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YJ8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1N2sing1.47Å1.44Å
C1C5sing1.54Å1.54Å
C1C6sing1.51Å1.53Å
C1H1sing1.09Å1.10Å
N2C3sing1.47Å1.45Å
N2C21sing1.35Å1.38Å
C3C4sing1.55Å1.55Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
C4C5sing1.55Å1.51Å
C4S8sing1.81Å1.74Å
C4H4sing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
C6O7doub1.21Å1.26Å
C6N16sing1.35Å1.36Å
S8C9sing1.76Å1.69Å
S8O33doub1.42Å1.43Å
S8O34doub1.42Å1.41Å
C9C10doub1.38Å1.37ÅAromatic
C9C14sing1.38Å1.41ÅAromatic
C10C11sing1.38Å1.39ÅAromatic
C10CLsing1.74Å1.66Å
C11C12doub1.38Å1.39ÅAromatic
C11H11sing1.08Å1.08Å
C12C13sing1.38Å1.39ÅAromatic
C12H12sing1.08Å1.08Å
C13C14doub1.38Å1.39ÅAromatic
C13H13sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
N16C17sing1.47Å1.40Å
N16HN16sing0.97Å1.00Å
C17C18sing1.51Å1.47Å
C17C19sing1.53Å1.53Å
C17C20sing1.53Å1.53Å
C18N35doub1.28Å1.29Å
C19C20sing1.53Å1.49Å
C19H19sing1.09Å1.10Å
C19H19Asing1.09Å1.10Å
C20H20sing1.09Å1.10Å
C20H20Asing1.09Å1.10Å
C21O22doub1.21Å1.26Å
C21C23sing1.51Å1.51Å
C23C24sing1.51Å1.47Å
C23C31sing1.53Å1.51Å
C23C32sing1.53Å1.50Å
C24C25doub1.38Å1.41ÅAromatic
C24C29sing1.38Å1.41ÅAromatic
C25C26sing1.38Å1.38ÅAromatic
C25H25sing1.08Å1.08Å
C26C27doub1.38Å1.38ÅAromatic
C26H26sing1.08Å1.08Å
C27C28sing1.38Å1.38ÅAromatic
C27I30sing2.09Å2.09Å
C28C29doub1.38Å1.39ÅAromatic
C28H28sing1.08Å1.08Å
C29H29sing1.08Å1.08Å
C31C32sing1.53Å1.50Å
C31H31sing1.09Å1.10Å
C31H31Asing1.09Å1.10Å
C32H32sing1.09Å1.10Å
C32H32Asing1.09Å1.10Å
C18H18sing1.08Å1.08Å
N35H35sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N2C1C5104.4°107.3°
N2C1C6113.6°109.9°
N2C1H1110.0°109.9°
C1N2C3110.9°108.7°
C1N2C21120.8°125.7°
C5C1C6108.8°109.9°
C5C1H1114.6°109.9°
C1C5C4104.7°103.0°
C1C5H5111.1°110.8°
C1C5H5A111.1°110.7°
C6C1H1105.6°109.9°
C1C6O7122.8°120.0°
C1C6N16111.5°120.0°
C3N2C21127.0°125.6°
N2C3C4105.6°104.8°
N2C3H3110.8°110.3°
N2C3H3A110.8°110.4°
N2C21O22115.8°120.0°
N2C21C23119.8°120.0°
C4C3H3110.8°110.3°
C4C3H3A110.8°110.4°
C3C4C5100.0°101.6°
C3C4S8116.5°111.0°
C3C4H4111.6°111.0°
H3C3H3A108.1°110.5°
C5C4S8110.3°111.0°
C5C4H4117.6°111.1°
C4C5H5111.1°110.7°
C4C5H5A111.1°110.7°
S8C4H4101.6°110.9°
C4S8C9104.6°104.5°
C4S8O33105.6°110.5°
C4S8O34109.6°110.5°
H5C5H5A107.8°110.7°
O7C6N16125.6°120.0°
C6N16C17123.4°120.0°
C6N16HN16118.3°120.0°
C9S8O33112.0°104.3°
