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YK5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O18S16doub1.42Å1.45Å
S16O19doub1.42Å1.46Å
S16C17sing1.81Å1.81Å
S16C15sing1.81Å1.85Å
C15C14sing1.51Å1.54Å
C14C13doub1.38Å1.40ÅAromatic
C14C20sing1.39Å1.39ÅAromatic
F21C20sing1.35Å1.33Å
C13C12sing1.38Å1.39ÅAromatic
C20C22doub1.38Å1.38ÅAromatic
C12C11doub1.40Å1.38ÅAromatic
C22C11sing1.39Å1.39ÅAromatic
C11C10sing1.48Å1.52Å
O09C07doub1.22Å1.29Å
C07C06sing1.46Å1.48Å
C07O08sing1.35Å1.26Å
C10C06doub1.38Å1.39ÅAromatic
C10C23sing1.47Å1.40ÅAromatic
C06N05sing1.38Å1.31ÅAromatic
C23C24doub1.40Å1.41ÅAromatic
C23C04sing1.41Å1.39ÅAromatic
C24C25sing1.37Å1.41ÅAromatic
N05C04sing1.37Å1.34ÅAromatic
C04C03doub1.39Å1.42ÅAromatic
C25C26doub1.39Å1.41ÅAromatic
O37C36doub1.22Å1.19Å
C03C26sing1.38Å1.38ÅAromatic
C03C02sing1.51Å1.57Å
C36O35sing1.34Å1.42Å
C36N27sing1.34Å1.45Å
O35C29sing1.46Å1.36Å
N34C32doub1.30Å1.44Å
C02N27sing1.47Å1.43Å
C02C01sing1.53Å1.50Å
N27C28sing1.47Å1.38Å
N31C32sing1.37Å1.45Å
N31C30sing1.46Å1.50Å
C29C28sing1.54Å1.42Å
C29C30sing1.53Å1.49Å
C32N33sing1.38Å1.28Å
C13H131sing1.08Å1.08Å
C15H151sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
C22H221sing1.08Å1.08Å
C24H241sing1.08Å1.08Å
C25H251sing1.08Å1.08Å
C26H261sing1.08Å1.08Å
C28H281sing1.09Å1.10Å
C28H1sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C01H013sing1.09Å1.10Å
C02H021sing1.09Å1.10Å
C12H121sing1.08Å1.08Å
C17H173sing1.09Å1.10Å
C17H171sing1.09Å1.10Å
C17H172sing1.09Å1.10Å
C29H2sing1.09Å1.10Å
C30H302sing1.09Å1.10Å
C30H301sing1.09Å1.10Å
N05H051sing0.97Å1.00Å
N31H311sing0.97Å1.00Å
N33H331sing0.97Å1.00Å
N33H3sing0.97Å1.00Å
N34H341sing0.97Å1.00Å
O08H4sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O18S16O19112.9°119.3°
O18S16C17107.7°108.6°
O18S16C15110.9°108.6°
O19S16C17109.9°108.5°
O19S16C15108.5°108.6°
C17S16C15106.7°101.9°
S16C17H173109.5°109.5°
S16C17H171109.5°109.5°
S16C17H172109.5°109.4°
S16C15C14109.8°109.4°
S16C15H151109.4°109.4°
S16C15H152109.4°109.5°
C15C14C13121.1°119.9°
C15C14C20120.2°119.8°
C14C15H151109.4°109.5°
C14C15H152109.4°109.5°
C13C14C20118.7°120.3°
C14C13C12120.4°120.2°
C14C13H131119.8°119.9°
C14C20F21121.5°120.0°
C14C20C22120.8°120.1°
F21C20C22117.6°120.0°
C13C12C11120.1°119.9°
C12C13H131119.8°119.9°
C13C12H121120.0°120.0°
C20C22C11120.3°119.8°
C20C22H221119.9°120.1°
C12C11C22119.7°119.7°
C12C11C10121.0°120.1°
C11C12H121120.0°120.1°
C22C11C10119.2°120.1°
C11C22H221119.9°120.1°
C11C10C06125.5°126.8°
