YL4

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CAZ	OBA	sing	1.44Å	1.45Å
CAZ	CAY	sing	1.55Å	1.56Å
OBA	CAV	sing	1.36Å	1.37Å
CAV	CAW	sing	1.39Å	1.34Å	Aromatic
CAV	CAU	doub	1.39Å	1.38Å	Aromatic
CAY	CAU	sing	1.52Å	1.40Å
CAW	CAX	doub	1.38Å	1.39Å	Aromatic
CAU	CAT	sing	1.38Å	1.36Å	Aromatic
CAX	CAS	sing	1.38Å	1.41Å	Aromatic
CAT	CAS	doub	1.38Å	1.41Å	Aromatic
CAS	CAR	sing	1.51Å	1.41Å
CAR	NAQ	sing	1.46Å	1.50Å
CAR	PBB	sing	1.82Å	1.92Å
NAQ	C4	sing	1.38Å	1.35Å
OBC	PBB	doub	1.48Å	1.71Å
C4	N3	doub	1.32Å	1.36Å	Aromatic
C4	C5	sing	1.42Å	1.37Å	Aromatic
N3	C2	sing	1.32Å	1.39Å	Aromatic
OBE	PBB	sing	1.61Å	1.67Å
CAL	C5	sing	1.45Å	1.39Å	Aromatic
CAL	CAH	doub	1.33Å	1.36Å	Aromatic
C5	C6	doub	1.40Å	1.36Å	Aromatic
PBB	OBD	sing	1.61Å	1.68Å
C2	N1	doub	1.31Å	1.40Å	Aromatic
CAD	CAC	doub	1.38Å	1.39Å	Aromatic
CAD	CAE	sing	1.40Å	1.40Å	Aromatic
CAH	CAE	sing	1.48Å	1.39Å
CAH	SAI	sing	1.75Å	1.69Å	Aromatic
CAC	CAB	sing	1.38Å	1.39Å	Aromatic
C6	N1	sing	1.34Å	1.36Å	Aromatic
C6	SAI	sing	1.76Å	1.70Å	Aromatic
CAE	CAF	doub	1.40Å	1.43Å	Aromatic
CAB	CAA	sing	1.51Å	1.42Å
CAB	CAG	doub	1.38Å	1.40Å	Aromatic
CAF	CAG	sing	1.38Å	1.41Å	Aromatic
CAT	H1	sing	1.08Å	1.08Å
CAY	H2	sing	1.09Å	1.10Å
CAY	H3	sing	1.09Å	1.10Å
CAZ	H4	sing	1.09Å	1.10Å
CAZ	H5	sing	1.09Å	1.10Å
CAW	H6	sing	1.08Å	1.08Å
CAX	H7	sing	1.08Å	1.08Å
CAR	H8	sing	1.09Å	1.10Å
OBD	H9	sing	0.97Å	0.95Å
OBE	H10	sing	0.97Å	0.95Å
NAQ	H11	sing	0.97Å	1.00Å
C2	H12	sing	1.08Å	1.08Å
CAL	H13	sing	1.08Å	1.08Å
CAD	H14	sing	1.08Å	1.08Å
CAC	H15	sing	1.08Å	1.08Å
CAA	H16	sing	1.09Å	1.10Å
CAA	H17	sing	1.09Å	1.10Å
CAA	H18	sing	1.09Å	1.10Å
CAG	H19	sing	1.08Å	1.08Å
CAF	H20	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OBA	CAZ	CAY	103.9°	102.8°
CAZ	OBA	CAV	102.4°	109.3°
OBA	CAZ	H4	110.8°	110.8°
OBA	CAZ	H5	110.9°	110.8°
CAZ	CAY	CAU	101.7°	101.9°
CAZ	CAY	H2	111.4°	110.9°
CAZ	CAY	H3	111.4°	111.0°