C9S8O34109.0°104.3°
S8C9C10126.0°120.0°
S8C9C14118.7°120.0°
O33S8O34115.3°121.0°
C10C9C14115.3°120.0°
C9C10C11123.2°119.9°
C9C10CL121.5°120.1°
C9C14C13123.1°120.0°
C9C14H14118.5°120.0°
C11C10CL115.3°120.0°
C10C11C12120.7°120.0°
C10C11H11119.6°120.0°
C12C11H11119.6°120.0°
C11C12C13118.2°120.1°
C11C12H12120.9°120.0°
C13C12H12120.9°119.9°
C12C13C14119.6°120.0°
C12C13H13120.2°120.0°
C14C13H13120.2°120.0°
C13C14H14118.5°120.0°
C17N16HN16118.3°120.0°
N16C17C18115.0°115.6°
N16C17C19116.6°117.5°
N16C17C20119.0°117.5°
C18C17C19119.1°117.5°
C18C17C20117.2°117.5°
C17C18N35122.7°120.0°
C17C18H18118.6°120.0°
C19C17C2058.4°60.0°
C17C19C2060.7°60.0°
C17C19H19130.5°117.5°
C17C19H19A130.5°117.5°
C17C20C1960.9°60.0°
C17C20H20130.4°117.5°
C17C20H20A130.4°117.5°
N35C18H18118.6°120.0°
C18N35H35112.0°120.0°
C20C19H19130.5°117.5°
C20C19H19A130.5°117.5°
C19C20H20130.4°117.5°
C19C20H20A130.4°117.5°
H19C19H19A82.4°115.6°
H20C20H20A82.5°115.5°
O22C21C23124.2°120.0°
C21C23C24111.6°115.5°
C21C23C31114.9°117.5°
C21C23C32119.3°117.5°
C24C23C31122.1°117.5°
C24C23C32120.1°117.5°
C23C24C25119.6°120.0°
C23C24C29119.6°120.0°
C31C23C3260.0°60.1°
C23C31C3259.6°60.0°
C23C31H31131.1°117.5°
C23C31H31A131.1°117.5°
C23C32C3160.4°60.0°
C23C32H32130.7°117.5°
C23C32H32A130.7°117.5°
C25C24C29120.7°120.0°
C24C25C26118.8°120.1°
C24C25H25120.6°119.9°
C24C29C28119.2°120.0°
C24C29H29120.4°120.0°
C26C25H25120.6°120.0°
C25C26C27120.1°120.0°
C25C26H26120.0°120.0°
C27C26H26120.0°120.0°
C26C27C28122.0°120.0°
C26C27I30117.7°120.0°
C28C27I30120.3°120.0°
C27C28C29119.2°120.0°
C27C28H28120.4°120.0°
C29C28H28120.4°120.0°
C28C29H29120.4°120.0°
C32C31H31131.2°117.4°
C32C31H31A131.1°117.5°
C31C32H32130.7°117.5°
C31C32H32A130.7°117.5°
H31C31H31A81.4°115.6°
H32C32H32A82.1°115.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N2C1C5C6121.6°119.4°
N2C1C5H1120.4°119.5°
N2C1C6H1120.6°121.1°
C1N2C3C21166.9°179.9°
C1N2C3C417.4°24.1°
C1N2C3H3137.4°94.7°
C1N2C3H3A102.6°142.9°
N2C1C5C428.0°22.2°
N2C1C5H592.0°140.5°
N2C1C5H5A148.0°96.2°
N2C1C6O758.6°0.0°
N2C1C6N16125.0°180.0°
C1N2C21O225.0°4.7°
C1N2C21C23179.8°175.2°
C5C1C6H1123.5°121.1°
C5C1N2C36.2°1.1°
C5C1N2C21174.1°179.0°
C1C5C4C336.9°35.5°
C1C5C4H5120.0°118.4°
C1C5C4H5A120.0°118.4°
C1C5C4S886.3°153.6°
C1C5C4H4157.8°82.6°
C1C5H5H5A121.9°123.2°
C5C1C6O757.3°117.8°
C5C1C6N16119.2°62.2°
C6C1N2C3124.6°120.5°
