YLL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5	C7	sing	1.43Å	1.44Å
O5	H5	sing	0.97Å	0.95Å
C7	C5	sing	1.54Å	1.55Å
C7	C1	sing	1.53Å	1.54Å
C7	H7	sing	1.10Å	1.11Å
C5	C6	sing	1.53Å	1.52Å
C5	C4	sing	1.54Å	1.55Å
C5	HA	sing	1.10Å	1.11Å
C6	O6	sing	1.41Å	1.43Å
C6	H6C1	sing	1.09Å	1.11Å
C6	H6C2	sing	1.09Å	1.12Å
O6	H6	sing	0.97Å	0.95Å
C4	O4	sing	1.43Å	1.43Å
C4	C3	sing	1.53Å	1.55Å
C4	H4	sing	1.10Å	1.12Å
O4	HB	sing	0.97Å	0.95Å
C3	O3	sing	1.43Å	1.43Å
C3	C2	sing	1.53Å	1.52Å
C3	H3	sing	1.10Å	1.11Å
O3	HC	sing	0.97Å	0.95Å
C2	O2	sing	1.43Å	1.42Å
C2	C1	sing	1.53Å	1.50Å
C2	H2	sing	1.10Å	1.12Å
O2	HD	sing	0.97Å	0.95Å
C1	H1	sing	1.10Å	1.10Å
C1	OXT	sing	1.43Å	1.44Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C7	O5	H5	110.1°	106.3°
O5	C7	C5	110.1°	109.6°
O5	C7	C1	108.6°	108.6°
O5	C7	H7	111.9°	106.2°
C5	C7	C1	115.4°	112.5°
C5	C7	H7	104.6°	110.3°
C7	C5	C6	115.0°	110.7°
C7	C5	C4	109.1°	111.4°
C7	C5	HA	107.1°	108.1°
C1	C7	H7	106.2°	109.5°
C7	C1	C2	112.0°	112.0°
C7	C1	H1	117.3°	110.4°
C7	C1	OXT	95.8°	108.8°
C6	C5	C4	112.8°	111.3°
C6	C5	HA	102.9°	106.2°
C5	C6	O6	110.8°	108.2°
C5	C6	H6C1	111.7°	109.5°
C5	C6	H6C2	111.8°	109.6°
C4	C5	HA	109.6°	108.9°
C5	C4	O4	112.0°	109.9°
C5	C4	C3	106.6°	111.4°
C5	C4	H4	109.4°	108.8°
O6	C6	H6C1	111.7°	109.6°
O6	C6	H6C2	111.7°	109.7°
C6	O6	H6	110.7°	107.2°
H6C1	C6	H6C2	98.6°	110.2°
O4	C4	C3	108.7°	109.5°
O4	C4	H4	107.4°	107.6°
C4	O4	HB	112.0°	106.5°
C3	C4	H4	112.7°	109.5°
C4	C3	O3	113.3°	109.4°
C4	C3	C2	113.9°	111.2°
C4	C3	H3	102.2°	110.6°
O3	C3	C2	104.7°	109.2°
O3	C3	H3	111.9°	107.2°
C3	O3	HC	113.2°	106.4°
C2	C3	H3	111.2°	109.1°
C3	C2	O2	107.6°	109.6°
C3	C2	C1	111.4°	112.1°
C3	C2	H2	109.2°	110.2°
O2	C2	C1	108.6°	108.7°
O2	C2	H2	111.9°	106.4°
C2	O2	HD	108.6°	106.4°
C1	C2	H2	108.2°	109.7°
C2	C1	H1	102.9°	110.8°
C2	C1	OXT	111.8°	108.9°
H1	C1	OXT	117.5°	105.6°
C1	OXT	HXT	109.5°	106.2°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5	C7	C5	C1	123.3°	120.9°
O5	C7	C5	H7	120.4°	116.5°
O5	C7	C1	H7	120.5°	115.5°
O5	C7	C5	C6	58.5°	62.3°
O5	C7	C5	C4	69.4°	173.3°
O5	C7	C5	HA	172.1°	53.6°
O5	C7	C1	C2	75.4°	173.4°
O5	C7	C1	H1	43.2°	49.3°
O5	C7	C1	OXT	168.3°	66.2°
H5	O5	C7	C5	180.0°	144.4°
H5	O5	C7	C1	52.8°	92.4°
H5	O5	C7	H7	64.1°	25.3°
C5	C7	C1	H7	115.4°	123.0°
C7	C5	C6	C4	126.0°	124.5°
C7	C5	C6	HA	116.0°	117.1°
C7	C5	C4	HA	116.9°	119.2°
C7	C5	C6	O6	59.1°	179.5°
C7	C5	C6	H6C1	175.6°	60.0°
C7	C5	C6	H6C2	66.1°	60.9°
C7	C5	C4	O4	176.1°	67.2°
C7	C5	C4	C3	57.3°	54.3°
C7	C5	C4	H4	64.9°	175.2°
C5	C7	C1	C2	48.7°	51.9°
C5	C7	C1	H1	167.3°	72.2°
C5	C7	C1	OXT	67.6°	172.3°
C1	C7	C5	C6	178.2°	176.8°
C1	C7	C5	C4	54.0°	52.4°
C1	C7	C5	HA	64.5°	67.3°
C7	C1	C2	C3	47.9°	53.3°
C7	C1	C2	O2	166.3°	174.5°
C7	C1	C2	H1	126.8°	123.8°
C7	C1	C2	OXT	106.2°	120.3°
C7	C1	C2	H2	72.1°	69.5°
C7	C1	H1	OXT	113.4°	117.4°
C7	C1	OXT	HXT	111.3°	60.9°
H7	C7	C5	C6	61.9°	54.2°
H7	C7	C5	C4	170.3°	70.2°
H7	C7	C5	HA	51.8°	170.2°
H7	C7	C1	C2	164.1°	71.1°
H7	C7	C1	H1	77.3°	164.8°
H7	C7	C1	OXT	47.8°	49.3°
C6	C5	C4	HA	114.0°	116.7°
C5	C6	O6	H6C1	125.3°	119.4°
C5	C6	O6	H6C2	125.3°	119.5°
C5	C6	H6C1	H6C2	117.7°	120.6°
C5	C6	O6	H6	180.0°	178.5°
C6	C5	C4	O4	54.8°	56.9°
C6	C5	C4	C3	173.6°	178.4°
C6	C5	C4	H4	64.1°	60.7°
C4	C5	C6	O6	66.9°	55.0°
C4	C5	C6	H6C1	58.4°	64.5°
C4	C5	C6	H6C2	167.9°	174.5°
C5	C4	O4	C3	117.6°	122.7°
C5	C4	O4	H4	120.2°	118.3°
C5	C4	C3	H4	120.1°	120.5°
C5	C4	O4	HB	180.0°	50.1°
C5	C4	C3	O3	178.8°	64.9°
C5	C4	C3	C2	61.7°	55.8°
C5	C4	C3	H3	58.3°	177.2°
HA	C5	C6	O6	175.1°	63.4°
HA	C5	C6	H6C1	59.6°	177.1°
HA	C5	C6	H6C2	49.9°	56.2°
HA	C5	C4	O4	59.2°	173.6°
HA	C5	C4	C3	59.6°	64.9°
HA	C5	C4	H4	178.2°	56.0°
O6	C6	H6C1	H6C2	117.6°	120.8°
H6C1	C6	O6	H6	54.7°	59.1°
H6C2	C6	O6	H6	54.7°	62.0°
O4	C4	C3	H4	118.9°	117.8°
O4	C4	C3	O3	57.9°	173.3°
O4	C4	C3	C2	177.3°	66.0°
O4	C4	C3	H3	62.7°	55.4°
C3	C4	O4	HB	62.4°	172.8°
C4	C3	O3	C2	124.7°	121.9°
C4	C3	O3	H3	114.8°	120.0°
C4	C3	C2	H3	114.8°	122.3°
C4	C3	O3	HC	180.0°	22.4°
C4	C3	C2	O2	176.4°	176.1°
C4	C3	C2	C1	57.5°	55.3°
C4	C3	C2	H2	62.0°	67.1°
H4	C4	O4	HB	59.8°	68.3°
H4	C4	C3	O3	61.1°	55.5°
H4	C4	C3	C2	58.4°	176.3°
H4	C4	C3	H3	178.4°	62.3°
O3	C3	C2	H3	121.0°	116.9°
O3	C3	C2	O2	59.4°	55.3°
O3	C3	C2	C1	178.3°	65.5°
O3	C3	C2	H2	62.3°	172.1°
C2	C3	O3	HC	55.3°	99.6°
C3	C2	O2	C1	120.7°	122.8°
C3	C2	O2	H2	119.9°	119.2°
C3	C2	C1	H2	120.0°	122.8°
C3	C2	O2	HD	59.3°	16.6°
C3	C2	C1	H1	174.8°	70.6°
C3	C2	C1	OXT	58.3°	173.6°
H3	C3	O3	HC	65.2°	142.4°
H3	C3	C2	O2	61.6°	61.6°
H3	C3	C2	C1	57.4°	177.6°
H3	C3	C2	H2	176.8°	55.2°
O2	C2	C1	H2	121.7°	115.9°
O2	C2	C1	H1	66.9°	50.7°
O2	C2	C1	OXT	60.1°	65.1°
C1	C2	O2	HD	180.0°	106.2°
C2	C1	H1	OXT	123.2°	117.9°
C2	C1	OXT	HXT	132.2°	61.4°
H2	C2	O2	HD	60.6°	135.7°
H2	C2	C1	H1	54.8°	166.7°
H2	C2	C1	OXT	178.2°	50.8°
H1	C1	OXT	HXT	13.6°	179.5°

Definition date:	2006-11-29
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB