H9 | 180.0° | 179.7° |
C9 | C10 | C11 | C12 | 0.4° | 0.2° |
C9 | C10 | C11 | H10 | 179.6° | 179.7° |
C10 | C9 | C8 | H7 | 179.9° | 180.0° |
C10 | C11 | C12 | H10 | 180.0° | 179.9° |
C10 | C11 | C12 | C6 | 179.2° | 180.0° |
C10 | C11 | C12 | N3 | 0.4° | 0.1° |
C11 | C10 | C9 | H8 | 179.8° | 179.5° |
C11 | C12 | C6 | N3 | 178.9° | 180.0° |
C12 | C11 | C10 | H9 | 179.6° | 179.9° |
C4 | C13 | C14 | C17 | 177.3° | 179.8° |
C4 | C13 | C14 | C15 | 142.7° | 114.8° |
C4 | C13 | C14 | C16 | 92.2° | 125.3° |
C4 | C13 | C17 | C18 | 5.6° | 0.2° |
C4 | C13 | C14 | H11 | 25.7° | 5.2° |
C4 | C13 | C17 | H18 | 174.4° | 179.7° |
C13 | C4 | C3 | H4 | 176.0° | 179.7° |
C13 | C4 | N1 | H5 | 23.1° | 35.4° |
C13 | C14 | C15 | C16 | 126.0° | 120.0° |
C13 | C14 | C15 | H11 | 117.2° | 120.1° |
C13 | C14 | C16 | H11 | 117.9° | 120.1° |
C14 | C13 | C17 | C18 | 176.9° | 180.0° |
C13 | C14 | C15 | H13 | 180.0° | 59.9° |
C13 | C14 | C15 | H14 | 60.0° | 180.0° |
C13 | C14 | C15 | H12 | 60.0° | 60.0° |
C13 | C14 | C16 | H17 | 180.0° | 60.0° |
C13 | C14 | C16 | H15 | 60.0° | 180.0° |
C13 | C14 | C16 | H16 | 60.0° | 60.0° |
C14 | C13 | C17 | H18 | 3.0° | 0.1° |
C15 | C14 | C16 | H11 | 116.6° | 119.9° |
C15 | C14 | C13 | C17 | 39.9° | 65.0° |
C14 | C15 | H13 | H14 | 120.0° | 120.0° |
C14 | C15 | H13 | H12 | 120.0° | 119.9° |
C14 | C15 | H14 | H12 | 120.0° | 120.0° |
C15 | C14 | C16 | H17 | 54.5° | 180.0° |
C15 | C14 | C16 | H15 | 174.6° | 60.0° |
C15 | C14 | C16 | H16 | 65.5° | 60.0° |
C16 | C14 | C13 | C17 | 85.1° | 54.9° |
C16 | C14 | C15 | H13 | 54.0° | 60.1° |
C16 | C14 | C15 | H14 | 66.0° | 60.0° |
C16 | C14 | C15 | H12 | 174.0° | 180.0° |
C14 | C16 | H17 | H15 | 120.0° | 120.0° |
C14 | C16 | H17 | H16 | 120.0° | 120.0° |
C14 | C16 | H15 | H16 | 120.0° | 120.0° |
C13 | C17 | C18 | H18 | 180.0° | 180.0° |
C13 | C17 | C18 | O3 | 179.5° | 180.0° |
C13 | C17 | C18 | C2 | 5.1° | 0.1° |
C17 | C13 | C14 | H11 | 157.0° | 175.0° |
C17 | C18 | O3 | C2 | 174.2° | 179.9° |
C17 | C18 | O3 | C19 | 116.3° | 5.3° |
C18 | O3 | C19 | C20 | 175.2° | 75.2° |
C18 | O3 | C19 | C23 | 8.5° | 105.1° |
O3 | C18 | C17 | H18 | 0.5° | 0.1° |
O3 | C19 | C20 | C23 | 176.5° | 179.8° |
O3 | C19 | C20 | C21 | 179.2° | 179.8° |
O3 | C19 | C23 | C22 | 178.9° | 179.8° |
C19 | O3 | C18 | C2 | 69.4° | 174.8° |
O3 | C19 | C20 | H19 | 0.8° | 0.3° |
O3 | C19 | C23 | H22 | 1.1° | 0.3° |
C19 | C20 | C21 | H19 | 180.0° | 180.0° |
C19 | C20 | C21 | N4 | 1.3° | 0.0° |
C20 | C19 | C23 | C22 | 2.6° | 0.0° |
C19 | C20 | C21 | H20 | 178.8° | 180.0° |
C20 | C19 | C23 | H22 | 177.4° | 180.0° |
C20 | C21 | N4 | H20 | 180.0° | 179.9° |
C20 | C21 | N4 | C22 | 0.3° | 0.1° |
C21 | C20 | C19 | C23 | 2.7° | 0.0° |
C21 | N4 | C22 | C23 | 0.4° | 0.1° |
N4 | C21 | C20 | H19 | 178.7° | 180.0° |
C21 | N4 | C22 | H21 | 179.6° | 180.0° |
N4 | C22 | C23 | H21 | 180.0° | 179.9° |
N4 | C22 | C23 | C19 | 1.0° | 0.0° |
C22 | N4 | C21 | H20 | 179.7° | 180.0° |
N4 | C22 | C23 | H22 | 179.0° | 180.0° |
C22 | C23 | C19 | H22 | 180.0° | 180.0° |
C18 | C2 | C1 | H3 | 89.6° | 90.0° |
C18 | C2 | C1 | H1 | 30.4° | 30.0° |
C18 | C2 | C1 | H2 | 150.4° | 150.0° |
C2 | C18 | C17 | H18 | 174.9° | 180.0° |
C18 | C2 | C3 | H4 | 176.8° | 180.0° |
C23 | C19 | C20 | H19 | 177.3° | 180.0° |
C19 | C23 | C22 | H21 | 179.0° | 180.0° |
C6 | C12 | C11 | H10 | 0.8° | 0.1° |
N3 | C12 | C11 | H10 | 179.6° | 180.0° |
C12 | N3 | C8 | H7 | 179.9° | 179.8° |
H3 | C1 | H1 | H2 | 120.0° | 120.0° |
H9 | C10 | C11 | H10 | 0.4° | 0.0° |
H9 | C10 | C9 | H8 | 0.2° | 0.3° |
H11 | C14 | C15 | H13 | 62.8° | NaN° |
H11 | C14 | C15 | H14 | 177.2° | 59.9° |
H11 | C14 | C15 | H12 | 57.2° | 60.1° |
H11 | C14 | C16 | H17 | 62.1° | 60.1° |
H11 | C14 | C16 | H15 | 57.9° | 59.9° |
H11 | C14 | C16 | H16 | 177.9° | 180.0° |
H13 | C15 | H14 | H12 | 120.0° | 120.0° |
H17 | C16 | H15 | H16 | 120.0° | 120.0° |
H19 | C20 | C21 | H20 | 1.2° | 0.1° |
H21 | C22 | C23 | H22 | 1.0° | 0.1° |
H7 | C8 | C9 | H8 | 0.1° | 0.6° |