CAY	CAZ	H4	110.8°	110.7°
CAY	CAZ	H5	110.8°	110.7°
OBA	CAV	CAW	125.9°	129.9°
OBA	CAV	CAU	114.4°	111.3°
CAW	CAV	CAU	119.7°	118.9°
CAV	CAW	CAX	120.8°	120.2°
CAV	CAW	H6	119.6°	119.9°
CAV	CAU	CAY	107.8°	107.1°
CAV	CAU	CAT	122.2°	120.8°
CAY	CAU	CAT	130.1°	132.2°
CAU	CAY	H2	111.4°	111.0°
CAU	CAY	H3	111.4°	111.0°
CAW	CAX	CAS	120.0°	120.3°
CAX	CAW	H6	119.6°	119.9°
CAW	CAX	H7	120.0°	119.9°
CAU	CAT	CAS	119.3°	120.0°
CAU	CAT	H1	120.3°	120.0°
CAX	CAS	CAT	118.1°	119.8°
CAX	CAS	CAR	119.8°	120.1°
CAS	CAX	H7	120.0°	119.8°
CAT	CAS	CAR	122.1°	120.1°
CAS	CAT	H1	120.3°	120.0°
CAS	CAR	NAQ	109.8°	109.5°
CAS	CAR	PBB	110.2°	109.4°
CAS	CAR	H8	112.5°	109.5°
NAQ	CAR	PBB	106.9°	109.5°
CAR	NAQ	C4	125.2°	120.0°
NAQ	CAR	H8	111.0°	109.5°
CAR	NAQ	H11	105.4°	120.0°
CAR	PBB	OBC	104.7°	109.5°
CAR	PBB	OBE	109.0°	109.4°
CAR	PBB	OBD	110.3°	109.5°
PBB	CAR	H8	106.3°	109.5°
NAQ	C4	N3	119.4°	120.5°
NAQ	C4	C5	117.4°	120.5°
C4	NAQ	H11	105.4°	120.0°
OBC	PBB	OBE	117.0°	109.5°
OBC	PBB	OBD	106.8°	109.5°
N3	C4	C5	123.2°	119.0°
C4	N3	C2	120.0°	121.2°
C4	C5	CAL	130.9°	130.4°
C4	C5	C6	116.5°	117.5°
N3	C2	N1	117.0°	122.2°
N3	C2	H12	121.5°	118.9°
OBE	PBB	OBD	109.0°	109.5°
PBB	OBE	H10	109.5°	114.0°
C5	CAL	CAH	117.2°	114.6°
CAL	C5	C6	112.6°	112.1°
C5	CAL	H13	121.4°	122.7°
CAL	CAH	CAE	128.9°	124.4°
CAL	CAH	SAI	105.5°	111.2°
CAH	CAL	H13	121.4°	122.7°
C5	C6	N1	122.4°	119.1°
C5	C6	SAI	107.7°	109.7°
PBB	OBD	H9	109.5°	114.0°
C2	N1	C6	121.0°	121.1°
N1	C2	H12	121.5°	118.9°
CAC	CAD	CAE	122.0°	119.8°
CAD	CAC	CAB	122.2°	120.1°
CAC	CAD	H14	119.0°	120.1°
CAD	CAC	H15	118.9°	119.9°
CAD	CAE	CAH	119.3°	120.1°
CAD	CAE	CAF	115.3°	119.7°
CAE	CAD	H14	119.1°	120.1°
CAE	CAH	SAI	125.6°	124.4°
CAH	CAE	CAF	125.4°	120.1°
CAH	SAI	C6	96.9°	92.3°
CAC	CAB	CAA	118.4°	119.8°
CAC	CAB	CAG	117.9°	120.3°
CAB	CAC	H15	118.9°	119.9°
N1	C6	SAI	129.9°	131.1°
CAE	CAF	CAG	122.9°	119.9°