C6C1N2C2167.5°59.6°
C6C1C5C4149.6°97.2°
C6C1C5H529.6°21.1°
C6C1C5H5A90.4°144.4°
C1C6O7N16175.9°180.0°
C1C6N16C17170.8°180.0°
C1C6N16HN169.3°0.0°
H1C1N2C3117.3°118.4°
H1C1N2C2150.6°61.5°
H1C1C5C492.4°141.7°
H1C1C5H5147.6°100.0°
H1C1C5H5A27.6°23.3°
H1C1C6O7179.2°121.1°
H1C1C6N164.4°58.9°
N2C3C4H3120.0°118.8°
N2C3C4H3A120.0°118.9°
N2C3H3H3A121.6°122.4°
N2C3C4C533.5°37.0°
N2C3C4S885.3°155.1°
N2C3C4H4158.7°81.1°
C3N2C21O22170.7°175.3°
C3N2C21C2314.0°4.9°
C21N2C3C4149.5°156.0°
C21N2C3H329.5°85.3°
C21N2C3H3A90.5°37.1°
N2C21O22C23175.0°179.9°
N2C21C23C2453.6°75.3°
N2C21C23C3190.9°139.1°
N2C21C23C32159.1°70.4°
C4C3H3H3A121.6°122.3°
C3C4C5S8123.2°118.1°
C3C4C5H4120.9°118.1°
C3C4S8H4121.5°123.8°
C3C4C5H583.1°153.9°
C3C4C5H5A156.9°82.9°
C3C4S8C963.2°174.1°
C3C4S8O33178.4°62.5°
C3C4S8O3453.6°74.2°
H3C3C4C5153.5°81.8°
H3C3C4S834.7°36.3°
H3C3C4H481.3°160.1°
H3AC3C4C586.6°155.9°
H3AC3C4S8154.7°86.1°
H3AC3C4H438.6°37.7°
C5C4S8H4125.5°124.0°
C4C5H5H5A121.9°123.2°
C5C4S8C9176.2°61.9°
C5C4S8O3365.4°49.7°
C5C4S8O3459.4°173.6°
S8C4C5H5153.7°88.0°
S8C4C5H5A33.7°35.2°
C4S8C9O33113.9°116.0°
C4S8C9O34117.2°116.1°
C4S8O33O34121.2°131.5°
C4S8C9C1068.9°64.4°
C4S8C9C14109.3°115.4°
H4C4C5H537.8°35.8°
H4C4C5H5A82.2°159.1°
H4C4S8C958.3°62.1°
H4C4S8O3360.1°173.7°
H4C4S8O34175.1°49.6°
O7C6N16C175.6°0.0°
O7C6N16HN16174.4°180.0°
C6N16C17HN16180.0°180.0°
C6N16C17C1887.1°34.4°
C6N16C17C1959.5°179.9°
C6N16C17C20126.4°111.3°
C9S8O33O34125.5°116.8°
S8C9C10C14178.2°179.7°
S8C9C10C11179.5°180.0°
S8C9C10CL2.2°0.1°
S8C9C14C13179.1°179.7°
S8C9C14H140.9°0.0°
O33S8C9C1045.0°179.6°
O33S8C9C14136.8°0.7°
O34S8C9C10173.9°51.7°
O34S8C9C147.9°128.5°
C9C10C11CL178.3°179.9°
C9C10C11C121.2°0.1°
C9C10C11H11178.8°180.0°
C10C9C14C130.7°0.5°
C10C9C14H14179.3°179.8°
C14C9C10C111.3°0.3°
C14C9C10CL179.5°179.8°
C9C14C13C120.0°0.6°
C9C14C13H14180.0°179.7°
C9C14C13H13180.0°179.7°
C10C11C12H11180.0°179.9°
C10C11C12C130.4°0.1°
C10C11C12H12179.5°180.0°
CLC10C11C12179.6°180.0°
CLC10C11H110.4°0.1°
C11C12C13H12180.0°179.9°
C11C12C13C140.1°0.3°
C11C12C13H13179.9°180.0°
H11C11C12C13179.6°180.0°
H11C11C12H120.5°0.1°
C12C13C14H13180.0°179.7°
C12C13C14H14180.0°179.7°
H12C12C13C14179.9°179.8°
H12C12C13H130.1°0.1°
H13C13C14H140.0°0.0°
N16C17C18C19145.6°145.6°
N16C17C18C20147.2°145.7°
N16C17C19C20109.2°107.5°
N16C17C18N35174.2°25.5°
N16C17C19H19130.9°145.0°
N16C17C19H19A10.8°0.0°
