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YLB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
COdoub1.21Å1.22Å
CCAsing1.51Å1.50Å
COAYsing1.34Å1.46Å
NCAsing1.47Å1.46Å
N1C2doub1.32Å1.36ÅAromatic
N1C6sing1.33Å1.36ÅAromatic
C2N3sing1.32Å1.35ÅAromatic
C3CBFsing1.53Å1.51Å
N3C4doub1.33Å1.36ÅAromatic
C4C5sing1.40Å1.48ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
C5C6doub1.40Å1.48ÅAromatic
C5N7sing1.35Å1.35ÅAromatic
C6N6sing1.38Å1.35Å
N7C8doub1.30Å1.36ÅAromatic
C8N9sing1.36Å1.37ÅAromatic
N9C1'sing1.47Å1.48Å
CACBsing1.53Å1.55Å
CBCANsing1.53Å1.53Å
C1'C2'sing1.55Å1.49Å
C1'O4'sing1.44Å1.43Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.55Å1.51Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.51Å
C4'O4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.51Å
C5'O5'sing1.43Å1.41Å
O5'PBNsing1.61Å1.59Å
OADCBAdoub1.21Å1.24Å
OAFPBNdoub1.48Å1.48Å
OAIPBNsing1.61Å1.52Å
CAMCANsing1.53Å1.53Å
CAMCAOsing1.53Å1.51Å
CAONAWsing1.46Å1.45Å
NAWCBAsing1.35Å1.34Å
OAYPBNsing1.61Å1.60Å
CBACBKsing1.51Å1.52Å
CBFCBKsing1.53Å1.52Å
NHNsing1.01Å1.00Å
NHNAsing1.01Å1.00Å
C2H2sing1.08Å1.08Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
C3H3Bsing1.09Å1.10Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8H8sing1.08Å1.08Å
CAHAsing1.09Å1.10Å
CBHBsing1.09Å1.10Å
CBHBAsing1.09Å1.10Å
C1'H1'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
CAMHAMsing1.09Å1.10Å
CAMHAMAsing1.09Å1.10Å
CANHANsing1.09Å1.10Å
CANHANAsing1.09Å1.10Å
CAOHAOsing1.09Å1.10Å
CAOHAOAsing1.09Å1.10Å
NAWHNAWsing0.97Å1.00Å
CBFHBFsing1.09Å1.10Å
CBFHBFAsing1.09Å1.10Å
CBKHBKsing1.09Å1.10Å
CBKHBKAsing1.09Å1.10Å
OAIHAIsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OCCA119.8°120.0°
OCOAY120.8°120.0°
CACOAY119.5°120.0°
CCAN107.2°109.4°
CCACB110.6°109.5°
CCAHA107.8°109.5°
COAYPBN123.4°117.0°
NCACB115.4°109.5°
CANHN109.5°111.0°
CANHNA109.5°111.0°
NCAHA108.4°109.5°
C2N1C6123.1°121.1°
N1C2N3123.4°122.5°
N1C2H2118.3°118.8°
N1C6C5117.2°118.5°
N1C6N6122.0°120.7°
C2N3C4119.1°120.6°
N3C2H2118.3°118.7°
C3CBFCBK109.8°109.5°
CBFC3H3109.5°109.5°