CAE	CAF	H20	118.6°	120.1°
CAA	CAB	CAG	123.7°	119.8°
CAB	CAA	H16	109.5°	109.5°
CAB	CAA	H17	109.5°	109.5°
CAB	CAA	H18	109.5°	109.5°
CAB	CAG	CAF	119.8°	120.1°
CAB	CAG	H19	120.1°	119.9°
CAF	CAG	H19	120.1°	120.0°
CAG	CAF	H20	118.6°	120.1°
H2	CAY	H3	109.5°	110.8°
H4	CAZ	H5	109.5°	110.8°
H16	CAA	H17	109.5°	109.5°
H16	CAA	H18	109.5°	109.4°
H17	CAA	H18	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OBA	CAZ	CAY	H4	119.1°	118.3°
OBA	CAZ	CAY	H5	119.1°	118.4°
CAZ	OBA	CAV	CAW	160.1°	161.2°
CAZ	OBA	CAV	CAU	18.7°	18.8°
OBA	CAZ	CAY	CAU	30.3°	25.3°
OBA	CAZ	CAY	H2	149.0°	143.5°
OBA	CAZ	CAY	H3	88.4°	92.9°
OBA	CAZ	H4	H5	122.6°	123.4°
CAY	CAZ	OBA	CAV	29.0°	27.6°
CAZ	CAY	CAU	CAV	19.3°	15.5°
CAZ	CAY	CAU	H2	118.8°	118.1°
CAZ	CAY	CAU	H3	118.7°	118.2°
CAZ	CAY	CAU	CAT	162.3°	164.2°
CAZ	CAY	H2	H3	123.6°	123.7°
CAY	CAZ	H4	H5	122.6°	123.3°
OBA	CAV	CAW	CAU	178.8°	180.0°
OBA	CAV	CAU	CAY	1.5°	0.8°
OBA	CAV	CAW	CAX	179.1°	179.5°
OBA	CAV	CAU	CAT	179.9°	179.4°
CAV	OBA	CAZ	H4	90.1°	90.7°
CAV	OBA	CAZ	H5	148.1°	146.0°
OBA	CAV	CAW	H6	0.8°	0.5°
CAW	CAV	CAU	CAY	179.6°	179.2°
CAV	CAW	CAX	H6	180.0°	180.0°
CAW	CAV	CAU	CAT	1.1°	0.6°
CAV	CAW	CAX	CAS	0.3°	0.1°
CAV	CAW	CAX	H7	179.7°	180.0°
CAV	CAU	CAY	CAT	178.3°	179.7°
CAU	CAV	CAW	CAX	0.4°	0.4°
CAV	CAU	CAT	CAS	1.2°	0.3°
CAV	CAU	CAT	H1	178.8°	179.4°
CAV	CAU	CAY	H2	138.1°	133.7°
CAV	CAU	CAY	H3	99.4°	102.7°
CAU	CAV	CAW	H6	179.6°	179.5°
CAY	CAU	CAT	CAS	179.3°	179.4°
CAY	CAU	CAT	H1	0.6°	0.9°
CAU	CAY	H2	H3	123.6°	123.8°
CAU	CAY	CAZ	H4	88.8°	93.0°
CAU	CAY	CAZ	H5	149.4°	143.7°
CAW	CAX	CAS	H7	180.0°	180.0°
CAW	CAX	CAS	CAT	0.2°	0.2°
CAW	CAX	CAS	CAR	180.0°	179.5°
CAU	CAT	CAS	CAX	0.5°	0.0°
CAU	CAT	CAS	H1	180.0°	179.8°
CAU	CAT	CAS	CAR	179.3°	179.6°
CAT	CAU	CAY	H2	43.6°	46.1°
CAT	CAU	CAY	H3	78.9°	77.6°
CAX	CAS	CAT	CAR	179.8°	179.7°
CAX	CAS	CAR	NAQ	46.5°	34.7°
CAX	CAS	CAR	PBB	71.0°	85.3°
