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YLP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
COdoub1.21Å1.23Å
CCAsing1.51Å1.52Å
COAYsing1.34Å1.47Å
NCAsing1.47Å1.45Å
N1C2doub1.32Å1.36ÅAromatic
N1C6sing1.33Å1.36ÅAromatic
C2N3sing1.32Å1.34ÅAromatic
N3C4doub1.33Å1.37ÅAromatic
C4C5sing1.40Å1.47ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
C5C6doub1.41Å1.47ÅAromatic
C5N7sing1.35Å1.33ÅAromatic
C6N6sing1.38Å1.35Å
N7C8doub1.30Å1.36ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
N9C1'sing1.46Å1.47Å
CACBsing1.53Å1.54Å
CBCANsing1.53Å1.54Å
C1'C2'sing1.55Å1.50Å
C1'O4'sing1.44Å1.42Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.55Å1.51Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.50Å
C4'O4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.52Å
C5'O5'sing1.43Å1.42Å
O5'PBNsing1.61Å1.59Å
OADCBAdoub1.21Å1.23Å
OAFPBNsing1.61Å1.51Å
OAIPBNdoub1.48Å1.47Å
CAMCANsing1.53Å1.53Å
CAMCAOsing1.53Å1.52Å
CAONAWsing1.46Å1.46Å
NAWCBAsing1.35Å1.35Å
OAYPBNsing1.61Å1.61Å
CBACBKsing1.51Å1.53Å
CBFCBKsing1.53Å1.51Å
NHNsing1.01Å1.00Å
NHNAsing1.01Å1.00Å
C2H2sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8H8sing1.08Å1.08Å
CAHAsing1.09Å1.10Å
CBHBsing1.09Å1.10Å
CBHBAsing1.09Å1.10Å
C1'H1'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
CAMHAMsing1.09Å1.10Å
CAMHAMAsing1.09Å1.10Å
CANHANsing1.09Å1.10Å
CANHANAsing1.09Å1.10Å
CAOHAOsing1.09Å1.10Å
CAOHAOAsing1.09Å1.10Å
NAWHNAWsing0.97Å1.00Å
CBFHBFsing1.09Å1.10Å
CBFHBFAsing1.09Å1.10Å
CBFHBFBsing1.09Å1.10Å
CBKHBKsing1.09Å1.10Å
CBKHBKAsing1.09Å1.10Å
OAFHAFsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OCCA117.2°120.0°
OCOAY119.2°120.0°
CACOAY123.5°120.0°
CCAN106.4°109.5°
CCACB115.7°109.5°
CCAHA108.3°109.5°
COAYPBN120.9°117.0°
NCACB109.1°109.5°
CANHN109.5°111.0°
CANHNA109.5°111.0°
NCAHA109.2°109.5°
C2N1C6122.6°121.2°
N1C2N3123.9°122.5°
N1C2H2118.1°118.8°
N1C6C5117.0°118.5°
N1C6N6123.6°120.8°
C2N3C4118.9°120.6°
N3C2H2118.0°118.8°
N3C4C5120.2°119.1°
N3C4N9134.7°134.9°
C5C4N9105.0°106.0°
C4C5C6117.3°118.2°
C4C5N7108.1°107.2°
C4N9C8109.0°107.4°
C4N9C1'123.8°126.3°
C6C5N7134.6°134.7°
C5C6N6119.4°120.8°
C5N7C8106.9°109.4°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
N7C8N9110.9°110.0°
N7C8H8124.6°125.0°
C8N9C1'127.1°126.3°
N9C8H8124.5°125.0°
N9C1'C2'113.6°110.6°
N9C1'O4'108.2°110.7°
N9C1'H1'109.6°110.5°
CACBCAN113.0°109.5°
CBCAHA108.1°109.5°
CACBHB108.6°109.4°
CACBHBA108.6°109.5°
CBCANCAM114.2°109.5°
CANCBHB108.6°109.5°
CANCBHBA108.6°109.5°