CBFC3H3A109.5°109.5°
CBFC3H3B109.5°109.4°
C3CBFHBF109.4°109.4°
C3CBFHBFA109.4°109.5°
N3C4C5120.8°119.0°
N3C4N9133.6°134.9°
C5C4N9105.6°106.0°
C4C5C6116.5°118.2°
C4C5N7107.5°107.2°
C4N9C8109.2°107.4°
C4N9C1'122.2°126.3°
C6C5N7136.1°134.7°
C5C6N6120.9°120.8°
C5N7C8107.1°109.4°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°119.9°
N7C8N9110.6°110.0°
N7C8H8124.7°125.0°
C8N9C1'128.6°126.3°
N9C8H8124.7°125.0°
N9C1'C2'112.7°110.6°
N9C1'O4'109.7°110.6°
N9C1'H1'109.4°110.5°
CACBCAN117.0°109.5°
CBCAHA107.2°109.5°
CACBHB107.6°109.5°
CACBHBA107.6°109.4°
CBCANCAM109.7°109.5°
CANCBHB107.5°109.5°
CANCBHBA107.5°109.5°
CBCANHAN109.4°109.5°
CBCANHANA109.4°109.5°
C2'C1'O4'105.8°103.5°
C1'C2'O2'107.7°110.9°
C1'C2'C3'103.3°102.1°
C2'C1'H1'109.2°110.6°
C1'C2'H2'111.6°110.9°
C1'O4'C4'109.3°107.0°
O4'C1'H1'110.1°110.7°
O2'C2'C3'109.8°110.9°
O2'C2'H2'112.6°110.8°
C2'O2'HO2'109.5°113.9°
C2'C3'O3'114.7°110.5°
C2'C3'C4'99.9°104.2°
C3'C2'H2'111.3°111.0°
C2'C3'H3'109.9°110.5°
O3'C3'C4'110.6°110.5°
O3'C3'H3'111.1°110.4°
C3'O3'HO3'109.5°113.9°
C3'C4'O4'104.2°107.3°
C3'C4'C5'111.5°109.9°
C4'C3'H3'110.0°110.6°
C3'C4'H4'109.1°109.9°
O4'C4'C5'112.9°109.9°
O4'C4'H4'110.0°109.9°
C4'C5'O5'108.2°109.5°
C5'C4'H4'109.0°110.0°
C4'C5'H5'109.8°109.5°
C4'C5'H5'A109.8°109.5°
C5'O5'PBN120.2°123.0°
O5'C5'H5'109.8°109.4°
O5'C5'H5'A109.8°109.4°
O5'PBNOAF108.2°109.5°
O5'PBNOAI108.8°109.5°
O5'PBNOAY105.2°109.4°
OADCBANAW123.6°120.0°
OADCBACBK122.2°120.0°
OAFPBNOAI120.4°109.5°
OAFPBNOAY108.1°109.5°
OAIPBNOAY105.1°109.4°
PBNOAIHAI109.5°114.0°
CANCAMCAO112.4°109.5°
CANCAMHAM108.7°109.5°
CANCAMHAMA108.7°109.4°
CAMCANHAN109.4°109.5°
CAMCANHANA109.4°109.5°
CAMCAONAW110.6°109.5°
CAOCAMHAM108.7°109.4°
CAOCAMHAMA108.7°109.5°
CAMCAOHAO109.2°109.4°
CAMCAOHAOA109.2°109.5°
CAONAWCBA123.0°120.0°
NAWCAOHAO109.2°109.5°
NAWCAOHAOA109.2°109.5°
CAONAWHNAW118.5°120.0°
NAWCBACBK114.2°120.0°
CBANAWHNAW118.5°120.0°
CBACBKCBF112.2°109.5°
CBACBKHBK108.8°109.5°
CBACBKHBKA108.8°109.4°
CBKCBFHBF109.4°109.5°
CBKCBFHBFA109.4°109.5°
CBFCBKHBK108.8°109.5°
CBFCBKHBKA108.8°109.5°
