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YLY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C4N3sing1.33Å1.34ÅAromatic
C4N9sing1.37Å1.34ÅAromatic
C4C5doub1.40Å1.39ÅAromatic
C5N7sing1.35Å1.33ÅAromatic
C5C6sing1.41Å1.41ÅAromatic
C6N1doub1.33Å1.34ÅAromatic
C6N6sing1.38Å1.32Å
C8N9sing1.36Å1.34ÅAromatic
C8N7doub1.30Å1.33ÅAromatic
C8H8sing1.08Å1.08Å
N1C2sing1.32Å1.33ÅAromatic
N3C2doub1.32Å1.33ÅAromatic
CAACBFsing1.53Å1.51Å
CAAHAA1sing1.09Å1.10Å
CAAHAA2sing1.09Å1.10Å
CAAHAA3sing1.09Å1.10Å
CBFCBKsing1.54Å1.53Å
CBFCAPsing1.55Å1.50Å
CBFHBFsing1.09Å1.10Å
CAPCAJsing1.55Å1.52Å
CAPHAP1sing1.09Å1.10Å
CAPHAP2sing1.09Å1.10Å
CAJNASsing1.49Å1.34Å
CAJHAJ1sing1.09Å1.10Å
CAJHAJ2sing1.09Å1.10Å
NASCBKsing1.48Å1.47Å
NASHNASsing1.01Å1.00Å
CBKCBAsing1.51Å1.56Å
CBKHBKsing1.09Å1.10Å
CBAOADdoub1.21Å1.23Å
CBANAWsing1.35Å1.31Å
NAWCAOsing1.47Å1.44Å
NAWHNAWsing0.97Å1.00Å
CAOCAMsing1.53Å1.54Å
CAOHAO1sing1.09Å1.10Å
CAOHAO2sing1.09Å1.10Å
CAMCANsing1.53Å1.56Å
CAMHAM1sing1.09Å1.10Å
CAMHAM2sing1.09Å1.10Å
CANCBsing1.53Å1.53Å
CANHAN1sing1.09Å1.10Å
CANHAN2sing1.09Å1.10Å
CBCAsing1.53Å1.54Å
CBHB1sing1.09Å1.10Å
CBHB2sing1.09Å1.10Å
CANsing1.47Å1.48Å
CACsing1.51Å1.54Å
CAHAsing1.09Å1.10Å
NHN1sing1.01Å1.00Å
NHN2sing1.01Å1.00Å
COAYsing1.34Å1.38Å
COdoub1.21Å1.22Å
OAYPBNsing1.61Å1.66Å
PBNO5'sing1.61Å1.59Å
PBNOAIdoub1.48Å1.55Å
PBNOAFsing1.61Å1.47Å
OAFHOAFsing0.97Å0.95Å
O5'C5'sing1.43Å1.40Å
C5'C4'sing1.53Å1.48Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'C3'sing1.54Å1.49Å
C4'O4'sing1.44Å1.45Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.42Å
C3'O3'sing1.43Å1.41Å
C3'C2'sing1.55Å1.51Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C2'O2'sing1.43Å1.38Å
C2'C1'sing1.55Å1.54Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.46Å1.50Å
C1'H1'sing1.09Å1.10Å
C2H2sing1.08Å1.08Å
N6HN61sing0.97Å1.00Å
N6HN62sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N3C4N9133.2°134.9°
N3C4C5119.7°119.1°
C4N3C2119.9°120.7°
N9C4C5107.1°106.0°
C4N9C8107.8°107.4°