CAX	CAS	CAT	H1	179.4°	179.8°
CAS	CAX	CAW	H6	179.7°	179.9°
CAX	CAS	CAR	H8	170.6°	154.7°
CAT	CAS	CAR	NAQ	133.3°	145.0°
CAT	CAS	CAR	PBB	109.2°	95.1°
CAT	CAS	CAX	H7	179.8°	179.8°
CAT	CAS	CAR	H8	9.2°	24.9°
CAS	CAR	NAQ	PBB	119.5°	120.0°
CAS	CAR	NAQ	H8	125.0°	120.0°
CAS	CAR	PBB	H8	122.2°	120.0°
CAS	CAR	NAQ	C4	116.2°	135.0°
CAS	CAR	PBB	OBC	77.5°	55.0°
CAS	CAR	PBB	OBE	48.4°	65.0°
CAS	CAR	PBB	OBD	168.0°	175.0°
CAR	CAS	CAT	H1	0.7°	0.1°
CAR	CAS	CAX	H7	0.0°	0.6°
CAS	CAR	NAQ	H11	121.7°	45.0°
NAQ	CAR	PBB	H8	118.6°	120.0°
CAR	NAQ	C4	H11	122.1°	180.0°
NAQ	CAR	PBB	OBC	41.8°	65.0°
CAR	NAQ	C4	N3	21.7°	0.0°
CAR	NAQ	C4	C5	158.7°	179.7°
NAQ	CAR	PBB	OBE	167.6°	175.0°
NAQ	CAR	PBB	OBD	72.8°	55.0°
PBB	CAR	NAQ	C4	124.3°	105.0°
CAR	PBB	OBC	OBE	120.7°	120.0°
CAR	PBB	OBC	OBD	117.0°	120.0°
CAR	PBB	OBE	OBD	120.4°	120.0°
CAR	PBB	OBD	H9	113.3°	60.1°
CAR	PBB	OBE	H10	118.4°	60.0°
PBB	CAR	NAQ	H11	2.2°	75.0°
NAQ	C4	N3	C5	179.6°	179.7°
NAQ	C4	N3	C2	179.8°	180.0°
NAQ	C4	C5	CAL	0.3°	0.0°
NAQ	C4	C5	C6	179.8°	179.8°
C4	NAQ	CAR	H8	8.8°	15.0°
OBC	PBB	OBE	OBD	121.2°	120.0°
OBC	PBB	CAR	H8	160.4°	175.0°
OBC	PBB	OBD	H9	0.0°	59.9°
OBC	PBB	OBE	H10	0.0°	60.0°
N3	C4	C5	CAL	179.3°	179.7°
N3	C4	C5	C6	0.6°	0.5°
C4	N3	C2	N1	0.4°	0.1°
N3	C4	NAQ	H11	143.8°	180.0°
C4	N3	C2	H12	179.7°	180.0°
C5	C4	N3	C2	0.5°	0.3°
C4	C5	CAL	C6	179.9°	179.8°
C4	C5	CAL	CAH	179.6°	179.2°
C4	C5	C6	N1	0.4°	0.5°
C4	C5	C6	SAI	180.0°	179.7°
C5	C4	NAQ	H11	36.6°	0.3°
C4	C5	CAL	H13	0.4°	0.0°
N3	C2	N1	H12	180.0°	180.0°
N3	C2	N1	C6	0.2°	0.1°
OBE	PBB	CAR	H8	73.8°	55.0°
OBE	PBB	OBD	H9	127.2°	180.0°
C5	CAL	CAH	H13	180.0°	179.2°
C5	CAL	CAH	CAE	179.0°	180.0°
C5	CAL	CAH	SAI	0.6°	0.7°
CAL	C5	C6	N1	179.5°	179.7°
CAL	C5	C6	SAI	0.1°	0.1°
CAH	CAL	C5	C6	0.5°	0.5°
CAL	CAH	CAE	CAD	151.2°	0.3°
CAL	CAH	CAE	SAI	178.1°	179.3°
CAL	CAH	SAI	C6	0.5°	0.5°
CAL	CAH	CAE	CAF	27.9°	180.0°
