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YI6

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C6C7sing1.38Å1.37ÅAromatic
C6C5doub1.38Å1.38ÅAromatic
C13C12doub1.38Å1.38ÅAromatic
C13C5sing1.38Å1.39ÅAromatic
C7C8doub1.39Å1.38ÅAromatic
C12C8sing1.39Å1.39ÅAromatic
C5C4sing1.51Å1.48Å
C8O9sing1.36Å1.38Å
C2C4sing1.51Å1.55Å
C2O3doub1.21Å1.22Å
C2O1sing1.34Å1.27Å
C11C10sing1.53Å1.50Å
C10O9sing1.43Å1.42Å
C6H6sing1.08Å1.08Å
C7H7sing1.08Å1.08Å
C13H13sing1.08Å1.08Å
C12H12sing1.08Å1.08Å
C4H41Csing1.09Å1.10Å
C4H42Csing1.09Å1.10Å
O1H1sing0.97Å0.95Å
C11H111sing1.09Å1.10Å
C11H112sing1.09Å1.10Å
C11H113sing1.09Å1.10Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C7C6C5119.7°120.1°
C6C7C8118.0°119.9°
C7C6H6120.2°120.0°
C6C7H7121.0°120.0°
C6C5C13122.1°120.1°
C6C5C4115.2°119.9°
C5C6H6120.1°120.0°
C12C13C5118.9°120.1°
C13C12C8117.8°120.0°
C12C13H13120.6°120.0°
C13C12H12121.1°120.0°
C13C5C4122.7°120.0°
C5C13H13120.6°120.0°
C7C8C12123.5°119.9°
C7C8O9112.0°120.0°
C8C7H7121.0°120.1°
C12C8O9124.4°120.1°
C8C12H12121.1°120.0°
C5C4C2111.3°109.5°
C5C4H41C109.0°109.5°
C5C4H42C109.0°109.5°
C8O9C10109.0°117.0°
C4C2O3116.5°120.0°
C4C2O1120.5°120.0°
C2C4H41C109.0°109.5°
C2C4H42C109.0°109.5°
O3C2O1123.0°120.0°
C2O1H1109.5°117.0°
C11C10O9106.1°109.5°
C10C11H111109.5°109.5°
C10C11H112109.5°109.5°
C10C11H113109.5°109.5°
C11C10H101110.3°109.5°
C11C10H102110.3°109.5°
O9C10H101110.3°109.5°
O9C10H102110.3°109.4°
H41CC4H42C109.5°109.4°
H111C11H112109.4°109.4°
H111C11H113109.5°109.5°
H112C11H113109.5°109.4°
H101C10H102109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C7C6C5H6180.0°180.0°
C7C6C5C132.1°0.0°
C6C7C8H7180.0°179.9°
C6C7C8C120.1°0.1°
C7C6C5C4179.3°180.0°
C6C7C8O9179.5°179.7°
C6C5C13C121.0°0.0°
C6C5C13C4177.1°180.0°
C5C6C7C81.5°0.1°
C6C5C4C253.3°90.0°
C5C6C7H7178.5°179.9°
C6C5C13H13179.0°180.0°
C6C5C4H41C173.6°30.0°
C6C5C4H42C67.0°149.9°
C12C13C5H13180.0°180.0°
C13C12C8C70.9°0.1°
C13C12C8H12180.0°179.6°
C12C13C5C4178.1°180.0°
C13C12C8O9179.6°179.8°
C5C13C12C80.5°0.0°
C13C5C4C2129.4°90.0°
C13C5C6H6177.9°180.0°
C5C13C12H12179.5°179.7°
C13C5C4H41C9.1°150.0°
C13C5C4H42C110.3°30.1°
C7C8C12O9179.5°179.8°
C7C8O9C10174.1°0.2°
C8C7C6H6178.4°179.9°
C7C8C12H12179.0°179.7°
C12C8O9C106.4°180.0°
C12C8C7H7179.9°180.0°
C8C12C13H13179.5°180.0°
C5C4C2H41C120.3°120.1°
C5C4C2H42C120.3°120.0°
C5C4C2O375.2°0.0°
C5C4C2O1103.8°180.0°
C4C5C6H60.6°0.0°
C4C5C13H131.9°0.1°
C5C4H41CH42C119.2°120.0°
C8O9C10C11172.2°180.0°
O9C8C7H70.5°0.1°
O9C8C12H120.4°0.1°
C8O9C10H10152.7°60.0°
C8O9C10H10268.3°60.0°
C4C2O3O1179.0°180.0°
C2C4H41CH42C119.1°120.0°
C4C2O1H1179.0°180.0°
O3C2C4H41C45.1°120.1°
O3C2C4H42C164.5°120.0°
O3C2O1H10.0°0.0°
O1C2C4H41C135.9°60.0°
O1C2C4H42C16.4°59.9°
C11C10O9H101119.4°120.0°
C11C10O9H102119.5°120.0°
C10C11H111H112120.0°120.0°
C10C11H111H113120.0°120.1°
C10C11H112H113120.0°120.0°
C11C10H101H102121.6°120.0°
O9C10C11H111180.0°60.0°
O9C10C11H11260.0°60.0°
O9C10C11H11360.0°180.0°
O9C10H101H102121.6°120.0°
H6C6C7H71.6°0.1°
H13C13C12H120.5°0.4°
H111C11H112H113120.0°120.0°
H111C11C10H10160.5°180.0°
H111C11C10H10260.5°60.0°
H112C11C10H10159.4°60.0°
H112C11C10H102179.5°180.0°
H113C11C10H101179.4°60.0°
H113C11C10H10259.5°60.1°

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PDB entries from 2024-07-17

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