C11C10C23128.9°126.8°
O09C07C06115.0°120.0°
O09C07O08123.5°119.9°
C06C07O08120.1°120.0°
C07C06C10130.9°125.5°
C07C06N05119.2°125.5°
C07O08H4109.5°114.0°
C06C10C23105.6°106.4°
C10C06N05109.7°109.0°
C10C23C24133.2°133.5°
C10C23C04106.2°106.5°
C06N05C04110.0°110.1°
C06N05H051125.0°124.9°
C24C23C04120.6°120.0°
C23C24C25118.0°119.8°
C23C24H241121.0°120.1°
C23C04N05108.4°108.0°
C23C04C03121.8°119.2°
C24C25C26120.8°120.5°
C25C24H241121.0°120.1°
C24C25H251119.6°119.8°
N05C04C03129.7°132.8°
C04N05H051125.0°125.0°
C04C03C26117.4°119.8°
C04C03C02118.0°120.1°
C25C26C03121.5°120.7°
C26C25H251119.6°119.8°
C25C26H261119.3°119.6°
O37C36O35123.9°123.0°
O37C36N27130.7°123.2°
C26C03C02124.6°120.1°
C03C26H261119.3°119.7°
C03C02N27110.2°109.5°
C03C02C01111.6°109.5°
C03C02H021107.2°109.5°
O35C36N27105.3°113.8°
C36O35C29107.0°109.4°
C36N27C02120.1°125.5°
C36N27C28111.0°108.9°
O35C29C28113.1°104.0°
O35C29C30122.2°110.5°
O35C29H291.6°110.6°
N34C32N31111.5°120.0°
N34C32N33125.8°120.0°
C32N34H341112.0°120.0°
N27C02C01110.6°109.5°
C02N27C28128.8°125.5°
N27C02H021109.0°109.4°
C02C01H011109.5°109.4°
C02C01H012109.5°109.5°
C02C01H013109.4°109.4°
C01C02H021108.1°109.5°
N27C28C29103.5°103.9°
N27C28H281110.9°110.6°
N27C28H1110.9°110.6°
C32N31C30113.9°120.0°
N31C32N33122.7°120.0°
C32N31H311123.1°120.0°
N31C30C29108.2°109.5°
N31C30H302109.8°109.5°
N31C30H301109.8°109.5°
C30N31H311123.0°120.0°
C28C29C30124.5°110.5°
C29C28H281110.9°110.5°
C29C28H1110.9°110.5°
C28C29H291.5°110.6°
C30C29H291.5°110.5°
C29C30H302109.8°109.4°
C29C30H301109.8°109.5°
C32N33H331120.0°120.0°
C32N33H3120.0°120.0°
H151C15H152109.5°109.5°
H281C28H1109.5°110.5°
H011C01H012109.5°109.5°
H011C01H013109.5°109.5°
H012C01H013109.5°109.5°
H173C17H171109.5°109.5°
H173C17H172109.4°109.5°
H171C17H172109.5°109.5°
H302C30H301109.5°109.5°
H331N33H3120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O18S16O19C17120.3°125.0°
O18S16O19C15123.3°125.0°
O18S16C17C15119.1°114.5°
O18S16C15C14178.0°65.5°
O18S16C15H15157.9°54.5°
O18S16C15H15261.9°174.5°
O18S16C17H173180.0°54.5°
O18S16C17H17160.0°174.5°
O18S16C17H17260.0°65.5°
O19S16C17C15117.5°114.4°
O19S16C15C1453.4°65.5°
O19S16C15H15166.6°174.5°
O19S16C15H152173.5°54.4°
O19S16C17H17356.6°174.5°
O19S16C17H171176.6°54.5°
O19S16C17H17263.4°65.5°
C17S16C15C1465.0°180.0°
C17S16C15H151175.0°60.0°
C17S16C15H15255.1°60.0°
S16C17H173H171120.0°120.0°
S16C17H173H172120.0°120.0°
S16C17H171H172120.0°120.0°
S16C15C14H151120.1°119.9°
S16C15C14H152120.0°120.0°
S16C15C14C1386.9°90.0°
S16C15C14C2094.0°90.0°
S16C15H151H152119.8°120.0°
C15S16C17H17360.9°60.0°
C15S16C17H17159.1°60.0°
C15S16C17H172179.1°180.0°
C15C14C13C20179.2°180.0°
C15C14C20F211.4°0.0°
C15C14C13C12179.0°180.0°
C15C14C20C22180.0°180.0°
C15C14C13H1311.0°0.3°
C14C15H151H152119.8°120.0°
C13C14C20F21179.4°180.0°
C14C13C12H131180.0°179.7°
C13C14C20C220.8°0.0°
C14C13C12C112.6°0.0°
C13C14C15H15133.2°150.0°
C13C14C15H152153.1°30.0°
C14C13C12H121177.4°179.7°
C14C20F21C22178.6°180.0°
C20C14C13C120.2°0.0°
C14C20C22C110.5°0.0°
C20C14C13H131179.8°179.8°
C20C14C15H151146.0°29.9°
C20C14C15H15226.1°150.0°
C14C20C22H221179.4°180.0°
F21C20C22C11178.1°180.0°
F21C20C22H2212.0°0.0°
C13C12C11H121180.0°179.7°
C13C12C11C223.9°0.0°
C13C12C11C10179.8°180.0°
C20C22C11C123.0°0.0°
C20C22C11H221180.0°180.0°
C20C22C11C10179.3°180.0°
C12C11C22C10176.3°180.0°
C12C11C10C06141.2°115.0°
C12C11C10C2340.6°64.7°
C11C12C13H131177.4°179.8°
C12C11C22H221177.0°180.0°
C22C11C10C0642.5°65.0°
C22C11C10C23135.7°115.3°
C22C11C12H121176.1°179.7°
C11C10C06C078.5°0.1°
C11C10C06C23178.5°179.8°
C11C10C06N05177.7°180.0°
C11C10C23C241.7°0.2°
C11C10C23C04179.1°179.9°
C10C11C22H2210.7°0.0°
C10C11C12H1210.2°0.3°
O09C07C06O08167.2°180.0°
O09C07C06C1037.6°0.1°
O09C07C06N05135.8°180.0°
O09C07O08H40.0°0.0°
C07C06C10N05173.9°179.9°
C07C06C10C23173.0°179.9°
C07C06N05C04172.6°179.9°
C07C06N05H0517.4°0.0°
C06C07O08H4166.1°180.0°
O08C07C06C10155.2°179.9°
O08C07C06N0531.4°0.0°
C06C10C23C24179.9°180.0°
C06C10C23C040.7°0.3°
C10C06N05C042.1°0.1°
C10C06N05H051177.9°179.9°
C23C10C06N050.9°0.2°
C10C23C24C04179.1°179.7°
C10C23C24C25179.2°179.6°
C10C23C04N051.9°0.3°
C10C23C04C03179.6°179.7°
C10C23C24H2410.8°0.3°
C06N05C04C232.5°0.1°
C06N05C04H051180.0°180.0°
C06N05C04C03179.2°179.9°
C23C24C25H241180.0°180.0°
C24C23C04N05178.8°180.0°
C24C23C04C030.3°0.0°
C23C24C25C260.8°0.1°
C23C24C25H251179.2°180.0°
C04C23C24C250.1°0.1°
C23C04N05C03178.3°180.0°
C23C04C03C261.2°0.0°
C23C04C03C02177.2°180.0°
C04C23C24H241179.9°180.0°
C23C04N05H051177.5°179.9°
C24C25C26H251180.0°179.9°
C24C25C26C031.7°0.1°
C24C25C26H261178.3°179.9°
N05C04C03C26179.3°180.0°
N05C04C03C020.9°0.0°
C04C03C26C251.9°0.0°
C04C03C26C02178.2°180.0°
C04C03C02N27100.0°75.7°
C04C03C02C01136.7°164.3°
C04C03C26H261178.1°180.0°
C04C03C02H02118.5°44.2°
C03C04N05H0510.8°0.1°
C25C26C03H261180.0°180.0°
C25C26C03C02176.4°180.0°
C26C25C24H241179.2°180.0°
O37C36O35N27176.1°179.9°
O37C36O35C29178.0°180.0°
