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YID

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C19C18sing1.51Å1.51Å
C03C02sing1.50Å1.56Å
C03C04sing1.53Å1.47Å
O01C02doub1.21Å1.19Å
C02N31sing1.33Å1.45Å
C04C05sing1.53Å1.45Å
C18N17doub1.30Å1.33ÅAromatic
C18C14sing1.42Å1.41ÅAromatic
N17O16sing1.21Å1.37ÅAromatic
C05C06sing1.53Å1.48Å
N31C06sing1.46Å1.56Å
N31C32sing1.40Å1.42Å
N08C09sing1.36Å1.36ÅAromatic
N08C07doub1.30Å1.33ÅAromatic
C41C32doub1.39Å1.40ÅAromatic
C41C40sing1.38Å1.40ÅAromatic
C21C09doub1.40Å1.40ÅAromatic
C21C13sing1.39Å1.39ÅAromatic
O16C15sing1.34Å1.36ÅAromatic
C14C13sing1.48Å1.53Å
C14C15doub1.37Å1.35ÅAromatic
C06C07sing1.51Å1.50Å
C32C33sing1.39Å1.43ÅAromatic
C09C10sing1.41Å1.37ÅAromatic
C07N22sing1.36Å1.36ÅAromatic
C40C39doub1.38Å1.41ÅAromatic
C13C12doub1.40Å1.40ÅAromatic
C15C20sing1.51Å1.53Å
C10N22sing1.38Å1.36ÅAromatic
C10C11doub1.39Å1.41ÅAromatic
C33C34doub1.38Å1.40ÅAromatic
N22C23sing1.47Å1.51Å
C39C34sing1.38Å1.40ÅAromatic
C12C11sing1.38Å1.40ÅAromatic
C34C35sing1.51Å1.52Å
C23C24sing1.53Å1.52Å
C23C28sing1.53Å1.52Å
C24C25sing1.53Å1.53Å
C36C35sing1.53Å1.54Å
C35C37sing1.53Å1.52Å
C35C38sing1.53Å1.53Å
C28C27sing1.53Å1.55Å
C25C26sing1.53Å1.53Å
C26C27sing1.53Å1.53Å
C26O29sing1.43Å1.42Å
O29C30sing1.43Å1.40Å
C20H1sing1.09Å1.10Å
C20H2sing1.09Å1.10Å
C20H3sing1.09Å1.10Å
C21H4sing1.08Å1.08Å
C24H5sing1.09Å1.10Å
C24H6sing1.09Å1.10Å
C26H7sing1.09Å1.10Å
C28H8sing1.09Å1.10Å
C28H9sing1.09Å1.10Å
C03H10sing1.09Å1.10Å
C03H11sing1.09Å1.10Å
C04H12sing1.09Å1.10Å
C04H13sing1.09Å1.10Å
C05H14sing1.09Å1.10Å
C05H15sing1.09Å1.10Å
C06H16sing1.09Å1.10Å
C11H17sing1.08Å1.08Å
C12H18sing1.08Å1.08Å
C19H19sing1.09Å1.10Å
C19H20sing1.09Å1.10Å
C19H21sing1.09Å1.10Å
C23H22sing1.09Å1.10Å
C25H23sing1.09Å1.10Å
C25H24sing1.09Å1.10Å
C27H25sing1.09Å1.10Å
C27H26sing1.09Å1.10Å
C30H27sing1.09Å1.10Å
C30H28sing1.09Å1.10Å
C30H29sing1.09Å1.10Å
C33H30sing1.08Å1.08Å
C36H31sing1.09Å1.10Å
C36H32sing1.09Å1.10Å
C36H33sing1.09Å1.10Å
C37H34sing1.09Å1.10Å
C37H35sing1.09Å1.10Å
C37H36sing1.09Å1.10Å
C38H37sing1.09Å1.10Å
C38H38sing1.09Å1.10Å
C38H39sing1.09Å1.10Å
C39H40sing1.08Å1.08Å
C40H41sing1.08Å1.08Å
C41H42sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C19C18N17123.2°126.9°
C19C18C14129.2°126.8°
C18C19H19109.5°109.5°
C18C19H20109.5°109.5°
C18C19H21109.5°109.5°
