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SummaryGeometryRelated PDB entries

YLO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C02sing1.51Å1.53Å
C02C03sing1.38Å1.40ÅAromatic
C02C07doub1.38Å1.38ÅAromatic
C03C04doub1.38Å1.39ÅAromatic
C04C05sing1.39Å1.37ÅAromatic
C05C06doub1.39Å1.41ÅAromatic
C05O08sing1.36Å1.40Å
C06C07sing1.38Å1.40ÅAromatic
O08C09sing1.43Å1.39Å
C09C10sing1.53Å1.49Å
C10N11sing1.47Å1.47Å
N11C12sing1.39Å1.38ÅAromatic
N11C19sing1.37Å1.35ÅAromatic
C12C13sing1.39Å1.38ÅAromatic
C12C17doub1.40Å1.34ÅAromatic
C13C14doub1.38Å1.36ÅAromatic
C14C15sing1.39Å1.37ÅAromatic
C15C16doub1.38Å1.38ÅAromatic
C16C17sing1.40Å1.40ÅAromatic
C17N18sing1.36Å1.39ÅAromatic
N18C19doub1.31Å1.33ÅAromatic
C19S20sing1.76Å1.70Å
S20C21sing1.81Å1.77Å
C21C22sing1.53Å1.52Å
C22O23sing1.43Å1.39Å
O23C24sing1.36Å1.38Å
C24C25sing1.39Å1.37ÅAromatic
C24C29doub1.39Å1.38ÅAromatic
C25C26doub1.38Å1.39ÅAromatic
C26C27sing1.38Å1.38ÅAromatic
C27C28doub1.38Å1.37ÅAromatic
C28C29sing1.38Å1.38ÅAromatic
C01H011sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C01H013sing1.09Å1.10Å
C03H03sing1.08Å1.08Å
C07H07sing1.08Å1.08Å
C04H04sing1.08Å1.08Å
C06H06sing1.08Å1.08Å
C09H091sing1.09Å1.10Å
C09H092sing1.09Å1.10Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C13H13sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
C15H15sing1.08Å1.08Å
C16H16sing1.08Å1.08Å
C21H211sing1.09Å1.10Å
C21H212sing1.09Å1.10Å
C22H221sing1.09Å1.10Å
C22H222sing1.09Å1.10Å
C25H25sing1.08Å1.08Å
C29H29sing1.08Å1.08Å
C26H26sing1.08Å1.08Å
C27H27sing1.08Å1.08Å
C28H28sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01C02C03121.7°119.9°
C01C02C07121.4°120.0°
C02C01H011109.5°109.5°
C02C01H012109.5°109.4°
C02C01H013109.4°109.5°
C03C02C07116.9°120.1°
C02C03C04124.2°120.1°
C02C03H03117.9°120.0°
C02C07C06118.9°120.1°
C02C07H07120.6°120.0°
C03C04C05119.5°119.9°
C04C03H03117.9°120.0°
C03C04H04120.2°120.0°
C04C05C06116.7°119.9°
C04C05O08120.0°120.1°
C05C04H04120.3°120.1°
C06C05O08123.3°120.0°
C05C06C07123.7°119.9°
C05C06H06118.2°120.0°
C05O08C09120.0°117.0°
C06C07H07120.6°120.0°
C07C06H06118.1°120.1°
O08C09C10111.6°109.5°
O08C09H091108.9°109.4°
O08C09H092108.9°109.5°
C09C10N11127.9°109.5°
C10C09H091108.9°109.5°
C10C09H092108.9°109.5°
C09C10H101104.7°109.5°
C09C10H102104.7°109.5°
C10N11C12124.6°126.3°
C10N11C19127.9°126.4°
N11C10H101104.7°109.5°
N11C10H102104.7°109.4°
C12N11C19107.4°107.2°
N11C12C13133.9°133.9°
N11C12C17107.6°106.1°
N11C19N18109.3°109.9°
N11C19S20128.4°125.0°
C13C12C17118.5°120.0°
C12C13C14122.9°119.9°
C12C13H13118.6°120.1°
C12C17C16118.9°119.5°
C12C17N18108.0°107.2°
C13C14C15119.4°120.4°
C14C13H13118.5°120.0°
C13C14H14120.3°119.8°