HNNHNA109.5°111.0°
H3C3H3A109.5°109.5°
H3C3H3B109.5°109.5°
H3AC3H3B109.4°109.5°
HN6N6HN6A109.4°120.0°
HBCBHBA109.5°109.5°
H5'C5'H5'A109.4°109.5°
HAMCAMHAMA109.5°109.5°
HANCANHANA109.5°109.4°
HAOCAOHAOA109.5°109.4°
HBFCBFHBFA109.4°109.5°
HBKCBKHBKA109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OCCAOAY179.6°179.8°
OCCAN77.4°20.1°
OCCACB156.0°100.0°
OCOAYPBN27.2°0.1°
OCCAHA39.1°140.0°
CCANCB123.7°120.0°
CCANHA116.0°120.0°
CCACBHA117.3°120.0°
CCACBCAN123.2°175.0°
CACOAYPBN153.3°179.7°
CCANHN180.0°60.0°
CCANHNA60.0°63.9°
CCACBHB115.7°55.0°
CCACBHBA2.1°65.0°
OAYCCAN102.2°159.8°
OAYCCACB24.4°80.2°
COAYPBNO5'61.2°175.0°
COAYPBNOAF54.2°55.0°
COAYPBNOAI176.0°65.1°
OAYCCAHA141.4°39.8°
NCACBHA120.9°120.0°
NCACBCAN1.3°65.0°
CANHNHNA120.0°124.0°
NCACBHB122.4°175.0°
NCACBHBA119.7°55.0°
N1C2N3H2180.0°179.9°
N1C2N3C40.8°0.1°
C2N1C6C50.0°0.0°
C2N1C6N6180.0°180.0°
C6N1C2N30.5°0.0°
N1C6C5C40.1°0.0°
N1C6C5N6179.9°180.0°
N1C6C5N7179.6°180.0°
C6N1C2H2179.5°180.0°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°180.0°
C2N3C4C50.7°0.1°
C2N3C4N9179.5°179.9°
C3CBFCBKCBA176.3°180.0°
C3CBFCBKHBF120.1°119.9°
C3CBFCBKHBFA120.1°120.1°
CBFC3H3H3A120.0°120.0°
CBFC3H3H3B120.0°119.9°
CBFC3H3AH3B120.0°120.0°
C3CBFHBFHBFA119.8°120.0°
C3CBFCBKHBK55.9°59.9°
C3CBFCBKHBKA63.3°60.1°
N3C4C5N9179.1°180.0°
N3C4C5C60.2°0.0°
N3C4C5N7179.4°180.0°
N3C4N9C8179.6°180.0°
N3C4N9C1'2.7°0.0°
C4N3C2H2179.2°180.0°
C4C5C6N7179.6°180.0°
C4C5C6N6179.9°180.0°
C4C5N7C80.1°0.0°
C5C4N9C80.6°0.0°
C5C4N9C1'178.4°180.0°
N9C4C5C6179.4°180.0°
N9C4C5N70.3°0.0°
C4N9C8N70.7°0.0°
C4N9C8C1'177.6°179.9°
C4N9C1'C2'93.7°85.0°
C4N9C1'O4'148.8°160.9°
C4N9C8H8179.3°180.0°
C4N9C1'H1'28.0°37.9°
C6C5N7C8179.7°180.0°
C5C6N6HN6180.0°180.0°
C5C6N6HN6A60.1°0.0°
N7C5C6N60.3°0.0°
C5N7C8N90.5°0.0°
C5N7C8H8179.5°180.0°
C6N6HN6HN6A120.0°180.0°
N7C8N9H8180.0°180.0°
N7C8N9C1'178.3°180.0°
C8N9C1'C2'89.0°95.0°
C8N9C1'O4'28.6°19.1°
C8N9C1'H1'149.3°142.1°
N9C1'C2'O4'119.8°118.5°
N9C1'C2'H1'121.8°122.8°
N9C1'O4'H1'120.4°122.9°
N9C1'C2'O2'150.3°86.3°
N9C1'C2'C3'93.5°155.5°
N9C1'O4'C4'120.3°158.6°
