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SummaryGeometryRelated PDB entries

YJN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N27C26trip1.14Å1.14Å
C24C23doub1.38Å1.39ÅAromatic
C24C25sing1.40Å1.39ÅAromatic
C26C25sing1.43Å1.53Å
C23C22sing1.39Å1.39ÅAromatic
C25C20doub1.41Å1.40ÅAromatic
C01C02sing1.51Å1.53Å
C22C21doub1.38Å1.39ÅAromatic
C20C21sing1.39Å1.39ÅAromatic
C20C17sing1.48Å1.39Å
O09C02sing1.34Å1.47Å
O09C08sing1.35Å1.47Å
C02C03doub1.35Å1.53Å
C17C18doub1.39Å1.39ÅAromatic
C17C16sing1.39Å1.39ÅAromatic
C18C19sing1.38Å1.39ÅAromatic
C16C15doub1.38Å1.38ÅAromatic
O11C10doub1.22Å1.19Å
C03C04sing1.42Å1.44Å
C08C10sing1.47Å1.52Å
C08C06doub1.36Å1.53Å
C10N12sing1.35Å1.44Å
C19C14doub1.38Å1.39ÅAromatic
C15C14sing1.38Å1.38ÅAromatic
C04C06sing1.47Å1.44Å
C04O05doub1.22Å1.18Å
C14C13sing1.51Å1.51Å
C06O07sing1.36Å1.40Å
N12C13sing1.46Å1.44Å
C13H1sing1.09Å1.10Å
C13H2sing1.09Å1.10Å
C15H3sing1.08Å1.08Å
C16H4sing1.08Å1.08Å
C18H5sing1.08Å1.08Å
C19H6sing1.08Å1.08Å
C21H7sing1.08Å1.08Å
C22H8sing1.08Å1.08Å
C23H9sing1.08Å1.08Å
C24H10sing1.08Å1.08Å
C01H11sing1.09Å1.10Å
C01H12sing1.09Å1.10Å
C01H13sing1.09Å1.10Å
C03H14sing1.08Å1.08Å
O07H16sing0.97Å0.95Å
N12H18sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N27C26C25177.8°180.0°
C23C24C25120.4°119.9°
C24C23C22119.9°120.4°
C24C23H9120.1°119.8°
C23C24H10119.8°120.0°
C24C25C26118.0°120.2°
C24C25C20120.0°119.6°
C25C24H10119.8°120.1°
C26C25C20122.0°120.2°
C23C22C21119.8°120.4°
C23C22H8120.1°119.8°
C22C23H9120.0°119.8°
C25C20C21119.2°119.6°
C25C20C17123.1°120.2°
C01C02O09118.5°119.0°
C01C02C03119.3°119.1°
C02C01H11109.5°109.5°
C02C01H12109.4°109.4°
C02C01H13109.5°109.5°
C22C21C20120.7°120.0°
C22C21H7119.7°120.0°
C21C22H8120.1°119.8°
C21C20C17117.8°120.2°
C20C21H7119.6°120.0°
C20C17C18121.4°120.1°
C20C17C16119.7°120.1°
C02O09C08113.3°122.7°
O09C02C03119.5°121.9°
O09C08C10118.4°119.7°
O09C08C06118.7°120.5°
C02C03C04119.7°119.2°
C02C03H14120.2°120.4°
C18C17C16119.0°119.8°
C17C18C19120.5°119.9°
C17C18H5119.8°120.0°
C17C16C15120.8°119.9°
C17C16H4119.6°120.1°
C18C19C14119.6°120.2°
C19C18H5119.7°120.1°
C18C19H6120.2°120.0°
C16C15C14120.1°120.1°
C16C15H3120.0°119.9°
C15C16H4119.6°120.0°
O11C10C08120.2°120.0°
O11C10N12120.8°119.9°
C03C04C06119.9°117.6°
C03C04O05120.4°121.2°
C04C03H14120.1°120.4°
C10C08C06120.7°119.8°
C08C10N12118.9°120.1°
C08C06C04118.6°118.2°
C08C06O07120.9°120.9°
C10N12C13118.6°120.0°
C10N12H18120.7°119.9°
C19C14C15120.0°120.2°
C19C14C13122.0°119.9°
C14C19H6120.2°119.9°
C15C14C13118.0°119.9°
C14C15H3119.9°119.9°
C06C04O05119.7°121.2°
C04C06O07120.3°120.9°
C14C13N12113.2°109.5°
C14C13H1108.5°109.5°
C14C13H2108.5°109.4°
C06O07H16109.5°114.0°
N12C13H1108.5°109.5°
N12C13H2108.5°109.5°
C13N12H18120.7°120.0°
H1C13H2109.5°109.5°
H11C01H12109.5°109.5°
H11C01H13109.4°109.5°
H12C01H13109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N27C26C25C24173.3°93.2°
N27C26C25C207.1°86.3°
C23C24C25H10180.0°179.7°
C23C24C25C26179.7°180.0°
C24C23C22H9180.0°179.9°