C02C03C04112.4°109.9°
C03C02O01125.3°118.3°
C03C02N31116.4°123.5°
C02C03H10108.7°109.4°
C02C03H11108.7°109.4°
C03C04C05109.4°108.5°
C04C03H10108.7°109.4°
C04C03H11108.7°109.4°
C03C04H12109.5°109.7°
C03C04H13109.5°109.7°
O01C02N31118.2°118.2°
C02N31C06119.1°124.1°
C02N31C32121.3°118.0°
C04C05C06111.1°108.6°
C05C04H12109.5°109.7°
C05C04H13109.5°109.6°
C04C05H14109.1°109.7°
C04C05H15109.1°109.6°
N17C18C14107.6°106.3°
C18N17O16105.7°111.9°
C18C14C13125.1°128.2°
C18C14C15110.1°103.6°
N17O16C15113.1°111.8°
C05C06N31115.5°110.5°
C05C06C07108.9°109.3°
C06C05H14109.0°109.6°
C06C05H15109.0°109.5°
C05C06H16107.9°109.3°
C06N31C32119.5°118.0°
N31C06C07109.7°109.3°
N31C06H16106.9°109.2°
N31C32C41122.1°120.1°
N31C32C33115.8°120.0°
C09N08C07107.1°109.6°
N08C09C21128.5°133.5°
N08C09C10108.3°106.9°
N08C07C06124.0°124.9°
N08C07N22110.6°110.2°
C32C41C40116.5°119.9°
C41C32C33121.9°119.9°
C32C41H42121.8°120.0°
C41C40C39122.3°120.1°
C41C40H41118.8°120.0°
C40C41H42121.8°120.0°
C09C21C13118.7°119.7°
C21C09C10123.1°119.6°
C09C21H4120.6°120.2°
C21C13C14122.2°119.9°
C21C13C12119.8°120.2°
C13C21H4120.7°120.1°
O16C15C14103.4°106.3°
O16C15C20125.6°126.9°
C13C14C15124.7°128.2°
C14C13C12118.0°119.9°
C14C15C20130.6°126.8°
C06C07N22125.3°124.9°
C07C06H16107.7°109.3°
C32C33C34120.5°119.9°
C32C33H30119.8°120.1°
C09C10N22107.9°106.0°
C09C10C11118.1°120.1°
C07N22C10106.0°107.3°
C07N22C23123.1°126.4°
C40C39C34121.1°120.1°
C40C39H40119.4°119.9°
C39C40H41118.9°119.9°
C13C12C11120.4°120.4°
C13C12H18119.8°119.8°
C15C20H1109.5°109.5°
C15C20H2109.5°109.5°
C15C20H3109.5°109.5°
N22C10C11134.0°133.9°
C10N22C23130.8°126.3°
C10C11C12119.9°120.0°
C10C11H17120.1°119.9°
C33C34C39117.7°120.1°
C33C34C35120.2°120.0°
C34C33H30119.8°120.0°
N22C23C24109.2°109.5°
N22C23C28104.8°109.5°
N22C23H22110.6°109.5°
C39C34C35122.0°120.0°
C34C39H40119.4°119.9°
C12C11H17120.0°120.1°
C11C12H18119.8°119.8°
C34C35C36110.6°109.5°
C34C35C37111.3°109.5°
C34C35C38106.4°109.4°
C24C23C28111.3°109.5°
C23C24C25111.5°109.5°
C23C24H5108.9°109.4°
C23C24H6109.0°109.5°
C24C23H22110.4°109.5°
C23C28C27109.2°109.5°
C23C28H8109.6°109.4°
C23C28H9109.6°109.5°
C28C23H22110.3°109.5°
C24C25C26110.6°109.5°
C25C24H5109.0°109.5°
C25C24H6109.0°109.5°
C24C25H23109.2°109.5°
C24C25H24109.2°109.5°
C36C35C37115.6°109.5°
C36C35C38108.1°109.5°
