Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

YIT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NAACAIsing1.38Å1.33ÅAromatic
NAACAMsing1.38Å1.33ÅAromatic
CAICAHsing1.39Å1.38ÅAromatic
CAICAJdoub1.41Å1.40ÅAromatic
CAHCAGdoub1.38Å1.39ÅAromatic
CAGCALsing1.39Å1.39ÅAromatic
CALOBBsing1.36Å1.38Å
CALCAKdoub1.38Å1.41ÅAromatic
OBBCAOsing1.43Å1.45Å
CAKCAJsing1.40Å1.42ÅAromatic
CAJCANsing1.42Å1.34ÅAromatic
CANCAMdoub1.36Å1.34ÅAromatic
CAMCAPsing1.47Å1.55Å
CAPOBCdoub1.22Å1.23Å
CAPNABsing1.35Å1.35Å
NABCAQsing1.40Å1.34Å
CAQCAVsing1.39Å1.40ÅAromatic
CAQCARdoub1.39Å1.39ÅAromatic
CAVCAUdoub1.38Å1.38ÅAromatic
CAUCATsing1.40Å1.40ÅAromatic
CARCASsing1.38Å1.41ÅAromatic
CASCATdoub1.40Å1.41ÅAromatic
CATCAWsing1.47Å1.41Å
CAWCAXsing1.51Å1.52Å
CAWNACdoub1.30Å1.34Å
CAXCAZsing1.53Å1.54Å
CAZCBAsing1.53Å1.54Å
NACNADsing1.40Å1.26Å
NADCAYsing1.38Å1.35Å
CAYNAFdoub1.30Å1.33Å
CAYNAEsing1.38Å1.30Å
NAAHAAsing0.97Å1.00Å
CAHHAHsing1.08Å1.08Å
CAGHAGsing1.08Å1.08Å
CAKHAKsing1.08Å1.08Å
CAOHAO1sing1.09Å1.10Å
CAOHAO2sing1.09Å1.10Å
CAOHAO3sing1.09Å1.10Å
CANHANsing1.08Å1.08Å
NABHABsing0.97Å1.00Å
CAVHAVsing1.08Å1.08Å
CARHARsing1.08Å1.08Å
CAUHAUsing1.08Å1.08Å
CASHASsing1.08Å1.08Å
CAXHAX1sing1.09Å1.10Å
CAXHAX2sing1.09Å1.10Å
CAZHAZ1sing1.09Å1.10Å
CAZHAZ2sing1.09Å1.10Å
CBAHBA1sing1.09Å1.10Å
CBAHBA2sing1.09Å1.10Å
CBAHBA3sing1.09Å1.10Å
NADHADsing0.97Å1.00Å
NAEHAE1sing0.97Å1.00Å
NAEHAE2sing0.97Å1.00Å
NAFHAFsing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAINAACAM108.0°108.8°
NAACAICAH131.4°133.1°
NAACAICAJ108.1°107.3°
CAINAAHAA126.0°125.5°
NAACAMCAN109.4°109.1°
NAACAMCAP125.1°125.4°
CAMNAAHAA126.0°125.7°
CAHCAICAJ120.5°119.6°
CAICAHCAG120.0°120.1°
CAICAHHAH120.0°120.0°
CAICAJCAK119.6°119.7°
CAICAJCAN106.2°106.9°
CAHCAGCAL121.2°120.5°
CAGCAHHAH120.0°120.0°
CAHCAGHAG119.4°119.7°
CAGCALOBB116.0°119.8°
CAGCALCAK119.3°120.4°
CALCAGHAG119.4°119.7°
OBBCALCAK124.7°119.8°
CALOBBCAO118.2°117.0°
CALCAKCAJ119.5°119.7°
CALCAKHAK120.2°120.2°
OBBCAOHAO1109.5°109.5°
OBBCAOHAO2109.5°109.5°
OBBCAOHAO3109.5°109.4°
CAKCAJCAN134.2°133.3°
CAJCAKHAK120.3°120.1°
CAJCANCAM108.3°107.8°
CAJCANHAN125.8°126.0°
CANCAMCAP125.5°125.5°
CAMCANHAN125.9°126.1°
CAMCAPOBC119.7°120.0°
CAMCAPNAB116.4°120.0°
OBCCAPNAB123.6°120.0°
CAPNABCAQ126.9°120.0°
CAPNABHAB116.5°120.0°
NABCAQCAV116.4°119.9°
NABCAQCAR125.0°119.9°
CAQNABHAB116.6°120.0°
CAVCAQCAR118.5°120.2°
CAQCAVCAU122.3°120.0°
CAQCAVHAV118.9°120.0°
CAQCARCAS120.0°120.1°
CAQCARHAR120.0°120.0°
CAVCAUCAT119.8°119.9°
CAUCAVHAV118.9°120.0°