C23C24C25C200.1°0.5°
C24C23C22C210.5°0.0°
C24C23C22H8179.6°180.0°
C24C25C26C20179.6°179.5°
C25C24C23C220.2°0.3°
C24C25C20C210.3°0.5°
C24C25C20C17179.8°179.7°
C25C24C23H9179.8°179.8°
C26C25C20C21179.8°180.0°
C26C25C20C170.6°0.3°
C26C25C24H100.3°0.2°
C23C22C21H8180.0°180.0°
C23C22C21C200.7°0.0°
C23C22C21H7179.3°180.0°
C22C23C24H10179.8°180.0°
C25C20C21C220.6°0.2°
C25C20C21C17179.6°179.8°
C25C20C17C1854.4°129.8°
C25C20C17C16127.0°50.0°
C25C20C21H7179.4°179.8°
C20C25C24H10179.9°179.7°
C01C02O09C03161.3°179.8°
C01C02O09C08167.6°179.7°
C01C02C03C04174.1°180.0°
C02C01H11H12120.0°120.0°
C02C01H11H13120.0°120.0°
C02C01H12H13120.0°120.0°
C01C02C03H145.9°0.1°
C22C21C20H7180.0°180.0°
C22C21C20C17179.8°180.0°
C21C22C23H9179.5°179.9°
C21C20C17C18125.2°50.0°
C21C20C17C1653.4°130.3°
C20C21C22H8179.4°179.9°
C20C17C18C16178.6°179.7°
C20C17C18C19179.1°179.9°
C20C17C16C15178.9°179.7°
C20C17C16H41.0°0.3°
C20C17C18H50.9°0.2°
C17C20C21H70.2°0.0°
O09C02C03C0413.0°0.2°
C02O09C08C10159.0°179.8°
C02O09C08C0637.7°0.5°
O09C02C01H110.0°90.2°
O09C02C01H12120.0°29.8°
O09C02C01H13120.0°149.7°
O09C02C03H14167.0°179.7°
C08O09C02C0331.2°0.5°
O09C08C10O1112.2°179.7°
O09C08C10C06162.9°179.7°
O09C08C10N12167.7°0.3°
O09C08C06C0426.4°0.2°
O09C08C06O07158.8°179.7°
C02C03C04H14180.0°179.9°
C02C03C04C060.1°0.1°
C02C03C04O05179.7°180.0°
C03C02C01H11161.3°90.0°
C03C02C01H1278.7°150.0°
C03C02C01H1341.3°30.1°
C17C18C19H5180.0°179.8°
C18C17C16C150.3°0.0°
C17C18C19C140.1°0.5°
C18C17C16H4179.7°180.0°
C17C18C19H6179.8°180.0°
C16C17C18C190.5°0.2°
C17C16C15H4180.0°180.0°
C17C16C15C140.3°0.1°
C17C16C15H3179.7°180.0°
C16C17C18H5179.5°179.9°
C18C19C14H6180.0°179.5°
C18C19C14C150.4°0.5°
C18C19C14C13179.0°179.7°
C16C15C14C190.7°0.3°
C16C15C14H3180.0°179.9°
C16C15C14C13179.3°179.9°
O11C10C08N12179.9°180.0°
O11C10C08C06175.1°0.0°
O11C10N12C130.4°0.0°
O11C10N12H18179.6°180.0°
C03C04C06C086.3°0.0°
C03C04C06O05179.8°179.9°
C03C04C06O07178.9°180.0°
C10C08C06C04170.8°180.0°
C10C08C06O074.0°0.0°
C08C10N12C13179.7°180.0°
C08C10N12H180.3°0.1°
C06C08C10N124.8°180.0°
C08C06C04O07174.8°180.0°
C08C06C04O05173.9°180.0°
C08C06O07H16174.3°180.0°
C10N12C13C1494.1°180.0°
C10N12C13H18180.0°180.0°
C10N12C13H126.4°60.0°
C10N12C13H2145.3°60.0°
C19C14C15C13178.6°179.8°
C19C14C13N1229.7°90.3°
C19C14C13H1150.3°29.8°
C19C14C13H290.8°149.8°
C19C14C15H3179.3°179.7°
C14C19C18H5179.8°179.7°
C15C14C13N12151.7°90.0°
C15C14C13H131.1°150.0°
C15C14C13H287.8°30.0°
C14C15C16H4179.7°180.0°
C15C14C19H6179.6°180.0°
C06C04C03H14179.9°180.0°
C04C06O07H160.4°0.0°
O05C04C06O071.0°0.1°
O05C04C03H140.2°0.1°
C14C13N12H1120.5°120.0°
C14C13N12H2120.6°120.0°
C14C13H1H2118.3°120.0°
C13C14C15H30.7°0.0°
C13C14C19H61.0°0.2°
C14C13N12H1885.9°0.0°
N12C13H1H2118.3°120.0°
H1C13N12H18153.6°120.0°
H2C13N12H1834.7°120.0°
H3C15C16H40.3°0.0°
H5C18C19H60.2°0.2°
H7C21C22H80.6°0.0°
H8C22C23H90.5°0.1°
H9C23C24H100.2°0.1°
H11C01H12H13120.0°120.0°

222415

PDB entries from 2024-07-10

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