C5	C6	N1	C2	0.3°	0.3°
C5	C6	SAI	CAH	0.2°	0.2°
C5	C6	N1	SAI	179.5°	179.7°
C6	C5	CAL	H13	179.5°	179.7°
OBD	PBB	CAR	H8	45.8°	65.0°
OBD	PBB	OBE	H10	121.2°	180.0°
C2	N1	C6	SAI	179.8°	180.0°
CAC	CAD	CAE	H14	180.0°	179.9°
CAC	CAD	CAE	CAH	179.7°	180.0°
CAD	CAC	CAB	H15	180.0°	180.0°
CAC	CAD	CAE	CAF	0.5°	0.3°
CAD	CAC	CAB	CAA	179.3°	180.0°
CAD	CAC	CAB	CAG	0.1°	0.0°
CAD	CAE	CAH	CAF	179.1°	179.7°
CAD	CAE	CAH	SAI	26.9°	179.6°
CAE	CAD	CAC	CAB	0.1°	0.0°
CAD	CAE	CAF	CAG	0.7°	0.6°
CAE	CAD	CAC	H15	179.8°	180.0°
CAD	CAE	CAF	H20	179.3°	179.7°
CAE	CAH	SAI	C6	179.0°	179.9°
CAH	CAE	CAF	CAG	179.8°	179.7°
CAE	CAH	CAL	H13	1.0°	0.7°
CAH	CAE	CAD	H14	0.3°	0.1°
CAH	CAE	CAF	H20	0.1°	0.0°
CAH	SAI	C6	N1	179.8°	180.0°
SAI	CAH	CAE	CAF	154.0°	0.7°
SAI	CAH	CAL	H13	179.4°	179.9°
CAC	CAB	CAA	CAG	179.1°	180.0°
CAC	CAB	CAG	CAF	0.1°	0.3°
CAB	CAC	CAD	H14	179.9°	179.9°
CAC	CAB	CAA	H16	90.4°	90.0°
CAC	CAB	CAA	H17	149.6°	150.0°
CAC	CAB	CAA	H18	29.6°	29.9°
CAC	CAB	CAG	H19	179.9°	180.0°
C6	N1	C2	H12	179.8°	180.0°
CAE	CAF	CAG	CAB	0.5°	0.6°
CAE	CAF	CAG	H20	180.0°	179.7°
CAF	CAE	CAD	H14	179.5°	179.8°
CAE	CAF	CAG	H19	179.5°	179.7°
CAA	CAB	CAG	CAF	179.1°	179.7°
CAA	CAB	CAC	H15	0.7°	0.0°
CAB	CAA	H16	H17	120.0°	120.0°
CAB	CAA	H16	H18	120.0°	120.0°
CAB	CAA	H17	H18	120.0°	120.0°
CAA	CAB	CAG	H19	1.0°	0.0°
CAB	CAG	CAF	H19	180.0°	179.7°
CAG	CAB	CAC	H15	179.9°	180.0°
CAG	CAB	CAA	H16	90.5°	90.0°
CAG	CAB	CAA	H17	29.5°	30.0°
CAG	CAB	CAA	H18	149.5°	150.0°
CAB	CAG	CAF	H20	179.5°	179.7°
H2	CAY	CAZ	H4	29.9°	25.1°
H2	CAY	CAZ	H5	91.8°	98.2°
H3	CAY	CAZ	H4	152.5°	148.8°
H3	CAY	CAZ	H5	30.7°	25.5°
H6	CAW	CAX	H7	0.3°	0.0°
H8	CAR	NAQ	H11	113.3°	165.0°
H14	CAD	CAC	H15	0.2°	0.1°
H16	CAA	H17	H18	120.0°	120.0°
H19	CAG	CAF	H20	0.6°	0.0°

Release date:	2017-03-15
Definition date:	2016-05-12
Last modified:	2017-03-10
Release status:	REL
Processing site:	RCSB
Derived from:	5JUZ