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SummaryGeometryRelated PDB entries

YJB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAACAFdoub1.35Å1.39ÅAromatic
CAACABsing1.41Å1.34ÅAromatic
CAFCAEsing1.41Å1.39ÅAromatic
NAHCABdoub1.31Å1.33ÅAromatic
NAHOAIsing1.21Å1.33ÅAromatic
CABCACsing1.48Å1.35ÅAromatic
NAQCAPdoub1.32Å1.34ÅAromatic
NAQNATsing1.28Å1.34ÅAromatic
CAECAPsing1.48Å1.36Å
CAECADdoub1.38Å1.40ÅAromatic
OAICAGsing1.34Å1.34ÅAromatic
CAPNARsing1.36Å1.33ÅAromatic
NATNASdoub1.29Å1.34ÅAromatic
CACCADsing1.40Å1.36ÅAromatic
CACCAGdoub1.39Å1.36ÅAromatic
CAGCAJsing1.47Å1.35Å
NARNASsing1.41Å1.33ÅAromatic
CAJCAKdoub1.40Å1.40ÅAromatic
CAJCAOsing1.40Å1.39ÅAromatic
CAKCALsing1.38Å1.39ÅAromatic
CAOCANdoub1.38Å1.39ÅAromatic
CALCAMdoub1.38Å1.38ÅAromatic
CANCAMsing1.39Å1.40ÅAromatic
CANOAZsing1.36Å1.36Å
OAZCAUsing1.36Å1.35Å
NBACAUdoub1.32Å1.34ÅAromatic
NBACAVsing1.32Å1.39ÅAromatic
CAUCAYsing1.39Å1.39ÅAromatic
CAVCAWdoub1.38Å1.38ÅAromatic
CAYCLBCsing1.74Å1.72Å
CAYCAXdoub1.38Å1.39ÅAromatic
CAWCAXsing1.39Å1.39ÅAromatic
CAWCLBBsing1.74Å1.64Å
CAXH1sing1.08Å1.08Å
CAVH2sing1.08Å1.08Å
CAOH3sing1.08Å1.08Å
CAMH4sing1.08Å1.08Å
CALH5sing1.08Å1.08Å
CAKH6sing1.08Å1.08Å
CADH7sing1.08Å1.08Å
CAAH8sing1.08Å1.08Å
CAFH9sing1.08Å1.08Å
NARH10sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAFCAACAB121.2°119.8°
CAACAFCAE119.1°121.8°
CAFCAAH8119.4°120.1°
CAACAFH9120.5°119.1°
CAACABNAH128.7°136.2°
CAACABCAC121.9°118.6°
CABCAAH8119.4°120.1°
CAFCAECAP120.4°119.4°
CAFCAECAD117.1°121.2°
CAECAFH9120.4°119.1°
CABNAHOAI108.5°112.4°
NAHCABCAC109.4°105.1°
NAHOAICAG107.6°113.6°
CABCACCAD118.4°119.4°
CABCACCAG105.5°103.1°
CAPNAQNAT107.8°110.5°
NAQCAPCAE126.4°126.5°
NAQCAPNAR108.2°107.0°
NAQNATNAS107.8°110.4°
CAPCAECAD122.5°119.4°
CAECAPNAR125.4°126.5°
CAECADCAC122.4°119.2°
CAECADH7118.8°120.4°
OAICAGCAC108.9°105.7°
OAICAGCAJ119.1°127.1°
CAPNARNAS108.3°105.2°
CAPNARH10125.8°127.4°
NATNASNAR107.9°106.9°
CADCACCAG136.1°137.5°
CACCADH7118.8°120.4°
CACCAGCAJ131.8°127.2°
CAGCAJCAK117.8°120.2°
CAGCAJCAO124.7°120.1°
NASNARH10125.9°127.4°
CAKCAJCAO117.4°119.7°
CAJCAKCAL121.9°119.9°
CAJCAKH6119.0°120.0°
CAJCAOCAN120.9°119.7°
CAJCAOH3119.5°120.1°
CAKCALCAM119.8°120.2°
CAKCALH5120.1°119.9°
CALCAKH6119.0°120.0°
CAOCANCAM120.9°120.1°
CAOCANOAZ118.0°120.0°
CANCAOH3119.6°120.2°
CALCAMCAN119.0°120.3°
CALCAMH4120.5°119.9°
CAMCALH5120.1°119.9°
CAMCANOAZ121.1°119.9°
CANCAMH4120.5°119.9°
CANOAZCAU112.9°118.0°
OAZCAUNBA121.8°119.6°
OAZCAUCAY115.7°119.7°
CAUNBACAV118.9°121.6°
NBACAUCAY122.5°120.7°
NBACAVCAW120.0°120.9°
NBACAVH2120.0°119.5°
CAUCAYCLBC120.4°120.5°
CAUCAYCAX119.3°119.1°
CAVCAWCAX121.0°119.3°
CAVCAWCLBB117.9°120.4°
CAWCAVH2120.0°119.6°
CLBCCAYCAX120.4°120.5°
CAYCAXCAW118.4°118.5°
CAYCAXH1120.8°120.7°
CAXCAWCLBB121.1°120.3°
CAWCAXH1120.8°120.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAFCAACABH8180.0°179.5°
CAACAFCAEH9180.0°179.5°
CAFCAACABNAH179.5°180.0°
CAFCAACABCAC0.2°0.0°
CAACAFCAECAP178.5°180.0°
CAACAFCAECAD0.2°0.7°
CABCAACAFCAE0.0°0.5°
CAACABNAHCAC179.7°180.0°
CAACABNAHOAI180.0°180.0°
CAACABCACCAD0.0°0.2°
CAACABCACCAG179.2°179.8°
CABCAACAFH9180.0°180.0°
CAFCAECAPNAQ2.3°179.7°
CAFCAECAPCAD178.2°179.4°
CAFCAECAPNAR174.5°0.0°
CAFCAECADCAC0.3°0.4°
CAFCAECADH7179.7°179.5°
CAECAFCAAH8180.0°180.0°
CABNAHOAICAG0.7°0.2°
NAHCABCACCAD179.7°179.8°
NAHCABCACCAG1.1°0.2°
NAHCABCAAH80.5°0.4°
OAINAHCABCAC0.3°0.0°
NAHOAICAGCAC1.3°0.3°
NAHOAICAGCAJ177.3°180.0°
CABCACCADCAE0.3°0.1°
CABCACCAGOAI1.5°0.3°
CABCACCADCAG178.9°179.9°
CABCACCAGCAJ176.7°180.0°
CABCACCADH7179.8°180.0°
CACCABCAAH8179.9°179.6°
NAQCAPCAENAR176.8°179.7°
NAQCAPCAECAD179.4°0.3°
CAPNAQNATNAS0.4°0.5°
NAQCAPNARNAS1.0°0.3°
NAQCAPNARH10179.0°179.8°
NATNAQCAPCAE178.2°179.8°
NATNAQCAPNAR0.9°0.4°
NAQNATNASNAR0.2°0.3°
CAPCAECADCAC178.7°179.7°
CAECAPNARNAS178.4°180.0°
CAPCAECADH71.4°0.2°
CAPCAECAFH91.5°0.5°
CAECAPNARH101.7°0.1°
CADCAECAPNAR3.7°179.4°
CAECADCACH7180.0°179.9°
CAECADCACCAG179.2°180.0°
CADCAECAFH9179.8°179.9°
OAICAGCACCAD179.5°179.7°
OAICAGCACCAJ175.2°179.7°
OAICAGCAJCAK6.3°45.6°
OAICAGCAJCAO177.8°133.5°
CAPNARNASNAT0.8°0.0°
CAPNARNASH10180.0°179.9°
NATNASNARH10179.2°179.9°
CADCACCAGCAJ4.3°0.0°
CACCAGCAJCAK168.6°134.0°
CACCAGCAJCAO7.4°46.9°
CAGCACCADH70.8°0.1°
CAGCAJCAKCAO176.3°179.1°
CAGCAJCAKCAL178.3°180.0°
CAGCAJCAOCAN177.9°179.7°
CAGCAJCAOH32.1°0.3°
CAGCAJCAKH61.7°0.6°
CAJCAKCALH6180.0°179.3°
CAKCAJCAOCAN1.9°0.6°
CAJCAKCALCAM1.0°0.7°
CAKCAJCAOH3178.1°179.4°
CAJCAKCALH5179.0°179.4°
CAOCAJCAKCAL2.0°0.9°
CAJCAOCANH3180.0°180.0°
CAJCAOCANCAM0.7°0.0°
CAJCAOCANOAZ180.0°179.7°
CAOCAJCAKH6178.0°179.8°
CAKCALCAMH5180.0°179.9°
CAKCALCAMCAN0.3°0.1°
CAKCALCAMH4179.7°180.0°
CAOCANCAMCAL0.4°0.2°
CAOCANCAMOAZ179.2°179.7°
CAOCANOAZCAU106.0°76.2°
CAOCANCAMH4179.6°179.7°
CALCAMCANH4180.0°179.9°
CALCAMCANOAZ178.8°180.0°
CAMCALCAKH6179.0°180.0°
CAMCANOAZCAU74.8°104.1°
CAMCANCAOH3179.3°180.0°
CANCAMCALH5179.7°180.0°
CANOAZCAUNBA8.8°1.2°
CANOAZCAUCAY171.0°178.1°
OAZCANCAOH30.0°0.3°
OAZCANCAMH41.2°0.0°
OAZCAUNBACAY179.8°179.3°
OAZCAUNBACAV179.7°180.0°
OAZCAUCAYCLBC0.4°0.3°
OAZCAUCAYCAX179.8°179.9°
CAUNBACAVCAW0.1°0.4°
NBACAUCAYCLBC179.8°179.6°
NBACAUCAYCAX0.0°0.6°
CAUNBACAVH2180.0°179.6°
CAVNBACAUCAY0.1°0.7°
NBACAVCAWH2180.0°180.0°
NBACAVCAWCAX0.0°0.1°
NBACAVCAWCLBB180.0°180.0°
CAUCAYCLBCCAX179.8°179.8°
CAUCAYCAXCAW0.0°0.3°
CAUCAYCAXH1180.0°179.7°
CAVCAWCAXCAY0.0°0.0°
CAVCAWCAXCLBB180.0°180.0°
CAVCAWCAXH1180.0°180.0°
CLBCCAYCAXCAW179.8°179.9°
CLBCCAYCAXH10.2°0.0°
CAYCAXCAWH1180.0°180.0°
CAYCAXCAWCLBB180.0°180.0°
CAXCAWCAVH2180.0°180.0°
CLBBCAWCAXH10.1°0.1°
CLBBCAWCAVH20.0°0.0°
H4CAMCALH50.3°0.1°
H5CALCAKH61.0°0.1°
H8CAACAFH90.0°0.5°

247536

PDB entries from 2026-01-14

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