CBCANHAN108.3°109.5°
CBCANHANA108.3°109.5°
C2'C1'O4'105.9°103.5°
C1'C2'O2'107.5°110.9°
C1'C2'C3'103.7°102.1°
C2'C1'H1'109.2°110.6°
C1'C2'H2'111.2°110.9°
C1'O4'C4'109.4°107.0°
O4'C1'H1'110.3°110.7°
O2'C2'C3'110.5°110.9°
O2'C2'H2'112.4°110.8°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'112.9°110.5°
C2'C3'C4'100.1°104.1°
C3'C2'H2'111.1°110.9°
C2'C3'H3'110.3°110.5°
O3'C3'C4'110.9°110.5°
O3'C3'H3'111.7°110.5°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'104.4°107.3°
C3'C4'C5'113.8°109.9°
C4'C3'H3'110.4°110.6°
C3'C4'H4'108.6°109.9°
O4'C4'C5'111.8°109.8°
O4'C4'H4'109.6°109.9°
C4'C5'O5'109.2°109.5°
C5'C4'H4'108.5°110.0°
C4'C5'H5'109.5°109.5°
C4'C5'H5'A109.6°109.5°
C5'O5'PBN119.2°123.0°
O5'C5'H5'109.6°109.4°
O5'C5'H5'A109.6°109.4°
O5'PBNOAF108.4°109.5°
O5'PBNOAI107.4°109.4°
O5'PBNOAY102.9°109.5°
OADCBANAW123.1°119.9°
OADCBACBK121.2°120.1°
OAFPBNOAI121.7°109.5°
OAFPBNOAY108.6°109.5°
PBNOAFHAF109.5°114.0°
OAIPBNOAY106.2°109.5°
CANCAMCAO113.5°109.5°
CANCAMHAM108.5°109.5°
CANCAMHAMA108.5°109.5°
CAMCANHAN108.3°109.5°
CAMCANHANA108.3°109.4°
CAMCAONAW112.4°109.5°
CAOCAMHAM108.5°109.4°
CAOCAMHAMA108.4°109.5°
CAMCAOHAO108.7°109.4°
CAMCAOHAOA108.7°109.5°
CAONAWCBA124.8°120.0°
NAWCAOHAO108.7°109.5°
NAWCAOHAOA108.7°109.5°
CAONAWHNAW117.6°120.0°
NAWCBACBK115.7°120.0°
CBANAWHNAW117.6°120.0°
CBACBKCBF113.1°109.4°
CBACBKHBK108.5°109.5°
CBACBKHBKA108.5°109.5°
CBKCBFHBF109.5°109.5°
CBKCBFHBFA109.5°109.5°
CBKCBFHBFB109.5°109.5°
CBFCBKHBK108.6°109.5°
CBFCBKHBKA108.6°109.5°
HNNHNA109.5°111.0°
HN6N6HN6A109.5°120.0°
HBCBHBA109.5°109.5°
H5'C5'H5'A109.4°109.5°
HAMCAMHAMA109.5°109.4°
HANCANHANA109.5°109.5°
HAOCAOHAOA109.5°109.4°
HBFCBFHBFA109.5°109.5°
HBFCBFHBFB109.5°109.4°
HBFACBFHBFB109.4°109.5°
HBKCBKHBKA109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OCCAOAY179.0°179.8°
OCCAN57.9°20.0°
OCCACB179.2°100.0°
OCOAYPBN24.8°0.0°
OCCAHA59.3°140.0°
CCANCB125.5°120.0°
CCANHA116.7°120.0°
CCACBHA121.6°120.0°
CCACBCAN155.0°175.0°
CACOAYPBN154.2°179.8°
CCANHN180.0°64.0°
CCANHNA60.0°60.0°
CCACBHB84.5°65.0°
CCACBHBA34.5°55.0°
OAYCCAN121.1°160.3°
OAYCCACB0.2°79.7°
COAYPBNO5'63.8°175.0°
COAYPBNOAF178.6°65.0°
COAYPBNOAI48.9°55.1°
OAYCCAHA121.7°40.3°
NCACBHA118.5°120.0°
NCACBCAN85.2°65.0°
CANHNHNA120.0°124.0°
NCACBHB35.4°55.0°
NCACBHBA154.3°175.0°
N1C2N3H2180.0°180.0°
N1C2N3C41.5°0.0°
C2N1C6C50.2°0.1°
C2N1C6N6179.8°180.0°
C6N1C2N30.5°0.0°
N1C6C5C40.1°0.1°
N1C6C5N6179.7°180.0°
N1C6C5N7179.0°180.0°