C35C36H31109.5°109.5°
C35C36H32109.4°109.5°
C35C36H33109.5°109.4°
C37C35C38104.1°109.5°
C35C37H34109.5°109.5°
C35C37H35109.4°109.5°
C35C37H36109.5°109.4°
C35C38H37109.5°109.5°
C35C38H38109.5°109.4°
C35C38H39109.5°109.5°
C28C27C26116.9°109.5°
C27C28H8109.5°109.5°
C27C28H9109.5°109.5°
C28C27H25107.6°109.4°
C28C27H26107.5°109.5°
C25C26C27124.2°109.5°
C25C26O29113.6°109.5°
C25C26H799.3°109.5°
C26C25H23109.2°109.5°
C26C25H24109.2°109.4°
C27C26O29114.1°109.5°
C27C26H799.3°109.5°
C26C27H25107.6°109.5°
C26C27H26107.6°109.4°
C26O29C30109.0°114.0°
O29C26H7100.1°109.4°
O29C30H27109.5°109.5°
O29C30H28109.5°109.4°
O29C30H29109.5°109.5°
H1C20H2109.5°109.4°
H1C20H3109.5°109.5°
H2C20H3109.5°109.4°
H5C24H6109.5°109.5°
H8C28H9109.5°109.5°
H10C03H11109.5°109.4°
H12C04H13109.5°109.7°
H14C05H15109.5°109.8°
H19C19H20109.5°109.4°
H19C19H21109.5°109.5°
H20C19H21109.4°109.5°
H23C25H24109.4°109.5°
H25C27H26109.5°109.5°
H27C30H28109.5°109.5°
H27C30H29109.4°109.5°
H28C30H29109.5°109.4°
H31C36H32109.5°109.5°
H31C36H33109.5°109.5°
H32C36H33109.5°109.5°
H34C37H35109.5°109.5°
H34C37H36109.5°109.5°
H35C37H36109.5°109.5°
H37C38H38109.5°109.5°
H37C38H39109.5°109.5°
H38C38H39109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C19C18N17C14178.0°179.7°
C19C18N17O16179.3°179.9°
C19C18C14C130.1°0.3°
C19C18C14C15177.2°179.8°
C18C19H19H20120.0°120.0°
C18C19H19H21120.0°120.0°
C18C19H20H21120.0°120.1°
C02C03C04H10120.4°120.1°
C02C03C04H11120.4°120.1°
C03C02O01N31174.5°179.7°
C02C03C04C0561.0°49.0°
C03C02N31C064.2°2.4°
C03C02N31C32179.5°177.8°
C02C03H10H11118.6°119.8°
C02C03C04H1259.0°70.8°
C02C03C04H13179.0°168.6°
C04C03C02O01156.4°162.7°
C04C03C02N3129.0°17.7°
C03C04C05H12120.0°119.8°
C03C04C05H13120.0°119.7°
C03C04C05C0667.7°67.5°
C04C03H10H11118.7°119.8°
C03C04H12H13120.0°120.6°
C03C04C05H14172.1°172.7°
C03C04C05H1552.6°52.1°
O01C02N31C06179.2°178.0°
O01C02N31C325.5°1.9°
O01C02C03H1035.9°42.6°
O01C02C03H1183.2°77.1°
C02N31C06C0510.3°19.2°
C02N31C06C32175.3°179.9°
C02N31C32C4178.1°112.8°
C02N31C06C07133.7°139.5°
C02N31C32C33107.2°67.0°
N31C02C03H10149.5°137.8°
N31C02C03H1191.4°102.5°
C02N31C06H16109.8°101.0°
C04C05C06H14120.3°119.8°
C04C05C06H15120.2°119.7°
C04C05C06N3141.3°50.8°
C04C05C06C07165.2°171.0°
C05C04C03H10178.6°169.0°
C05C04C03H1159.4°71.2°
C05C04H12H13120.0°120.4°
C04C05H14H15119.3°120.5°
C04C05C06H1678.2°69.4°
C18N17O16C152.9°0.5°
N17C18C14C13177.7°180.0°
N17C18C14C150.6°0.1°
N17C18C19H190.0°90.0°
N17C18C19H20120.0°150.0°
N17C18C19H21120.0°30.0°
C14C18N17O161.3°0.3°
C18C14C13C2144.3°64.8°
C18C14C15O162.2°0.2°
C18C14C13C15176.8°179.9°
C18C14C13C12134.3°115.0°
C18C14C15C20175.8°180.0°
C14C18C19H19177.5°89.6°
C14C18C19H2057.5°30.3°
C14C18C19H2162.5°150.4°
N17O16C15C143.1°0.4°
N17O16C15C20177.1°179.8°
C05C06N31C07123.5°120.3°
C05C06N31H16120.1°120.2°
C05C06N31C32174.4°161.0°
C05C06C07N0882.3°75.0°
C05C06C07H16116.7°119.5°
C05C06C07N2294.5°105.0°
C06C05C04H1252.3°52.3°
C06C05C04H13172.4°172.8°
C06C05H14H15119.2°120.3°
N31C06C07N0845.0°46.0°
C06N31C32C41106.7°67.1°
N31C06C07H16116.0°119.4°
C06N31C32C3368.1°113.2°
N31C06C07N22138.2°133.9°
N31C06C05H14161.5°170.6°
N31C06C05H1579.0°69.0°
N31C32C41C33174.4°179.8°
N31C32C41C40175.1°179.7°
C32N31C06C0750.9°40.7°
N31C32C33C34174.9°179.7°
C32N31C06H1665.6°78.8°
N31C32C33H305.1°0.3°
N31C32C41H424.9°0.2°
N08C09C21C10175.0°180.0°
N08C09C21C13177.1°179.9°
C09N08C07C06178.7°180.0°
C09N08C07N224.1°0.0°
N08C09C10N222.4°0.0°
N08C09C10C11176.7°179.8°
N08C09C21H42.9°0.0°
C07N08C09C21179.6°180.0°
N08C07C06N22176.8°180.0°
C07N08C09C104.0°0.0°
N08C07N22C102.6°0.0°
N08C07N22C23179.6°179.8°
N08C07C06H16161.0°165.5°
C32C41C40H42180.0°179.9°
C32C41C40C390.7°0.0°
C41C32C33C340.1°0.0°
C41C32C33H30179.9°180.0°
C32C41C40H41179.3°180.0°
C40C41C32C330.7°0.1°
C41C40C39H41180.0°180.0°
C41C40C39C342.9°0.0°
C41C40C39H40177.1°179.9°
C09C21C13H4180.0°179.9°
C09C21C13C14179.1°179.9°
C09C21C13C122.3°0.4°
C21C09C10N22178.3°180.0°
C21C09C10C110.8°0.2°
C21C13C14C12178.7°179.8°
C21C13C14C15138.9°115.3°
C13C21C09C102.0°0.1°
C21C13C12C111.4°0.3°
C21C13C12H18178.6°180.0°
O16C15C14C13179.4°179.7°
O16C15C14C20173.6°179.7°
O16C15C20H10.0°90.3°
O16C15C20H2120.0°29.7°
O16C15C20H3120.0°149.7°
C13C14C15C207.1°0.1°
C14C13C12C11179.9°180.0°
C14C13C21H40.9°0.0°
C14C13C12H180.1°0.3°
C15C14C13C1242.4°64.9°
C14C15C20H1172.3°90.0°
C14C15C20H252.3°150.0°
C14C15C20H367.7°30.0°
C06C07N22C10179.8°180.0°
C06C07N22C233.3°0.2°
C07C06C05H1474.5°69.2°
C07C06C05H1545.0°51.3°
C32C33C34H30180.0°180.0°
C32C33C34C391.9°0.0°
C32C33C34C35177.9°180.0°
C33C32C41H42179.3°180.0°
C09C10N22C070.1°0.0°
C09C10N22C11178.9°179.7°
C09C10N22C23176.7°179.8°
C09C10C11C120.2°0.3°
C10C09C21H4178.0°180.0°
C09C10C11H17179.8°179.7°
C07N22C10C23176.6°179.8°
C07N22C10C11179.0°179.7°
C07N22C23C24125.3°120.3°
C07N22C23C28115.3°119.8°
N22C07C06H1622.2°14.5°
C07N22C23H223.6°0.3°
C40C39C34C333.4°0.1°
C40C39C34H40180.0°179.9°
C40C39C34C35179.3°180.0°
C39C40C41H42179.3°179.9°
C13C12C11C100.1°0.0°
C13C12C11H18180.0°179.7°
C12C13C21H4177.7°179.7°
C13C12C11H17179.9°179.9°
C15C20H1H2120.0°120.0°
C15C20H1H3120.0°120.1°
C15C20H2H3120.0°120.0°
N22C10C11C12179.0°180.0°
C10N22C23C2458.6°59.9°
C10N22C23C2860.8°60.0°
N22C10C11H171.0°0.0°
C10N22C23H22179.7°180.0°
C11C10N22C234.4°0.1°
C10C11C12H17180.0°180.0°
C10C11C12H18179.8°179.6°
C33C34C39C35175.9°180.0°
C33C34C35C3649.6°60.0°
C33C34C35C37179.6°60.0°
C33C34C35C3867.6°180.0°
C33C34C39H40176.6°180.0°
N22C23C24C28115.3°120.0°
N22C23C24H22121.9°120.0°
N22C23C28H22119.1°120.0°
N22C23C24C25173.5°60.0°
N22C23C28C27175.5°60.0°
N22C23C24H553.2°180.0°
N22C23C24H666.2°60.0°
N22C23C28H855.5°60.0°
N22C23C28H964.6°180.0°
C39C34C35C36126.1°120.1°
C39C34C35C373.9°119.9°
C39C34C35C38116.7°0.0°
C39C34C33H30178.1°180.0°
C34C39C40H41177.1°180.0°
C34C35C36C37127.7°120.0°
C34C35C36C38116.2°120.0°
C34C35C37C38114.2°119.9°
C35C34C33H302.1°0.0°
C34C35C36H31180.0°60.0°
C34C35C36H3260.0°180.0°
C34C35C36H3360.0°60.0°
C34C35C37H34180.0°60.0°
C34C35C37H3560.0°180.0°
C34C35C37H3660.0°60.0°
C34C35C38H37180.0°60.1°
C34C35C38H3860.0°180.0°
C34C35C38H3960.0°60.0°
C35C34C39H400.7°0.1°
C24C23C28H22122.9°120.0°
C23C24C25H5120.3°120.0°
C23C24C25H6120.3°120.0°
C24C23C28C2757.5°60.0°
C23C24C25C2637.5°60.0°
C23C24H5H6119.1°120.0°
C24C23C28H862.4°180.0°
C24C23C28H9177.4°60.1°
C23C24C25H2382.7°180.0°
C23C24C25H24157.7°60.0°
C28C23C24C2571.3°60.0°
C23C28C27H8120.0°120.0°
C23C28C27H9119.9°120.0°
C23C28C27C2617.1°60.0°
C28C23C24H5168.5°60.0°
C28C23C24H649.0°180.0°
C23C28H8H9120.2°120.0°
C23C28C27H25138.1°180.0°
C23C28C27H26104.0°60.0°
C24C25C26H23120.2°120.0°
C24C25C26H24120.2°120.0°
C24C25C26C271.9°60.0°
C24C25C26O29148.5°180.0°
C25C24H5H6119.1°120.0°
C24C25C26H7106.2°60.0°
C25C24C23H2251.6°180.0°
C24C25H23H24119.5°120.1°
C36C35C37C38118.4°120.1°
C35C36H31H32120.0°120.0°
C35C36H31H33120.0°120.0°
C35C36H32H33120.0°119.9°
C36C35C37H3452.7°179.9°
C36C35C37H35172.7°60.0°
C36C35C37H3667.3°60.0°
C36C35C38H3761.1°59.9°
C36C35C38H3858.9°60.0°
C36C35C38H39178.8°180.0°
C37C35C36H3152.3°60.0°
C37C35C36H3267.7°60.0°
C37C35C36H33172.4°180.0°
C35C37H34H35120.0°120.0°
C35C37H34H36120.0°119.9°
C35C37H35H36120.0°119.9°
C37C35C38H3762.3°180.0°
C37C35C38H38177.6°60.0°
C37C35C38H3957.7°59.9°
C38C35C36H3163.9°180.0°
C38C35C36H32176.2°60.0°
C38C35C36H3356.2°60.0°
C38C35C37H3465.7°60.0°
C38C35C37H3554.2°60.1°
C38C35C37H36174.3°180.0°
C35C38H37H38120.0°119.9°
C35C38H37H39120.0°120.1°
C35C38H38H39120.0°120.0°
C28C27C26C2512.4°60.0°
C28C27C26H25121.0°120.0°
C28C27C26H26121.1°120.0°
C28C27C26O29158.8°180.0°
C28C27C26H795.7°60.0°
C27C28H8H9120.1°120.0°
C27C28C23H2265.4°180.0°
C28C27H25H26116.6°120.1°
C25C26C27O29146.5°120.0°
C25C26C27H7108.0°120.0°
C25C26O29H7104.8°120.0°
C25C26O29C30172.6°90.0°
C26C25C24H5157.8°60.0°
C26C25C24H682.8°180.0°
C26C25H23H24119.5°120.0°
C25C26C27H25108.7°180.0°
C25C26C27H26133.4°60.0°
C27C26O29H7105.1°120.0°
C27C26O29C3037.3°150.0°
C26C27C28H8102.9°180.0°
C26C27C28H9137.0°60.0°
C27C26C25H23122.1°180.0°
C27C26C25H24118.3°60.0°
C26C27H25H26116.7°120.0°
O29C26C25H2391.3°60.0°
O29C26C25H2428.3°60.0°
O29C26C27H2537.8°60.0°
O29C26C27H2680.1°60.0°
C26O29C30H27180.0°180.0°
C26O29C30H2860.0°60.0°
C26O29C30H2960.0°60.0°
C30O29C26H767.7°30.0°
O29C30H27H28120.0°120.0°
O29C30H27H29120.0°120.0°
O29C30H28H29120.0°119.9°
H1C20H2H3120.0°120.0°
H5C24C23H2268.7°60.0°
H5C24C25H2337.6°60.0°
H5C24C25H2482.1°180.0°
H6C24C23H22171.9°60.0°
H6C24C25H23157.0°60.0°
H6C24C25H2437.4°60.0°
H7C26C25H2314.0°60.0°
H7C26C25H24133.6°179.9°
H7C26C27H25143.3°59.9°
H7C26C27H2625.4°180.0°
H8C28C23H22174.6°60.0°
H8C28C27H2518.2°60.0°
H8C28C27H26136.0°60.0°
H9C28C23H2254.5°59.9°
H9C28C27H25101.9°60.0°
H9C28C27H2615.9°180.0°
H10C03C04H1261.5°49.3°
H10C03C04H1358.6°71.3°
H11C03C04H12179.4°169.0°
H11C03C04H1360.6°48.5°
H12C04C05H1467.9°67.5°
H12C04C05H15172.5°171.9°
H13C04C05H1452.1°53.0°
H13C04C05H1567.4°67.6°
H14C05C06H1642.0°50.4°
H15C05C06H16161.5°170.9°
H17C11C12H180.2°0.4°
H19C19H20H21120.0°120.0°
H27C30H28H29120.0°120.0°
H31C36H32H33120.0°120.0°
H34C37H35H36120.0°120.0°
H37C38H38H39120.0°120.0°
H40C39C40H412.9°0.1°
H41C40C41H420.7°0.1°

248335

PDB entries from 2026-01-28

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