N16C17C20H2014.9°0.0°
N16C17C20H20A134.9°145.0°
N16C17C18H185.7°154.4°
HN16N16C17C1893.0°145.6°
HN16N16C17C19120.5°0.1°
HN16N16C17C2053.6°68.7°
C18C17C19C20105.7°107.5°
C17C18N35H18180.0°179.9°
C18C17C19H1914.3°0.1°
C18C17C19H19A134.3°145.0°
C18C17C20H20130.9°145.0°
C18C17C20H20A11.0°0.0°
C17C18N35H35180.0°180.0°
C19C17C18N3540.1°120.1°
C17C19C20H19120.0°107.4°
C17C19C20H19A120.0°107.5°
C17C19H19H19A138.4°145.7°
C19C17C20H20120.0°107.5°
C19C17C20H20A120.0°107.5°
C19C17C18H18139.9°60.0°
C20C17C18N3527.0°171.2°
C17C20H20H20A138.3°145.7°
C20C17C18H18153.0°8.7°
C20C19H19H19A138.4°145.7°
C19C20H20H20A138.3°145.7°
H19C19C20H20120.0°145.0°
H19C19C20H20A0.0°0.0°
H19AC19C20H200.0°0.0°
H19AC19C20H20A120.0°145.0°
O22C21C23C24121.2°104.8°
O22C21C23C3194.3°40.8°
O22C21C23C3226.0°109.5°
C21C23C24C31141.6°145.6°
C21C23C24C32146.9°145.7°
C21C23C31C32110.8°107.5°
C21C23C24C2554.6°74.5°
C21C23C24C29120.7°105.2°
C21C23C31H31129.2°145.0°
C21C23C31H31A9.2°0.0°
C21C23C32H3216.5°0.0°
C21C23C32H32A136.5°145.0°
C24C23C31C32108.8°107.5°
C23C24C25C29175.2°179.8°
C23C24C25C26178.7°180.0°
C23C24C25H251.3°0.0°
C23C24C29C28178.0°179.7°
C23C24C29H292.0°0.1°
C24C23C31H3111.2°0.1°
C24C23C31H31A131.2°145.0°
C24C23C32H32128.0°145.0°
C24C23C32H32A8.0°0.0°
C31C23C24C25163.8°139.9°
C31C23C24C2920.9°40.4°
C23C31C32H31120.0°107.5°
C23C31C32H31A120.0°107.5°
C23C31H31H31A138.7°145.7°
C31C23C32H32120.0°107.5°
C31C23C32H32A120.0°107.5°
C32C23C24C2592.3°71.1°
C32C23C24C2992.4°109.1°
C23C32H32H32A138.5°145.7°
C24C25C26H25180.0°179.9°
C24C25C26C272.4°0.0°
C24C25C26H26177.6°179.9°
C25C24C29C282.8°0.5°
C25C24C29H29177.2°179.7°
C29C24C25C263.5°0.3°
C29C24C25H25176.5°179.8°
C24C29C28C270.9°0.4°
C24C29C28H29180.0°179.9°
C24C29C28H28179.0°179.7°
C25C26C27H26180.0°179.9°
C25C26C27C280.6°0.0°
C25C26C27I30178.3°180.0°
H25C25C26C27177.6°179.9°
H25C25C26H262.4°0.0°
C26C27C28I30178.9°180.0°
C26C27C28C290.1°0.2°
C26C27C28H28179.9°180.0°
H26C26C27C28179.4°180.0°
H26C26C27I301.7°0.0°
C27C28C29H28180.0°179.9°
C27C28C29H29179.0°179.7°
I30C27C28C29179.0°179.8°
I30C27C28H281.0°0.0°
H28C28C29H291.0°0.2°
C32C31H31H31A138.7°145.7°
C31C32H32H32A138.4°145.7°
H31C31C32H32120.0°145.0°
H31C31C32H32A0.0°0.0°
H31AC31C32H320.0°0.0°
H31AC31C32H32A120.0°145.0°
H18C18N35H350.0°0.1°

223532

PDB entries from 2024-08-07

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