CAVCAUHAU120.1°120.0°
CAUCATCAS118.3°119.9°
CAUCATCAW120.8°120.1°
CATCAUHAU120.1°120.1°
CARCASCAT121.0°119.9°
CASCARHAR120.0°120.0°
CARCASHAS119.5°120.0°
CASCATCAW120.9°120.1°
CATCASHAS119.4°120.0°
CATCAWCAX122.3°120.0°
CATCAWNAC119.0°120.0°
CAXCAWNAC118.8°120.0°
CAWCAXCAZ111.5°109.5°
CAWCAXHAX1108.8°109.5°
CAWCAXHAX2108.8°109.5°
CAWNACNAD124.5°120.0°
CAXCAZCBA110.2°109.5°
CAZCAXHAX1108.8°109.4°
CAZCAXHAX2108.8°109.4°
CAXCAZHAZ1109.2°109.4°
CAXCAZHAZ2109.2°109.5°
CBACAZHAZ1109.2°109.4°
CBACAZHAZ2109.2°109.5°
CAZCBAHBA1109.5°109.5°
CAZCBAHBA2109.5°109.5°
CAZCBAHBA3109.5°109.4°
NACNADCAY120.3°120.0°
NACNADHAD119.8°120.0°
NADCAYNAF123.4°120.0°
NADCAYNAE120.5°120.0°
CAYNADHAD119.9°120.1°
NAFCAYNAE116.1°120.0°
CAYNAFHAF112.0°120.0°
CAYNAEHAE1120.0°120.0°
CAYNAEHAE2120.0°120.0°
HAO1CAOHAO2109.4°109.5°
HAO1CAOHAO3109.5°109.5°
HAO2CAOHAO3109.5°109.5°
HAX1CAXHAX2110.1°109.5°
HAZ1CAZHAZ2109.7°109.5°
HBA1CBAHBA2109.5°109.5°
HBA1CBAHBA3109.5°109.5°
HBA2CBAHBA3109.5°109.4°
HAE1NAEHAE2120.0°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAINAACAMHAA180.0°179.8°
NAACAICAHCAJ178.5°179.9°
NAACAICAHCAG179.4°180.0°
NAACAICAJCAK179.8°180.0°
NAACAICAJCAN0.3°0.0°
CAINAACAMCAN0.8°0.0°
CAINAACAMCAP178.5°180.0°
NAACAICAHHAH0.6°0.1°
CAMNAACAICAH179.3°180.0°
CAMNAACAICAJ0.7°0.0°
NAACAMCANCAJ0.6°0.0°
NAACAMCANCAP177.7°180.0°
NAACAMCAPOBC170.6°180.0°
NAACAMCAPNAB3.5°0.1°
NAACAMCANHAN179.4°180.0°
CAICAHCAGHAH180.0°179.9°
CAICAHCAGCAL0.5°0.1°
CAHCAICAJCAK1.0°0.0°
CAHCAICAJCAN179.1°180.0°
CAHCAINAAHAA0.7°0.2°
CAICAHCAGHAG179.5°180.0°
CAJCAICAHCAG1.0°0.1°
CAICAJCAKCAL0.6°0.0°
CAICAJCAKCAN179.9°180.0°
CAICAJCANCAM0.2°0.0°
CAJCAINAAHAA179.3°179.8°
CAJCAICAHHAH179.1°180.0°
CAICAJCAKHAK179.4°180.0°
CAICAJCANHAN179.9°180.0°
CAHCAGCALHAG180.0°179.9°
CAHCAGCALOBB179.2°180.0°
CAHCAGCALCAK0.1°0.1°
CAGCALOBBCAK179.3°180.0°
CAGCALOBBCAO168.8°0.0°
CAGCALCAKCAJ0.2°0.0°
CALCAGCAHHAH179.5°180.0°
CAGCALCAKHAK179.9°180.0°
OBBCALCAKCAJ179.1°180.0°
OBBCALCAGHAG0.8°0.0°
OBBCALCAKHAK0.9°0.0°
CALOBBCAOHAO1180.0°180.0°
CALOBBCAOHAO260.0°60.0°
CALOBBCAOHAO360.0°60.0°
CAKCALOBBCAO11.9°180.0°
CALCAKCAJHAK180.0°180.0°
CALCAKCAJCAN179.5°180.0°
CAKCALCAGHAG179.9°180.0°
OBBCAOHAO1HAO2120.0°120.0°
OBBCAOHAO1HAO3120.0°119.9°
OBBCAOHAO2HAO3120.0°120.0°
CAKCAJCANCAM179.7°180.0°
CAKCAJCANHAN0.3°0.0°
CAJCANCAMHAN180.0°180.0°
CAJCANCAMCAP178.2°180.0°
CANCAJCAKHAK0.4°0.0°
CANCAMCAPOBC6.7°0.0°
CANCAMCAPNAB179.2°180.0°
CANCAMNAAHAA179.2°179.7°
CAMCAPOBCNAB173.6°180.0°
CAMCAPNABCAQ175.6°174.9°