C1'N9C8H81.7°0.0°
N9C1'C2'H2'26.2°37.3°
CACBCANHB121.1°120.0°
CACBCANHBA121.1°119.9°
CACBCANCAM107.1°NaN°
CBCANHN56.3°60.0°
CBCANHNA63.7°176.1°
CACBHBHBA116.6°119.9°
CACBCANHAN132.8°59.9°
CACBCANHANA12.9°60.0°
CBCANCAMHAN120.0°120.1°
CBCANCAMHANA120.0°120.0°
CBCANCAMCAO164.5°180.0°
CANCBCAHA119.5°55.0°
CANCBHBHBA116.6°120.0°
CBCANCAMHAM44.1°60.0°
CBCANCAMHAMA75.0°60.0°
CBCANHANHANA119.9°120.0°
C2'C1'O4'H1'117.8°118.6°
C1'C2'O2'C3'111.9°112.7°
C1'C2'O2'H2'123.5°123.6°
C1'C2'C3'H2'119.9°118.2°
C1'C2'C3'O3'157.8°97.8°
C1'C2'C3'C4'39.5°20.9°
C2'C1'O4'C4'1.5°40.0°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'H3'76.1°139.7°
O4'C1'C2'O2'89.9°155.2°
O4'C1'C2'C3'26.3°37.0°
C1'O4'C4'C3'24.1°26.5°
C1'O4'C4'C5'145.3°145.9°
O4'C1'C2'H2'146.0°81.2°
C1'O4'C4'H4'92.6°92.9°
O2'C2'C3'H2'125.4°123.6°
O2'C2'C3'O3'43.1°20.4°
O2'C2'C3'C4'75.2°139.1°
O2'C2'C1'H1'28.5°36.6°
O2'C2'C3'H3'169.2°102.1°
C2'C3'O3'C4'112.1°114.8°
C2'C3'O3'H3'125.4°122.6°
C2'C3'C4'H3'115.5°118.8°
C2'C3'C4'O4'38.9°2.0°
C2'C3'C4'C5'161.1°121.5°
C3'C2'C1'H1'144.7°81.6°
C3'C2'O2'HO2'68.1°67.2°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'H4'78.5°117.4°
O3'C3'C4'H3'123.1°122.6°
O3'C3'C4'O4'160.3°120.7°
O3'C3'C4'C5'77.6°119.9°
O3'C3'C2'H2'82.3°144.0°
O3'C3'C4'H4'42.8°1.3°
C3'C4'O4'C5'121.1°119.5°
C3'C4'O4'H4'116.8°119.4°
C3'C4'C5'H4'120.5°121.1°
C3'C4'C5'O5'68.4°175.0°
C4'C3'C2'H2'159.4°97.3°
C4'C3'O3'HO3'67.9°176.3°
C3'C4'C5'H5'171.8°55.0°
C3'C4'C5'H5'A51.4°65.0°
O4'C4'C5'H4'122.6°121.1°
O4'C4'C5'O5'48.6°67.1°
C4'O4'C1'H1'119.3°78.5°
O4'C4'C3'H3'76.6°116.7°
O4'C4'C5'H5'71.3°172.9°
O4'C4'C5'H5'A168.4°52.8°
C4'C5'O5'H5'119.8°120.0°
C4'C5'O5'H5'A119.8°120.0°
C4'C5'O5'PBN147.4°180.0°
C5'C4'C3'H3'45.5°2.7°
C4'C5'H5'H5'A120.6°120.0°
C5'O5'PBNOAF175.7°55.0°
C5'O5'PBNOAI51.9°65.0°
C5'O5'PBNOAY60.4°175.0°
O5'C5'C4'H4'171.1°53.9°
O5'C5'H5'H5'A120.6°120.0°
O5'PBNOAFOAI125.9°120.0°
O5'PBNOAFOAY113.5°120.0°
O5'PBNOAIOAY112.3°119.9°
PBNO5'C5'H5'92.8°60.0°
PBNO5'C5'H5'A27.6°60.0°
O5'PBNOAIHAI125.6°60.0°
OADCBANAWCAO1.3°0.0°
OADCBANAWCBK179.3°180.0°