C14C15C16118.0°120.5°
C15C14H14120.3°119.8°
C14C15H15121.0°119.7°
C15C16C17122.3°119.8°
C16C15H15121.0°119.7°
C15C16H16118.9°120.1°
C16C17N18133.1°133.4°
C17C16H16118.9°120.1°
C17N18C19107.6°109.6°
N18C19S20122.2°125.0°
C19S20C21116.3°100.0°
S20C21C22111.4°109.5°
S20C21H211109.0°109.5°
S20C21H212109.0°109.4°
C21C22O23118.5°109.5°
C22C21H211109.0°109.5°
C22C21H212109.0°109.5°
C21C22H221107.2°109.5°
C21C22H222107.2°109.5°
C22O23C24121.2°117.0°
O23C22H221107.2°109.4°
O23C22H222107.2°109.5°
O23C24C25121.7°120.0°
O23C24C29119.7°120.1°
C25C24C29118.6°119.9°
C24C25C26121.1°119.9°
C24C25H25119.5°120.1°
C24C29C28120.6°120.0°
C24C29H29119.7°120.0°
C25C26C27119.6°120.0°
C26C25H25119.5°120.0°
C25C26H26120.2°120.0°
C26C27C28119.6°120.1°
C27C26H26120.2°120.0°
C26C27H27120.2°120.0°
C27C28C29120.6°120.1°
C28C27H27120.2°119.9°
C27C28H28119.7°119.9°
C28C29H29119.7°120.0°
C29C28H28119.7°120.0°
H011C01H012109.5°109.5°
H011C01H013109.5°109.5°
H012C01H013109.5°109.4°
H091C09H092109.5°109.5°
H101C10H102109.5°109.5°
H211C21H212109.5°109.5°
H221C22H222109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01C02C03C07178.6°179.8°
C01C02C03C04179.3°180.0°
C01C02C07C06178.5°179.7°
C02C01H011H012120.0°120.0°
C02C01H011H013120.0°120.0°
C02C01H012H013120.0°120.0°
C01C02C03H030.7°0.0°
C01C02C07H071.5°0.0°
C02C03C04H03180.0°180.0°
C02C03C04C051.5°0.1°
C03C02C07C060.1°0.6°
C03C02C01H01189.2°90.0°
C03C02C01H012150.7°150.0°
C03C02C01H01330.7°30.1°
C03C02C07H07179.9°179.7°
C02C03C04H04178.5°179.9°
C07C02C03C040.7°0.3°
C02C07C06C050.0°0.6°
C02C07C06H07180.0°179.7°
C07C02C01H01189.3°90.3°
C07C02C01H01230.7°29.7°
C07C02C01H013150.7°149.7°
C07C02C03H03179.4°179.7°
C02C07C06H06180.0°179.7°
C03C04C05H04180.0°179.9°
C03C04C05C061.5°0.1°
C03C04C05O08179.2°180.0°
C04C05C06O08179.3°180.0°
C04C05C06C070.9°0.2°
C04C05O08C09179.3°180.0°
C05C04C03H03178.5°179.9°
C04C05C06H06179.1°180.0°
C05C06C07H06180.0°179.7°
C06C05O08C090.1°0.0°
C05C06C07H07180.0°179.7°
C06C05C04H04178.4°180.0°
O08C05C06C07179.8°179.7°
C05O08C09C10103.5°180.0°
O08C05C04H040.9°0.1°
O08C05C06H060.1°0.0°
C05O08C09H09116.8°60.0°
C05O08C09H092136.2°59.9°
O08C09C10H091120.3°120.0°
O08C09C10H092120.3°120.0°
O08C09C10N11155.7°180.0°
O08C09H091H092119.0°119.9°
O08C09C10H10181.8°60.0°
O08C09C10H10233.3°60.0°
C09C10N11H101122.4°120.0°
C09C10N11H102122.4°120.0°
C09C10N11C12136.7°90.0°
C09C10N11C1947.1°90.3°
C10C09H091H092119.0°120.0°
C09C10H101H102111.8°120.0°
C10N11C12C19176.9°179.8°
C10N11C12C132.3°0.0°
C10N11C12C17177.3°180.0°
C10N11C19N18177.0°179.9°
C10N11C19S202.1°0.1°
N11C10C09H09135.4°60.0°
N11C10C09H09283.9°60.0°
N11C10H101H102111.8°119.9°
N11C12C13C17179.5°180.0°