C6N1C2H2179.5°180.0°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°180.0°
C2N3C4C51.7°0.0°
C2N3C4N9179.4°180.0°
N3C4C5N9178.4°180.0°
N3C4C5C61.0°0.0°
N3C4C5N7179.8°180.0°
N3C4N9C8179.6°180.0°
N3C4N9C1'3.4°0.0°
C4N3C2H2178.5°180.0°
C4C5C6N7178.9°180.0°
C4C5C6N6179.6°180.0°
C4C5N7C80.7°0.0°
C5C4N9C81.6°0.0°
C5C4N9C1'178.6°179.9°
N9C4C5C6179.4°180.0°
N9C4C5N71.4°0.0°
C4N9C8N71.3°0.0°
C4N9C8C1'176.9°179.9°
C4N9C1'C2'94.8°85.0°
C4N9C1'O4'147.8°160.9°
C4N9C8H8178.8°180.0°
C4N9C1'H1'27.5°37.8°
C6C5N7C8179.7°180.0°
C5C6N6HN6179.7°180.0°
C5C6N6HN6A59.7°0.0°
N7C5C6N60.6°0.0°
C5N7C8N90.3°0.0°
C5N7C8H8179.7°180.0°
C6N6HN6HN6A120.0°180.0°
N7C8N9H8180.0°179.9°
N7C8N9C1'178.1°180.0°
C8N9C1'C2'88.7°95.1°
C8N9C1'O4'28.6°19.0°
C8N9C1'H1'148.9°142.1°
N9C1'C2'O4'118.6°118.6°
N9C1'C2'H1'122.6°122.8°
N9C1'O4'H1'119.9°122.9°
N9C1'C2'O2'147.6°86.2°
N9C1'C2'C3'95.4°155.6°
N9C1'O4'C4'123.7°158.6°
C1'N9C8H81.9°0.1°
N9C1'C2'H2'24.1°37.3°
CACBCANHB120.5°120.0°
CACBCANHBA120.5°120.0°
CACBCANCAM61.6°180.0°
CBCANHN54.5°176.0°
CBCANHNA174.5°60.0°
CACBHBHBA118.4°120.0°
CACBCANHAN177.7°60.0°
CACBCANHANA59.1°60.0°
CBCANCAMHAN120.7°120.0°
CBCANCAMHANA120.7°120.0°
CBCANCAMCAO179.7°180.0°
CANCBCAHA33.4°55.0°
CANCBHBHBA118.4°120.0°
CBCANCAMHAM59.7°60.0°
CBCANCAMHAMA59.1°60.0°
CBCANHANHANA117.9°120.0°
C2'C1'O4'H1'118.0°118.6°
C1'C2'O2'C3'112.5°112.7°
C1'C2'O2'H2'122.8°123.6°
C1'C2'C3'H2'119.6°118.2°
C1'C2'C3'O3'155.5°97.8°
C1'C2'C3'C4'37.5°20.8°
C2'C1'O4'C4'1.6°40.0°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'H3'78.8°139.6°
O4'C1'C2'O2'93.8°155.2°
O4'C1'C2'C3'23.2°37.0°
C1'O4'C4'C3'26.1°26.5°
C1'O4'C4'C5'149.6°145.9°
O4'C1'C2'H2'142.7°81.2°
C1'O4'C4'H4'90.1°93.0°
O2'C2'C3'H2'125.5°123.6°
O2'C2'C3'O3'40.5°20.4°
O2'C2'C3'C4'77.5°139.1°
O2'C2'C1'H1'25.0°36.6°
O2'C2'C3'H3'166.2°102.2°
C2'C3'O3'C4'111.4°114.7°
C2'C3'O3'H3'125.0°122.6°
C2'C3'C4'H3'116.2°118.7°
C2'C3'C4'O4'38.9°2.0°
C2'C3'C4'C5'161.0°121.4°
C3'C2'C1'H1'142.0°81.7°
C3'C2'O2'HO2'67.5°67.3°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'H4'78.0°117.4°
O3'C3'C4'H3'124.3°122.7°
O3'C3'C4'O4'158.3°120.7°
O3'C3'C4'C5'79.5°119.9°
O3'C3'C2'H2'84.9°144.0°
O3'C3'C4'H4'41.4°1.2°
C3'C4'O4'C5'123.5°119.4°
C3'C4'O4'H4'116.2°119.5°
C3'C4'C5'H4'121.0°121.1°
C3'C4'C5'O5'73.0°175.0°
C4'C3'C2'H2'157.1°97.4°
C4'C3'O3'HO3'68.5°176.2°
C3'C4'C5'H5'167.1°55.0°
C3'C4'C5'H5'A47.0°65.0°
O4'C4'C5'H4'120.9°121.1°
O4'C4'C5'O5'45.1°67.2°
C4'O4'C1'H1'116.4°78.5°
O4'C4'C3'H3'77.3°116.6°
O4'C4'C5'H5'74.9°172.9°