C4N9C1'124.5°126.3°
C4C5N7107.2°107.2°
C4C5C6118.6°118.2°
N7C5C6134.2°134.6°
C5N7C8108.5°109.4°
C5C6N1118.5°118.4°
C5C6N6121.0°120.9°
N1C6N6120.5°120.7°
C6N1C2120.9°121.2°
C6N6HN61109.5°120.0°
C6N6HN62109.5°120.1°
N9C8N7109.3°110.0°
N9C8H8125.4°125.0°
C8N9C1'127.6°126.3°
N7C8H8125.3°125.0°
N1C2N3122.4°122.4°
N1C2H2118.8°118.8°
N3C2H2118.8°118.8°
CBFCAAHAA1109.5°109.4°
CBFCAAHAA2109.5°109.4°
CBFCAAHAA3109.4°109.5°
CAACBFCBK110.3°110.3°
CAACBFCAP106.7°110.3°
CAACBFHBF108.1°110.3°
HAA1CAAHAA2109.4°109.5°
HAA1CAAHAA3109.4°109.5°
HAA2CAAHAA3109.5°109.5°
CBKCBFCAP100.1°105.1°
CBKCBFHBF114.0°110.3°
CBFCBKNAS104.4°107.1°
CBFCBKCBA116.4°109.9°
CBFCBKHBK111.8°109.9°
CAPCBFHBF117.2°110.4°
CBFCAPCAJ101.5°102.9°
CBFCAPHAP1112.2°110.7°
CBFCAPHAP2113.9°110.8°
CAJCAPHAP1112.2°110.7°
CAJCAPHAP2113.9°110.7°
CAPCAJNAS110.8°103.2°
CAPCAJHAJ1109.0°110.7°
CAPCAJHAJ2108.7°110.6°
HAP1CAPHAP2103.5°110.7°
NASCAJHAJ1109.0°110.7°
NASCAJHAJ2108.7°110.7°
CAJNASCBK107.5°105.8°
CAJNASHNAS110.1°111.0°
HAJ1CAJHAJ2110.5°110.7°
CBKNASHNAS110.1°111.0°
NASCBKCBA117.7°109.9°
NASCBKHBK110.2°110.0°
CBACBKHBK96.3°110.0°
CBKCBAOAD122.0°120.0°
CBKCBANAW121.7°120.0°
OADCBANAW115.8°120.0°
CBANAWCAO135.1°120.0°
CBANAWHNAW112.5°119.9°
CAONAWHNAW112.4°120.0°
NAWCAOCAM102.1°109.5°
NAWCAOHAO1112.0°109.5°
NAWCAOHAO2113.6°109.5°
CAMCAOHAO1112.0°109.5°
CAMCAOHAO2113.6°109.5°
CAOCAMCAN109.7°109.5°
CAOCAMHAM1109.4°109.4°
CAOCAMHAM2109.3°109.5°
HAO1CAOHAO2103.9°109.4°
CANCAMHAM1109.4°109.5°
CANCAMHAM2109.3°109.5°
CAMCANCB110.3°109.5°
CAMCANHAN1109.2°109.5°
CAMCANHAN2109.0°109.5°
HAM1CAMHAM2109.7°109.5°
CBCANHAN1109.2°109.4°
CBCANHAN2109.0°109.5°
CANCBCA114.7°109.5°
CANCBHB1107.8°109.5°
CANCBHB2106.6°109.5°
HAN1CANHAN2110.1°109.5°
CACBHB1107.8°109.5°
CACBHB2106.6°109.4°
CBCAN116.8°109.5°
CBCAC113.1°109.5°
CBCAHA101.2°109.5°
HB1CBHB2113.6°109.5°
NCAC109.1°109.5°
NCAHA105.9°109.5°
CANHN1109.5°111.0°
CANHN2109.5°111.0°
CCAHA110.2°109.5°
CACOAY118.1°120.1°
CACO115.7°120.0°
HN1NHN2109.4°111.0°
