YI5
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | N2 | doub | 1.27Å | 1.25Å | Aromatic |
N1 | S1 | sing | 1.57Å | 1.67Å | Aromatic |
N2 | C3 | sing | 1.32Å | 1.36Å | Aromatic |
C3 | C4 | doub | 1.39Å | 1.41Å | Aromatic |
C3 | C6 | sing | 1.48Å | 1.41Å | Aromatic |
C4 | C7 | sing | 1.48Å | 1.39Å | Aromatic |
C4 | S1 | sing | 1.77Å | 1.69Å | Aromatic |
C6 | C21 | sing | 1.40Å | 1.40Å | Aromatic |
C6 | C25 | doub | 1.39Å | 1.40Å | Aromatic |
C7 | C12 | sing | 1.40Å | 1.39Å | Aromatic |
C7 | C16 | doub | 1.40Å | 1.39Å | Aromatic |
C12 | C13 | doub | 1.38Å | 1.40Å | Aromatic |
C13 | C14 | sing | 1.39Å | 1.40Å | Aromatic |
C13 | OAN | sing | 1.36Å | 1.36Å | |
C14 | C15 | doub | 1.39Å | 1.39Å | Aromatic |
C14 | O33 | sing | 1.36Å | 1.36Å | |
C15 | C16 | sing | 1.38Å | 1.38Å | Aromatic |
C21 | C22 | doub | 1.38Å | 1.40Å | Aromatic |
C21 | O30 | sing | 1.36Å | 1.35Å | |
C22 | C23 | sing | 1.39Å | 1.39Å | Aromatic |
C23 | C24 | doub | 1.39Å | 1.40Å | Aromatic |
C23 | O29 | sing | 1.36Å | 1.37Å | |
C24 | C25 | sing | 1.38Å | 1.41Å | Aromatic |
C24 | CL | sing | 1.74Å | 1.74Å | |
O33 | C34 | sing | 1.43Å | 1.44Å | |
CAB | OAN | sing | 1.43Å | 1.45Å | |
C25 | H25 | sing | 1.08Å | 1.08Å | |
C12 | H12 | sing | 1.08Å | 1.08Å | |
C16 | H16 | sing | 1.08Å | 1.08Å | |
C15 | H15 | sing | 1.08Å | 1.08Å | |
C22 | H22 | sing | 1.08Å | 1.08Å | |
O30 | H30 | sing | 0.97Å | 0.95Å | |
O29 | H29 | sing | 0.97Å | 0.95Å | |
C34 | H341 | sing | 1.09Å | 1.10Å | |
C34 | H342 | sing | 1.09Å | 1.10Å | |
C34 | H343 | sing | 1.09Å | 1.10Å | |
CAB | HAB1 | sing | 1.09Å | 1.10Å | |
CAB | HAB2 | sing | 1.09Å | 1.10Å | |
CAB | HAB3 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N2 | N1 | S1 | 110.0° | 110.0° |
N1 | N2 | C3 | 118.0° | 119.9° |
N1 | S1 | C4 | 93.3° | 95.4° |
N2 | C3 | C4 | 109.9° | 111.5° |
N2 | C3 | C6 | 122.6° | 124.2° |
C4 | C3 | C6 | 123.1° | 124.3° |
C3 | C4 | C7 | 128.1° | 128.4° |
C3 | C4 | S1 | 106.2° | 103.1° |
C3 | C6 | C21 | 121.9° | 120.0° |
C3 | C6 | C25 | 119.5° | 120.1° |
C7 | C4 | S1 | 121.2° | 128.4° |
C4 | C7 | C12 | 123.1° | 120.1° |
C4 | C7 | C16 | 117.3° | 120.0° |
C21 | C6 | C25 | 116.8° | 119.9° |
C6 | C21 | C22 | 121.7° | 119.8° |
C6 | C21 | O30 | 118.0° | 120.1° |
C6 | C25 | C24 | 120.8° | 119.9° |