N11C12C13C14179.9°180.0°
N11C12C17C16179.8°180.0°
N11C12C17N180.4°0.0°
C12N11C19N180.3°0.4°
C12N11C19S20178.8°179.7°
C12N11C10H101100.9°30.0°
C12N11C10H10214.3°150.0°
N11C12C13H130.1°0.0°
C19N11C12C13179.1°179.8°
C19N11C12C170.5°0.2°
N11C19N18C170.1°0.4°
N11C19N18S20179.2°179.9°
N11C19S20C21115.5°180.0°
C19N11C10H10175.3°149.7°
C19N11C10H102169.5°29.7°
C12C13C14H13180.0°180.0°
C12C13C14C150.3°0.0°
C13C12C17C160.5°0.0°
C13C12C17N18179.2°180.0°
C12C13C14H14179.7°180.0°
C17C12C13C140.3°0.0°
C12C17C16C150.1°0.1°
C12C17C16N18179.7°180.0°
C12C17N18C190.2°0.2°
C17C12C13H13179.7°180.0°
C12C17C16H16180.0°180.0°
C13C14C15H14180.0°180.0°
C13C14C15C160.8°0.1°
C13C14C15H15179.2°179.9°
C14C15C16H15180.0°179.9°
C14C15C16C170.6°0.1°
C15C14C13H13179.7°180.0°
C14C15C16H16179.4°180.0°
C15C16C17H16180.0°179.9°
C15C16C17N18179.6°179.9°
C16C15C14H14179.2°179.9°
C16C17N18C19179.9°179.8°
C17C16C15H15179.4°180.0°
C17N18C19S20179.2°179.7°
N18C17C16H160.3°0.0°
N18C19S20C2165.4°0.1°
C19S20C21C22147.7°180.0°
C19S20C21H21127.4°59.9°
C19S20C21H21292.0°60.0°
S20C21C22H211120.3°120.0°
S20C21C22H212120.3°119.9°
S20C21C22O23116.9°180.0°
S20C21H211H212119.1°119.9°
S20C21C22H2214.4°60.0°
S20C21C22H222121.8°60.0°
C21C22O23H221121.3°120.0°
C21C22O23H222121.3°120.0°
C21C22O23C2485.6°180.0°
C22C21H211H212119.1°120.1°
C21C22H221H222115.9°120.0°
C22O23C24C2560.5°180.0°
C22O23C24C29121.3°0.3°
O23C22C21H211122.8°60.0°
O23C22C21H2123.4°60.0°
O23C22H221H222115.9°120.0°
O23C24C25C29178.2°179.7°
O23C24C25C26179.2°180.0°
O23C24C29C28179.7°179.7°
C24O23C22H22135.7°60.0°
C24O23C22H222153.1°60.0°
O23C24C25H250.8°0.1°
O23C24C29H290.3°0.0°
C24C25C26H25180.0°179.9°
C24C25C26C270.6°0.0°
C25C24C29C281.4°0.6°
C25C24C29H29178.6°179.7°
C24C25C26H26179.4°180.0°
C29C24C25C261.0°0.3°
C24C29C28C271.5°0.6°
C24C29C28H29180.0°179.7°
C29C24C25H25179.0°179.8°
C24C29C28H28178.5°179.7°
C25C26C27H26180.0°180.0°
C25C26C27C280.7°0.1°
C25C26C27H27179.3°179.9°
C26C27C28H27180.0°179.9°
C26C27C28C291.1°0.4°
C27C26C25H25179.4°180.0°
C26C27C28H28178.8°179.9°
C27C28C29H28180.0°179.7°
C27C28C29H29178.5°179.6°
C28C27C26H26179.3°179.9°
C29C28C27H27178.8°179.8°
H011C01H012H013120.0°120.0°
H03C03C04H041.5°0.1°
H07C07C06H060.0°0.0°
H091C09C10H101157.8°180.0°
H091C09C10H10287.0°60.0°
H092C09C10H10138.5°60.0°
H092C09C10H102153.6°180.0°
H13C13C14H140.4°0.0°
H14C14C15H150.8°0.0°
H15C15C16H160.6°0.1°
H211C21C22H221116.0°180.0°
H211C21C22H2221.5°60.0°
H212C21C22H221124.6°59.9°
H212C21C22H222117.9°180.0°
H25C25C26H260.6°0.0°
H29C29C28H281.5°0.0°
H26C26C27H270.7°0.1°
H27C27C28H281.2°0.1°

249697

PDB entries from 2026-02-25

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