O37C36N27C024.5°0.1°
O37C36N27C28178.5°179.9°
C26C03C02N2781.8°104.3°
C26C03C02C0141.5°15.7°
C03C26C25H251178.3°180.0°
C26C03C02H021159.7°135.8°
C03C02N27C3677.6°58.2°
C03C02N27C01123.9°120.0°
C03C02N27H021117.4°120.0°
C03C02C01H021117.6°120.0°
C03C02N27C2898.7°121.8°
C02C03C26H2613.7°0.0°
C03C02C01H011180.0°60.0°
C03C02C01H01260.0°180.0°
C03C02C01H01360.0°59.9°
O35C36N27C02179.8°179.9°
O35C36N27C282.9°0.0°
C36O35C29C280.5°0.1°
C36O35C29C30175.3°118.7°
C36O35C29H291.9°118.6°
N27C36O35C291.9°0.0°
C36N27C02C28176.3°179.9°
C36N27C02C01158.5°61.8°
C36N27C28C292.5°0.0°
C36N27C28H281116.5°118.6°
C36N27C28H1121.5°118.7°
C36N27C02H02139.8°178.2°
O35C29C28N271.3°0.1°
O35C29C30N3173.3°70.4°
O35C29C28C30174.7°118.6°
O35C29C28H292.4°118.7°
O35C29C30H292.9°122.7°
O35C29C28H281117.8°118.6°
O35C29C28H1120.3°118.7°
O35C29C30H30246.5°169.6°
O35C29C30H301166.9°49.6°
N34C32N31N33178.5°179.9°
N34C32N31C30177.7°180.0°
N34C32N31H3112.3°0.1°
N34C32N33H331178.3°180.0°
N34C32N33H31.7°0.1°
N27C02C01H021119.3°120.0°
C02N27C28C29179.1°179.9°
C02N27C28H28160.0°61.5°
C02N27C28H161.9°61.3°
N27C02C01H01156.9°180.0°
N27C02C01H01263.1°60.0°
N27C02C01H013176.9°60.1°
C01C02N27C2825.2°118.1°
C02C01H011H012120.0°120.0°
C02C01H011H013120.0°119.9°
C02C01H012H013120.0°120.0°
N27C28C29H281119.0°118.6°
N27C28C29H1119.0°118.7°
N27C28C29C30173.4°118.7°
N27C28H281H1122.8°122.8°
C28N27C02H021143.9°1.9°
N27C28C29H293.7°118.7°
C32N31C30H311180.0°179.9°
C32N31C30C29162.3°180.0°
C32N31C30H30242.5°60.1°
C32N31C30H30177.9°60.0°
N31C32N33H3310.0°0.0°
N31C32N33H3180.0°180.0°
N31C32N34H341178.4°180.0°
N31C30C29C28112.5°175.0°
N31C30C29H302119.8°120.0°
N31C30C29H301119.8°120.0°
C30N31C32N333.9°0.1°
N31C30C29H219.6°52.3°
N31C30H302H301120.6°120.0°
C28C29C30H292.9°122.7°
C29C28H281H1122.8°122.7°
C28C29C30H302127.7°55.0°
C28C29C30H3017.3°65.0°
C30C29C28H28167.5°0.0°
C30C29C28H154.4°122.7°
C29C30H302H301120.6°120.0°
C29C30N31H31117.7°0.1°
N33C32N31H311176.2°180.0°
C32N33H331H3180.0°180.0°
N33C32N34H3410.0°0.1°
H131C13C12H1212.6°0.0°
H241C24C25H2510.8°0.1°
H251C25C26H2611.7°0.0°
H281C28C29H225.3°122.7°
H1C28C29H2147.3°0.0°
H011C01H012H013120.0°120.0°
H011C01C02H02162.4°60.1°
H012C01C02H021177.6°60.0°
H013C01C02H02157.6°180.0°
H173C17H171H172120.0°120.0°
H2C29C30H302139.4°67.7°
H2C29C30H301100.2°172.3°
H302C30N31H311137.5°120.0°
H301C30N31H311102.1°119.9°

223166

PDB entries from 2024-07-31

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