O4'C4'C5'H5'A165.0°52.8°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C4'C5'O5'PBN136.0°180.0°
C5'C4'C3'H3'44.8°2.8°
C4'C5'H5'H5'A120.1°120.1°
C5'O5'PBNOAF62.5°65.0°
C5'O5'PBNOAI164.2°55.0°
C5'O5'PBNOAY52.4°175.0°
O5'C5'C4'H4'166.0°53.9°
O5'C5'H5'H5'A120.2°120.0°
O5'PBNOAFOAI125.2°119.9°
O5'PBNOAFOAY111.2°120.0°
O5'PBNOAIOAY109.6°119.9°
PBNO5'C5'H5'104.1°60.0°
PBNO5'C5'H5'A16.0°60.0°
O5'PBNOAFHAF125.2°60.1°
OADCBANAWCAO3.6°0.0°
OADCBANAWCBK179.0°180.0°
OADCBACBKCBF14.8°0.0°
OADCBANAWHNAW176.5°180.0°
OADCBACBKHBK135.4°120.0°
OADCBACBKHBKA105.7°119.9°
OAFPBNOAIOAY124.8°120.1°
OAIPBNOAFHAF0.0°180.0°
CANCAMCAOHAM120.6°120.0°
CANCAMCAOHAMA120.6°120.1°
CANCAMCAONAW102.5°180.0°
CAMCANCBHB59.0°60.0°
CAMCANCBHBA177.9°60.0°
CANCAMHAMHAMA118.2°120.0°
CAMCANHANHANA117.8°120.0°
CANCAMCAOHAO137.0°60.0°
CANCAMCAOHAOA17.9°59.9°
CAMCAONAWHAO120.5°120.0°
CAMCAONAWHAOA120.5°120.0°
CAMCAONAWCBA115.3°180.0°
CAOCAMHAMHAMA118.1°119.9°
CAOCAMCANHAN59.0°60.0°
CAOCAMCANHANA59.6°60.0°
CAMCAOHAOHAOA118.7°119.9°
CAMCAONAWHNAW64.7°0.0°
CAONAWCBAHNAW180.0°180.0°
CAONAWCBACBK175.4°180.0°
NAWCAOCAMHAM18.1°60.0°
NAWCAOCAMHAMA136.9°59.9°
NAWCAOHAOHAOA118.6°120.0°
NAWCBACBKCBF164.2°180.0°
CBANAWCAOHAO5.1°60.0°
CBANAWCAOHAOA124.2°60.0°
NAWCBACBKHBK43.6°60.0°
NAWCBACBKHBKA75.3°60.0°
OAYPBNOAFHAF123.7°60.0°
CBACBKCBFHBK120.5°120.0°
CBACBKCBFHBKA120.5°120.0°
CBKCBANAWHNAW4.6°0.0°
CBACBKCBFHBF180.0°60.0°
CBACBKCBFHBFA60.0°60.0°
CBACBKCBFHBFB60.0°180.0°
CBACBKHBKHBKA118.3°120.0°
CBKCBFHBFHBFA120.0°120.0°
CBKCBFHBFHBFB120.0°120.0°
CBKCBFHBFAHBFB120.0°120.0°
CBFCBKHBKHBKA118.4°120.0°
HNNCAHA63.3°56.0°
HNANCAHA56.7°180.0°
HACACBHB153.9°175.0°
HACACBHBA87.1°65.0°
HBCBCANHAN61.7°179.9°
HBCBCANHANA179.7°59.9°
HBACBCANHAN57.2°60.0°
HBACBCANHANA61.4°180.0°
H1'C1'C2'H2'98.5°160.1°
H2'C2'O2'HO2'57.3°56.4°
H2'C2'C3'H3'40.8°21.4°
H3'C3'O3'HO3'55.1°61.1°
H3'C3'C4'H4'165.8°123.9°
H4'C4'C5'H5'46.0°66.1°
H4'C4'C5'H5'A74.0°173.9°
HAMCAMCANHAN179.6°180.0°
HAMCAMCANHANA61.0°60.0°
HAMCAMCAOHAO102.4°180.0°
HAMCAMCAOHAOA138.5°60.1°
HAMACAMCANHAN61.6°60.0°
HAMACAMCANHANA179.8°180.0°
HAMACAMCAOHAO16.4°60.1°
HAMACAMCAOHAOA102.7°180.0°
HAOCAONAWHNAW174.9°120.0°
HAOACAONAWHNAW55.8°120.0°
HBFCBFHBFAHBFB120.0°120.0°
HBFCBFCBKHBK59.4°NaN°
HBFCBFCBKHBKA59.5°59.9°
HBFACBFCBKHBK179.5°60.0°
HBFACBFCBKHBKA60.6°180.0°
HBFBCBFCBKHBK60.6°60.1°
HBFBCBFCBKHBKA179.5°60.0°

222415

PDB entries from 2024-07-10

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