OAYCO126.2°119.9°
COAYPBN117.2°117.0°
OAYPBNO5'98.3°109.5°
OAYPBNOAI105.4°109.5°
OAYPBNOAF112.9°109.5°
O5'PBNOAI111.0°109.5°
O5'PBNOAF115.2°109.5°
PBNO5'C5'119.3°123.0°
OAIPBNOAF112.8°109.5°
PBNOAFHOAF109.5°114.0°
O5'C5'C4'99.0°109.4°
O5'C5'H5'1113.1°109.4°
O5'C5'H5'2115.2°109.5°
C4'C5'H5'1113.1°109.5°
C4'C5'H5'2115.2°109.5°
C5'C4'C3'123.5°109.9°
C5'C4'O4'107.7°109.9°
C5'C4'H4'99.1°109.9°
H5'1C5'H5'2101.7°109.5°
C3'C4'O4'103.2°107.3°
C3'C4'H4'104.0°109.8°
C4'C3'O3'112.9°110.5°
C4'C3'C2'96.3°104.2°
C4'C3'H3'115.3°110.5°
O4'C4'H4'120.8°110.0°
C4'O4'C1'101.2°106.9°
O4'C1'C2'105.1°103.5°
O4'C1'N9110.6°110.6°
O4'C1'H1'113.2°110.6°
O3'C3'C2'108.3°110.5°
O3'C3'H3'104.7°110.4°
C3'O3'HO3'109.5°114.0°
C2'C3'H3'119.5°110.6°
C3'C2'O2'102.3°110.9°
C3'C2'C1'105.1°102.1°
C3'C2'H2'116.2°110.9°
O2'C2'C1'108.2°110.9°
O2'C2'H2'113.4°110.8°
C2'O2'HO2'109.5°114.0°
C1'C2'H2'111.0°110.9°
C2'C1'N9113.8°110.6°
C2'C1'H1'110.0°110.6°
N9C1'H1'104.4°110.6°
HN61N6HN62109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N3C4N9C5179.3°179.8°
N3C4C5N7179.4°180.0°
N3C4C5C60.6°0.1°
N3C4N9C8179.6°180.0°
C4N3C2N10.3°0.0°
N3C4N9C1'0.3°0.1°
C4N3C2H2179.7°180.0°
N9C4C5N70.0°0.1°
N9C4C5C6179.9°179.8°
C4N9C8C1'179.8°180.0°
C4N9C8N70.4°0.2°
C4N9C8H8179.6°179.9°
N9C4N3C2179.8°179.8°
C4N9C1'O4'146.8°158.9°
C4N9C1'C2'95.2°87.0°
C4N9C1'H1'24.7°36.0°
C4C5N7C6179.9°179.9°
C4C5C6N10.4°0.0°
C4C5C6N6178.8°180.0°
C5C4N9C80.3°0.2°
C4C5N7C80.2°0.0°
C5C4N3C20.6°0.0°
C5C4N9C1'179.6°179.8°
N7C5C6N1179.7°180.0°
N7C5C6N61.1°0.1°
C5N7C8N90.4°0.1°
C5N7C8H8179.6°179.9°
C5C6N1N6179.2°180.0°
C6C5N7C8179.7°179.9°
C5C6N1C20.1°0.0°
C5C6N6HN61139.9°0.0°
C5C6N6HN6219.9°180.0°
C6N1C2N30.0°0.1°
C6N1C2H2180.0°180.0°
N1C6N6HN6139.3°179.9°
N1C6N6HN62159.3°0.0°
N6C6N1C2179.1°180.0°
C6N6HN61HN62120.0°179.9°
N9C8N7H8180.0°179.8°
C8N9C1'O4'33.4°21.1°
C8N9C1'C2'84.6°93.0°
C8N9C1'H1'155.5°144.1°
N7C8N9C1'179.4°179.8°
H8C8N9C1'0.6°0.0°
N1C2N3H2180.0°180.0°
CBFCAAHAA1HAA2120.0°119.9°