CAPCAMNAAHAA1.5°0.2°
CAPCAMCANHAN1.8°0.0°
CAMCAPNABHAB4.4°5.2°
OBCCAPNABCAQ1.8°5.1°
OBCCAPNABHAB178.2°174.9°
CAPNABCAQHAB180.0°179.9°
CAPNABCAQCAV172.2°146.7°
CAPNABCAQCAR10.6°33.7°
NABCAQCAVCAR177.4°179.7°
NABCAQCAVCAU177.2°180.0°
NABCAQCARCAS177.8°180.0°
NABCAQCAVHAV2.8°0.1°
NABCAQCARHAR2.2°0.1°
CAQCAVCAUHAV180.0°180.0°
CAQCAVCAUCAT1.4°0.0°
CAVCAQCARCAS0.6°0.3°
CAVCAQNABHAB7.8°33.3°
CAVCAQCARHAR179.4°179.7°
CAQCAVCAUHAU178.6°179.9°
CARCAQCAVCAU0.3°0.3°
CAQCARCASHAR180.0°180.0°
CAQCARCASCAT0.2°0.1°
CARCAQNABHAB169.4°146.4°
CARCAQCAVHAV179.8°179.8°
CAQCARCASHAS179.8°180.0°
CAVCAUCATHAU180.0°179.9°
CAVCAUCATCAS1.7°0.2°
CAVCAUCATCAW178.3°179.9°
CAUCATCASCAR0.9°0.2°
CAUCATCASCAW180.0°179.8°
CAUCATCAWCAX152.4°180.0°
CAUCATCAWNAC26.7°0.0°
CATCAUCAVHAV178.6°180.0°
CAUCATCASHAS179.1°179.8°
CARCASCATHAS180.0°180.0°
CARCASCATCAW179.1°180.0°
CASCATCAWCAX27.5°0.2°
CASCATCAWNAC153.3°179.8°
CATCASCARHAR179.7°180.0°
CASCATCAUHAU178.3°179.8°
CATCAWCAXNAC179.1°180.0°
CATCAWCAXCAZ113.4°95.5°
CATCAWNACNAD179.8°175.5°
CAWCATCAUHAU1.8°0.0°
CAWCATCASHAS0.9°0.0°
CATCAWCAXHAX1126.6°144.6°
CATCAWCAXHAX26.6°24.5°
CAWCAXCAZHAX1120.0°120.0°
CAWCAXCAZHAX2120.0°120.1°
CAWCAXCAZCBA179.3°175.1°
CAXCAWNACNAD1.0°4.4°
CAWCAXHAX1HAX2119.2°120.1°
CAWCAXCAZHAZ160.7°55.1°
CAWCAXCAZHAZ259.3°64.9°
NACCAWCAXCAZ67.4°84.6°
CAWNACNADCAY177.6°174.8°
NACCAWCAXHAX152.6°35.4°
NACCAWCAXHAX2172.6°155.5°
CAWNACNADHAD2.4°5.2°
CAXCAZCBAHAZ1120.0°120.0°
CAXCAZCBAHAZ2120.0°120.0°
CAZCAXHAX1HAX2119.2°119.9°
CAXCAZHAZ1HAZ2119.7°120.0°
CAXCAZCBAHBA1180.0°60.0°
CAXCAZCBAHBA260.0°180.0°
CAXCAZCBAHBA360.0°60.0°
CBACAZCAXHAX159.3°64.9°
CBACAZCAXHAX260.7°55.0°
CBACAZHAZ1HAZ2119.7°120.0°
CAZCBAHBA1HBA2120.0°120.0°
CAZCBAHBA1HBA3120.0°120.0°
CAZCBAHBA2HBA3120.0°119.9°
NACNADCAYHAD180.0°180.0°
NACNADCAYNAF178.8°0.1°
NACNADCAYNAE0.5°180.0°
NADCAYNAFNAE178.4°180.0°
NADCAYNAEHAE1178.4°0.0°
NADCAYNAEHAE21.5°179.9°
NADCAYNAFHAF178.4°180.0°
NAFCAYNADHAD1.1°180.0°
NAFCAYNAEHAE10.0°180.0°
NAFCAYNAEHAE2180.0°0.0°
NAECAYNADHAD179.5°0.0°
CAYNAEHAE1HAE2180.0°179.9°
NAECAYNAFHAF0.0°0.1°
HAHCAHCAGHAG0.5°0.1°
HAO1CAOHAO2HAO3120.0°120.0°
HAVCAVCAUHAU1.4°0.0°
HARCARCASHAS0.3°0.0°
HAX1CAXCAZHAZ1179.3°175.1°
HAX1CAXCAZHAZ260.7°55.1°
HAX2CAXCAZHAZ159.3°64.9°
HAX2CAXCAZHAZ2179.3°175.1°
HAZ1CAZCBAHBA160.0°60.0°
HAZ1CAZCBAHBA2180.0°60.0°
HAZ1CAZCBAHBA360.0°180.0°
HAZ2CAZCBAHBA160.0°180.0°
HAZ2CAZCBAHBA260.0°59.9°
HAZ2CAZCBAHBA3180.0°60.0°
HBA1CBAHBA2HBA3120.0°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon