Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

YI8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CC1doub1.35Å1.39ÅAromatic
CC13sing1.41Å1.34ÅAromatic
C1C2sing1.41Å1.39ÅAromatic
NC13doub1.31Å1.33ÅAromatic
NOsing1.21Å1.35ÅAromatic
C13C4sing1.48Å1.35ÅAromatic
N4N3sing1.28Å1.35ÅAromatic
N4C14doub1.32Å1.34ÅAromatic
C2C14sing1.48Å1.36Å
C2C3doub1.38Å1.41ÅAromatic
OC5sing1.34Å1.35ÅAromatic
N3N2doub1.29Å1.34ÅAromatic
C14N1sing1.36Å1.33ÅAromatic
C4C3sing1.40Å1.36ÅAromatic
C4C5doub1.40Å1.37ÅAromatic
C5C6sing1.47Å1.36Å
N1N2sing1.41Å1.36ÅAromatic
C6C11doub1.40Å1.40ÅAromatic
C6C7sing1.40Å1.40ÅAromatic
C11C10sing1.38Å1.40ÅAromatic
C7C8doub1.38Å1.40ÅAromatic
C10C9doub1.38Å1.40ÅAromatic
C8C9sing1.38Å1.40ÅAromatic
C9C12sing1.51Å1.43Å
FC12sing1.40Å1.25Å
C12F2sing1.40Å1.31Å
C12F1sing1.40Å1.37Å
C11H1sing1.08Å1.08Å
C7H2sing1.08Å1.08Å
C8H3sing1.08Å1.08Å
C10H4sing1.08Å1.08Å
C3H5sing1.08Å1.08Å
CH6sing1.08Å1.08Å
C1H7sing1.08Å1.08Å
N1H8sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1CC13121.0°119.8°
CC1C2119.4°121.8°
C1CH6119.5°120.1°
CC1H7120.3°119.1°
CC13N128.3°136.3°
CC13C4122.2°118.6°
C13CH6119.5°120.1°
C1C2C14120.3°119.4°
C1C2C3116.7°121.2°
C2C1H7120.3°119.1°
C13NO107.9°112.5°
NC13C4109.6°105.1°
NOC5108.2°113.6°
C13C4C3118.1°119.4°
C13C4C5106.5°103.0°
N3N4C14108.5°110.5°
N4N3N2108.0°110.4°
N4C14C2126.5°126.5°
N4C14N1107.8°107.0°
C14C2C3122.9°119.4°
C2C14N1125.8°126.4°
C2C3C4122.6°119.2°
C2C3H5118.7°120.4°
OC5C4107.8°105.8°
OC5C6120.2°127.1°
N3N2N1106.9°106.9°
C14N1N2108.8°105.1°
C14N1H8125.6°127.5°
C3C4C5135.5°137.6°
C4C3H5118.7°120.4°
C4C5C6131.9°127.1°
C5C6C11118.1°120.1°
C5C6C7125.3°120.2°
N2N1H8125.6°127.4°
C11C6C7116.6°119.7°
C6C11C10122.0°119.8°
C6C11H1119.0°120.1°
C6C7C8121.6°119.8°
C6C7H2119.2°120.1°
C11C10C9121.0°120.2°
C10C11H1119.0°120.1°
C11C10H4119.5°120.0°
C7C8C9121.3°120.2°
C8C7H2119.2°120.1°
C7C8H3119.4°119.9°
C10C9C8117.4°120.3°
C10C9C12121.3°119.9°
C9C10H4119.5°119.9°
C8C9C12121.3°119.8°
C9C8H3119.3°119.9°
C9C12F110.4°109.4°
C9C12F2111.7°109.5°
C9C12F1111.0°109.5°
FC12F2107.1°109.5°
FC12F1108.3°109.5°