OADCBACBKCBF28.6°0.0°
OADCBANAWHNAW178.7°180.0°
OADCBACBKHBK149.1°120.0°
OADCBACBKHBKA91.8°120.0°
OAFPBNOAIOAY122.1°120.0°
OAFPBNOAIHAI0.0°180.0°
CANCAMCAOHAM120.4°120.0°
CANCAMCAOHAMA120.4°120.0°
CANCAMCAONAW101.3°180.0°
CAMCANCBHB14.0°60.0°
CAMCANCBHBA131.8°60.1°
CANCAMHAMHAMA118.7°120.0°
CAMCANHANHANA119.9°120.0°
CANCAMCAOHAO138.5°60.0°
CANCAMCAOHAOA18.9°60.0°
CAMCAONAWHAO120.1°120.0°
CAMCAONAWHAOA120.2°120.0°
CAMCAONAWCBA84.9°180.0°
CAOCAMHAMHAMA118.7°120.0°
CAOCAMCANHAN75.4°60.0°
CAOCAMCANHANA44.5°60.0°
CAMCAOHAOHAOA119.5°120.0°
CAMCAONAWHNAW95.1°0.1°
CAONAWCBAHNAW180.0°179.9°
CAONAWCBACBK178.0°179.9°
NAWCAOCAMHAM19.1°60.1°
NAWCAOCAMHAMA138.3°60.0°
NAWCAOHAOHAOA119.5°120.0°
NAWCBACBKCBF152.1°180.0°
CBANAWCAOHAO35.3°60.1°
CBANAWCAOHAOA154.9°59.9°
NAWCBACBKHBK31.6°60.0°
NAWCBACBKHBKA87.5°60.0°
OAYPBNOAIHAI122.1°60.0°
CBACBKCBFHBK120.4°120.1°
CBACBKCBFHBKA120.4°119.9°
CBKCBANAWHNAW2.0°0.0°
CBACBKCBFHBF56.2°60.1°
CBACBKCBFHBFA63.6°59.9°
CBACBKHBKHBKA118.7°119.9°
CBKCBFC3H3180.0°180.0°
CBKCBFC3H3A60.0°60.0°
CBKCBFC3H3B60.0°60.0°
CBKCBFHBFHBFA119.9°120.0°
CBFCBKHBKHBKA118.8°120.0°
HNNCAHA64.0°180.0°
HNANCAHA176.0°56.0°
H3C3H3AH3B120.0°120.0°
H3C3CBFHBF59.9°60.0°
H3C3CBFHBFA59.9°59.9°
H3AC3CBFHBF60.1°60.0°
H3AC3CBFHBFA179.9°179.9°
H3BC3CBFHBF180.0°180.0°
H3BC3CBFHBFA60.1°60.0°
HACACBHB1.5°65.0°
HACACBHBA119.4°175.0°
HBCBCANHAN106.1°180.0°
HBCBCANHANA134.0°60.0°
HBACBCANHAN11.8°60.0°
HBACBCANHANA108.2°179.9°
H1'C1'C2'H2'95.6°160.1°
H2'C2'O2'HO2'56.5°56.4°
H2'C2'C3'H3'43.8°21.4°
H3'C3'O3'HO3'54.5°61.1°
H3'C3'C4'H4'166.0°123.8°
H4'C4'C5'H5'51.3°66.1°
H4'C4'C5'H5'A69.0°173.9°
HAMCAMCANHAN164.1°179.9°
HAMCAMCANHANA75.9°60.0°
HAMCAMCAOHAO101.0°180.0°
HAMCAMCAOHAOA139.3°60.0°
HAMACAMCANHAN45.0°60.0°
HAMACAMCANHANA165.0°180.0°
HAMACAMCAOHAO18.1°60.0°
HAMACAMCAOHAOA101.6°179.9°
HAOCAONAWHNAW144.7°120.0°
HAOACAONAWHNAW25.0°120.0°
HBFCBFCBKHBK64.2°60.0°
HBFCBFCBKHBKA176.6°180.0°
HBFACBFCBKHBK175.9°NaN°
HBFACBFCBKHBKA56.8°60.0°

222624

PDB entries from 2024-07-17

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