CBFCAAHAA1HAA3120.0°120.0°
CBFCAAHAA2HAA3120.0°120.0°
CAACBFCBKCAP112.2°118.9°
CAACBFCBKHBF121.8°122.1°
CAACBFCAPHBF121.3°122.1°
CAACBFCAPCAJ79.2°140.8°
CAACBFCAPHAP140.8°22.5°
CAACBFCAPHAP2158.0°100.8°
CAACBFCBKNAS74.0°117.6°
CAACBFCBKCBA57.5°1.7°
CAACBFCBKHBK166.8°122.9°
HAA1CAAHAA2HAA3120.0°120.0°
HAA1CAACBFCBK102.7°60.0°
HAA1CAACBFCAP149.4°175.7°
HAA1CAACBFHBF22.6°62.1°
HAA2CAACBFCBK137.3°180.0°
HAA2CAACBFCAP29.4°64.3°
HAA2CAACBFHBF97.4°57.9°
HAA3CAACBFCBK17.3°60.0°
HAA3CAACBFCAP90.6°55.7°
HAA3CAACBFHBF142.5°177.9°
CBKCBFCAPHBF123.8°118.9°
CBKCBFCAPCAJ35.7°21.9°
CBKCBFCAPHAP1155.7°96.5°
CBKCBFCAPHAP287.1°140.3°
CBFCBKNASCAJ25.2°25.4°
CBFCBKNASCBA130.7°119.3°
CBFCBKNASHBK120.2°119.4°
CBFCBKNASHNAS94.8°145.9°
CBFCBKCBAHBK118.2°121.2°
CBFCBKCBAOAD11.8°100.0°
CBFCBKCBANAW176.9°80.0°
CBFCAPCAJHAP1120.0°118.3°
CBFCAPCAJHAP2122.8°118.4°
CBFCAPHAP1HAP2123.2°123.3°
CBFCAPCAJNAS23.0°37.4°
CBFCAPCAJHAJ196.9°155.9°
CBFCAPCAJHAJ2142.5°81.1°
CAPCBFCBKNAS38.2°1.3°
CAPCBFCBKCBA169.7°120.6°
CAPCBFCBKHBK81.0°118.2°
HBFCBFCAPCAJ159.5°97.0°
HBFCBFCAPHAP180.5°144.6°
HBFCBFCAPHAP236.7°21.3°
HBFCBFCBKNAS164.1°120.3°
HBFCBFCBKCBA64.3°120.4°
HBFCBFCBKHBK44.9°0.8°
CAJCAPHAP1HAP2123.2°123.2°
CAPCAJNASHAJ1120.0°118.5°
CAPCAJNASHAJ2119.4°118.4°
CAPCAJHAJ1HAJ2119.4°123.0°
CAPCAJNASCBK1.4°39.2°
CAPCAJNASHNAS118.6°159.7°
HAP1CAPCAJNAS143.0°81.0°
HAP1CAPCAJHAJ123.1°37.5°
HAP1CAPCAJHAJ297.5°160.6°
HAP2CAPCAJNAS99.8°155.8°
HAP2CAPCAJHAJ1140.2°85.7°
HAP2CAPCAJHAJ219.7°37.3°
NASCAJHAJ1HAJ2119.5°123.2°
CAJNASCBKHNAS120.0°120.5°
CAJNASCBKCBA155.9°144.7°
CAJNASCBKHBK95.1°94.0°
HAJ1CAJNASCBK121.4°157.7°
HAJ1CAJNASHNAS1.4°81.8°
HAJ2CAJNASCBK118.0°79.2°
HAJ2CAJNASHNAS122.0°41.3°
NASCBKCBAHBK116.8°121.3°
NASCBKCBAOAD136.9°17.5°
NASCBKCBANAW51.9°162.4°
HNASNASCBKCBA35.9°94.8°
HNASNASCBKHBK144.9°26.4°
CBKCBAOADNAW171.7°179.9°
CBKCBANAWCAO9.1°180.0°
CBKCBANAWHNAW170.9°0.1°
HBKCBKCBAOAD106.3°138.8°
HBKCBKCBANAW64.9°41.1°
OADCBANAWCAO179.2°0.1°
OADCBANAWHNAW0.8°180.0°
CBANAWCAOHNAW180.0°179.9°
CBANAWCAOCAM149.7°180.0°
CBANAWCAOHAO129.6°59.9°
CBANAWCAOHAO287.7°60.0°
NAWCAOCAMHAO1120.0°120.0°
NAWCAOCAMHAO2122.6°120.0°
NAWCAOHAO1HAO2123.0°120.0°
NAWCAOCAMCAN58.9°180.0°
NAWCAOCAMHAM1178.9°60.0°
NAWCAOCAMHAM261.0°60.0°
HNAWNAWCAOCAM30.3°0.1°
HNAWNAWCAOHAO1150.4°120.0°
HNAWNAWCAOHAO292.3°120.1°
CAMCAOHAO1HAO2123.0°120.0°
CAOCAMCANHAM1120.0°119.9°
CAOCAMCANHAM2119.9°120.0°
CAOCAMHAM1HAM2119.9°120.0°
CAOCAMCANCB141.1°180.0°
CAOCAMCANHAN198.9°60.1°
CAOCAMCANHAN221.4°60.0°
HAO1CAOCAMCAN61.2°60.0°
HAO1CAOCAMHAM158.9°180.0°
HAO1CAOCAMHAM2179.0°60.0°
HAO2CAOCAMCAN178.5°60.0°
HAO2CAOCAMHAM158.5°60.0°
HAO2CAOCAMHAM261.6°180.0°
CANCAMHAM1HAM2119.9°120.1°
CAMCANCBHAN1120.0°120.0°
CAMCANCBHAN2119.7°120.0°
CAMCANHAN1HAN2119.6°120.1°
CAMCANCBCA120.0°180.0°
CAMCANCBHB10.0°60.0°
CAMCANCBHB2122.4°60.0°
HAM1CAMCANCB21.1°60.1°
HAM1CAMCANHAN1141.1°180.0°
HAM1CAMCANHAN298.5°60.0°
HAM2CAMCANCB99.0°60.0°
HAM2CAMCANHAN121.0°60.0°
HAM2CAMCANHAN2141.3°180.0°
CBCANHAN1HAN2119.7°120.0°
CANCBCAHB1120.0°120.0°
CANCBCAHB2117.7°120.0°
CANCBHB1HB2117.9°120.0°
CANCBCAN44.1°65.0°
CANCBCAC172.0°175.0°
CANCBCAHA70.2°55.0°
HAN1CANCBCA120.1°60.0°
HAN1CANCBHB1119.9°180.0°
HAN1CANCBHB22.4°60.0°
HAN2CANCBCA0.3°60.0°
HAN2CANCBHB1119.7°60.0°
HAN2CANCBHB2118.0°179.9°
CACBHB1HB2117.8°120.0°
CBCANC129.8°120.0°
CBCANHA111.7°120.0°
CBCACHA112.4°120.0°
CBCANHN1125.6°64.0°
CBCANHN2114.5°60.0°
CBCACOAY9.6°80.0°
CBCACO170.0°100.0°
HB1CBCAN75.9°55.0°
HB1CBCAC52.0°65.0°
HB1CBCAHA169.7°175.0°
HB2CBCAN161.8°175.0°
HB2CBCAC70.3°55.0°
HB2CBCAHA47.5°65.0°
NCACHA115.9°120.0°
CANHN1HN2120.0°124.0°
NCACOAY122.1°160.0°
NCACO58.2°20.0°
CCANHN14.2°176.0°
CCANHN2115.8°60.0°
CACOAYO179.6°180.0°
CACOAYPBN158.3°180.0°
HACANHN1122.8°56.0°
HACANHN22.8°180.0°
HACACOAY122.0°40.0°
HACACO57.6°140.0°
COAYPBNO5'62.4°175.0°
COAYPBNOAI177.0°55.0°
COAYPBNOAF59.5°65.0°
OCOAYPBN21.3°0.0°
OAYPBNO5'OAI110.1°120.0°
OAYPBNO5'OAF120.3°120.0°
OAYPBNOAIOAF123.6°120.0°
OAYPBNOAFHOAF111.1°60.0°
OAYPBNO5'C5'73.3°175.0°
O5'PBNOAIOAF130.9°120.0°
O5'PBNOAFHOAF0.7°60.0°
PBNO5'C5'C4'109.8°180.0°
PBNO5'C5'H5'110.2°60.0°
PBNO5'C5'H5'2126.6°60.0°
OAIPBNOAFHOAF129.5°180.0°
OAIPBNO5'C5'36.8°55.0°
OAFPBNO5'C5'166.5°65.0°
O5'C5'C4'H5'1120.0°120.0°
O5'C5'C4'H5'2123.5°120.0°
O5'C5'H5'1H5'2124.2°120.0°
O5'C5'C4'C3'147.4°175.0°
O5'C5'C4'O4'92.7°67.2°
O5'C5'C4'H4'33.9°54.0°
C4'C5'H5'1H5'2124.2°120.0°
C5'C4'C3'O4'121.9°119.4°
C5'C4'C3'H4'111.1°121.0°
C5'C4'O4'H4'112.6°121.1°
C5'C4'O4'C1'175.3°145.9°
C5'C4'C3'O3'74.1°119.9°
C5'C4'C3'C2'173.0°121.5°
C5'C4'C3'H3'46.2°2.6°
H5'1C5'C4'C3'27.4°55.1°
H5'1C5'C4'O4'147.3°172.9°
H5'1C5'C4'H4'86.1°65.9°
H5'2C5'C4'C3'89.0°65.0°
H5'2C5'C4'O4'30.8°52.8°
H5'2C5'C4'H4'157.4°174.0°
C3'C4'O4'H4'115.4°119.5°
C3'C4'O4'C1'52.6°26.5°
C4'C3'O3'C2'105.3°114.8°
C4'C3'O3'H3'126.2°122.5°
C4'C3'C2'H3'123.8°118.7°
C4'C3'O3'HO3'41.0°180.0°
C4'C3'C2'O2'143.7°97.3°
C4'C3'C2'C1'30.9°20.9°
C4'C3'C2'H2'92.2°139.1°
O4'C4'C3'O3'164.0°120.7°
O4'C4'C3'C2'51.1°2.0°
O4'C4'C3'H3'75.7°116.8°
C4'O4'C1'C2'30.0°40.1°
C4'O4'C1'N993.3°78.5°
C4'O4'C1'H1'150.0°158.6°
H4'C4'O4'C1'62.7°92.9°
H4'C4'C3'O3'37.1°1.1°
H4'C4'C3'C2'75.8°117.5°
H4'C4'C3'H3'157.4°123.7°
O4'C1'C2'C3'1.4°37.0°
O4'C1'C2'O2'110.0°81.1°
O4'C1'C2'N9121.1°118.5°
O4'C1'C2'H1'122.2°118.5°
O4'C1'C2'H2'124.9°155.3°
O4'C1'N9H1'122.1°122.9°
O3'C3'C2'H3'119.6°122.6°
O3'C3'C2'O2'99.7°144.0°
O3'C3'C2'C1'147.5°97.8°
O3'C3'C2'H2'24.4°20.4°
C2'C3'O3'HO3'64.4°65.2°
C3'C2'O2'C1'110.6°112.7°
C3'C2'O2'H2'125.9°123.7°
C3'C2'C1'H2'126.3°118.2°
C3'C2'O2'HO2'45.0°61.5°
C3'C2'C1'N9122.5°81.5°
C3'C2'C1'H1'120.8°155.6°
H3'C3'O3'HO3'167.1°57.5°
H3'C3'C2'O2'19.9°21.4°
H3'C3'C2'C1'92.9°139.6°
H3'C3'C2'H2'144.0°102.2°
O2'C2'C1'H2'125.0°123.6°
O2'C2'C1'N9128.8°160.3°
O2'C2'C1'H1'12.1°37.4°
C1'C2'O2'HO2'65.5°174.2°
C2'C1'N9H1'119.9°122.9°
H2'C2'O2'HO2'170.9°62.2°
H2'C2'C1'N93.8°36.8°
H2'C2'C1'H1'112.9°86.2°

224931

PDB entries from 2024-09-11

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