F2C12F1108.2°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1CC13H6180.0°179.4°
CC1C2H7180.0°179.4°
C1CC13N179.5°179.7°
C1CC13C40.4°0.0°
CC1C2C14178.8°180.0°
CC1C2C30.4°0.9°
C13CC1C20.0°0.6°
CC13NC4179.2°179.7°
CC13NO179.9°179.7°
CC13C4C30.3°0.3°
CC13C4C5180.0°179.8°
C13CC1H7180.0°180.0°
C1C2C14N41.7°179.7°
C1C2C14C3179.1°179.2°
C1C2C14N1176.4°0.1°
C1C2C3C40.4°0.6°
C1C2C3H5179.6°179.5°
C2C1CH6180.0°180.0°
C13NOC50.3°0.1°
NC13C4C3179.6°180.0°
NC13C4C50.8°0.0°
NC13CH60.5°0.3°
ONC13C40.7°0.0°
NOC5C40.2°0.1°
NOC5C6178.0°180.0°
C13C4C3C20.1°0.0°
C13C4C5O0.6°0.0°
C13C4C3C5179.5°179.9°
C13C4C5C6178.1°179.9°
C13C4C3H5179.9°179.9°
C4C13CH6179.6°179.4°
N3N4C14C2178.4°179.9°
N3N4C14N10.1°0.4°
N4N3N2N10.7°0.3°
N4C14C2N1178.1°179.7°
N4C14C2C3179.2°1.1°
C14N4N3N20.4°0.4°
N4C14N1N20.6°0.3°
N4C14N1H8179.5°179.8°
C14C2C3C4178.8°179.7°
C2C14N1N2178.9°180.0°
C14C2C3H51.2°0.4°
C14C2C1H71.2°0.5°
C2C14N1H81.1°0.1°
C3C2C14N12.8°179.2°
C2C3C4H5180.0°179.9°
C2C3C4C5179.4°179.9°
C3C2C1H7179.7°179.7°
OC5C4C3179.9°180.0°
OC5C4C6177.5°179.9°
OC5C6C1125.8°46.4°
OC5C6C7154.6°133.6°
N3N2N1C140.8°0.0°
N3N2N1H8179.2°180.0°
C14N1N2H8180.0°180.0°
C3C4C5C62.4°0.1°
C4C5C6C11151.5°133.7°
C4C5C6C728.1°46.3°
C5C4C3H50.6°0.0°
C5C6C11C7179.6°180.0°
C5C6C11C10179.7°180.0°
C5C6C7C8179.1°180.0°
C5C6C11H10.3°0.3°
C5C6C7H20.9°0.3°
C6C11C10H1180.0°179.8°
C11C6C7C80.5°0.0°
C6C11C10C90.4°0.2°
C11C6C7H2179.5°179.7°
C6C11C10H4179.6°179.7°
C7C6C11C100.1°0.0°
C6C7C8H2180.0°179.7°
C6C7C8C90.8°0.3°
C7C6C11H1179.9°179.7°
C6C7C8H3179.2°179.7°
C11C10C9H4180.0°179.9°
C11C10C9C80.1°0.5°
C11C10C9C12180.0°180.0°
C7C8C9C100.5°0.5°
C7C8C9H3180.0°179.9°
C7C8C9C12179.4°180.0°
C10C9C8C12179.9°179.5°
C10C9C12F3.0°29.4°
C10C9C12F2122.1°90.5°
C10C9C12F1117.1°149.5°
C9C10C11H1179.6°180.0°
C10C9C8H3179.5°179.4°
C8C9C12F177.1°150.0°
C8C9C12F258.1°90.0°
C8C9C12F162.8°30.0°
C9C8C7H2179.2°180.0°
C8C9C10H4179.9°179.4°
C9C12FF2121.8°120.0°
C9C12FF1121.7°120.0°
C9C12F2F1122.4°120.0°
C12C9C8H30.6°0.1°
C12C9C10H40.0°0.0°
FC12F2F1116.5°120.0°
H1C11C10H40.4°0.0°
H2C7C8H30.8°0.1°
H6CC1H70.0°0.6°

250835

PDB entries from 2026-03-18

PDB statisticsPDBj update infoContact PDBjnumon