C6 | C25 | H25 | 119.6° | 120.0° |
C12 | C7 | C16 | 118.6° | 119.9° |
C7 | C12 | C13 | 120.2° | 119.9° |
C7 | C12 | H12 | 119.9° | 120.0° |
C7 | C16 | C15 | 121.5° | 119.9° |
C7 | C16 | H16 | 119.3° | 120.1° |
C12 | C13 | C14 | 120.1° | 120.0° |
C12 | C13 | OAN | 118.9° | 120.0° |
C13 | C12 | H12 | 119.9° | 120.1° |
C14 | C13 | OAN | 121.0° | 120.0° |
C13 | C14 | C15 | 119.4° | 120.2° |
C13 | C14 | O33 | 123.0° | 120.0° |
C13 | OAN | CAB | 113.2° | 117.0° |
C15 | C14 | O33 | 117.6° | 119.9° |
C14 | C15 | C16 | 119.7° | 120.2° |
C14 | C15 | H15 | 120.1° | 119.9° |
C14 | O33 | C34 | 110.3° | 117.0° |
C15 | C16 | H16 | 119.3° | 120.0° |
C16 | C15 | H15 | 120.2° | 119.9° |
C22 | C21 | O30 | 119.0° | 120.1° |
C21 | C22 | C23 | 120.1° | 120.0° |
C21 | C22 | H22 | 119.9° | 120.0° |
C21 | O30 | H30 | 109.5° | 114.0° |
C22 | C23 | C24 | 118.5° | 120.2° |
C22 | C23 | O29 | 120.8° | 119.9° |
C23 | C22 | H22 | 119.9° | 120.0° |
C24 | C23 | O29 | 120.8° | 119.9° |
C23 | C24 | C25 | 120.8° | 120.1° |
C23 | C24 | CL | 118.3° | 119.9° |
C23 | O29 | H29 | 109.5° | 114.0° |
C25 | C24 | CL | 120.9° | 119.9° |
C24 | C25 | H25 | 119.6° | 120.0° |
O33 | C34 | H341 | 109.5° | 109.5° |
O33 | C34 | H342 | 109.5° | 109.5° |
O33 | C34 | H343 | 109.4° | 109.4° |
OAN | CAB | HAB1 | 109.5° | 109.5° |
OAN | CAB | HAB2 | 109.5° | 109.5° |
OAN | CAB | HAB3 | 109.5° | 109.5° |
H341 | C34 | H342 | 109.4° | 109.5° |
H341 | C34 | H343 | 109.5° | 109.5° |
H342 | C34 | H343 | 109.5° | 109.5° |
HAB1 | CAB | HAB2 | 109.5° | 109.5° |
HAB1 | CAB | HAB3 | 109.5° | 109.5° |
HAB2 | CAB | HAB3 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N1 | N2 | C3 | C4 | 14.7° | 0.0° |
N1 | N2 | C3 | C6 | 171.7° | 179.9° |
N2 | N1 | S1 | C4 | 5.2° | 0.0° |
S1 | N1 | N2 | C3 | 4.7° | 0.0° |
N1 | S1 | C4 | C3 | 12.6° | 0.0° |
N1 | S1 | C4 | C7 | 170.5° | 180.0° |
N2 | C3 | C4 | C6 | 156.8° | 180.0° |
N2 | C3 | C4 | C7 | 172.6° | 180.0° |
N2 | C3 | C4 | S1 | 16.8° | 0.0° |
N2 | C3 | C6 | C21 | 51.8° | 66.5° |
N2 | C3 | C6 | C25 | 112.1° | 113.3° |
C3 | C4 | C7 | S1 | 152.7° | 180.0° |
C4 | C3 | C6 | C21 | 154.3° | 113.6° |
C4 | C3 | C6 | C25 | 41.8° | 66.7° |
C3 | C4 | C7 | C12 | 167.1° | 173.5° |
C3 | C4 | C7 | C16 | 24.3° | 6.9° |
C6 | C3 | C4 | C7 | 30.5° | 0.0° |
C6 | C3 | C4 | S1 | 173.6° | 180.0° |
C3 | C6 | C21 | C25 | 164.3° | 179.8° |
C3 | C6 | C21 | C22 | 178.8° | 180.0° |
C3 | C6 | C21 | O30 | 14.5° | 0.0° |
C3 | C6 | C25 | C24 | 175.5° | 179.7° |
C3 | C6 | C25 | H25 | 4.6° | 0.1° |
C4 | C7 | C12 | C16 | 168.4° | 179.7° |
C4 | C7 | C12 | C13 | 176.9° | 180.0° |
C4 | C7 | C16 | C15 | 176.5° | 179.7° |
C4 | C7 | C12 | H12 | 3.1° | 0.1° |
C4 | C7 | C16 | H16 | 3.5° | 0.1° |
S1 | C4 | C7 | C12 | 40.2° | 6.5° |
S1 | C4 | C7 | C16 | 128.3° | 173.1° |
C6 | C21 | C22 | O30 | 166.6° | 180.0° |
C6 | C21 | C22 | C23 | 10.8° | 0.0° |
C21 | C6 | C25 | C24 | 10.8° | 0.6° |
C21 | C6 | C25 | H25 | 169.3° | 179.7° |
C6 | C21 | C22 | H22 | 169.1° | 180.0° |
C6 | C21 | O30 | H30 | 152.9° | 90.0° |
C25 | C6 | C21 | C22 | 14.5° | 0.3° |
C25 | C6 | C21 | O30 | 178.8° | 179.7° |
C6 | C25 | C24 | C23 | 3.5° | 0.6° |
C6 | C25 | C24 | H25 | 180.0° | 179.7° |
C6 | C25 | C24 | CL | 177.0° | 179.7° |
C7 | C12 | C13 | H12 | 180.0° | 180.0° |
C7 | C12 | C13 | C14 | 5.7° | 0.1° |
C7 | C12 | C13 | OAN | 175.6° | 180.0° |
C12 | C7 | C16 | C15 | 7.4° | 0.6° |
C12 | C7 | C16 | H16 | 172.6° | 179.7° |
C16 | C7 | C12 | C13 | 8.5° | 0.3° |
C7 | C16 | C15 | C14 | 3.3° | 0.6° |
C7 | C16 | C15 | H16 | 180.0° | 179.6° |
C16 | C7 | C12 | H12 | 171.5° | 179.7° |
C7 | C16 | C15 | H15 | 176.8° | 179.7° |
C12 | C13 | C14 | OAN | 178.7° | 179.9° |
C12 | C13 | C14 | C15 | 1.5° | 0.1° |
C12 | C13 | C14 | O33 | 178.1° | 179.9° |
C12 | C13 | OAN | CAB | 22.9° | 0.0° |
C13 | C14 | C15 | O33 | 179.6° | 180.0° |
C13 | C14 | C15 | C16 | 0.2° | 0.3° |
C13 | C14 | O33 | C34 | 33.7° | 179.9° |
C14 | C13 | OAN | CAB | 155.8° | 179.9° |
C14 | C13 | C12 | H12 | 174.3° | 179.9° |
C13 | C14 | C15 | H15 | 179.8° | 180.0° |
OAN | C13 | C14 | C15 | 179.9° | 180.0° |
OAN | C13 | C14 | O33 | 0.6° | 0.0° |
OAN | C13 | C12 | H12 | 4.4° | 0.0° |
C13 | OAN | CAB | HAB1 | 56.8° | 180.0° |
C13 | OAN | CAB | HAB2 | 63.2° | 60.0° |
C13 | OAN | CAB | HAB3 | 176.8° | 60.0° |
C14 | C15 | C16 | H15 | 180.0° | 179.7° |
C15 | C14 | O33 | C34 | 145.9° | 0.0° |
C14 | C15 | C16 | H16 | 176.7° | 179.7° |
O33 | C14 | C15 | C16 | 179.4° | 179.7° |
O33 | C14 | C15 | H15 | 0.6° | 0.0° |
C14 | O33 | C34 | H341 | 11.3° | 180.0° |
C14 | O33 | C34 | H342 | 108.7° | 60.0° |
C14 | O33 | C34 | H343 | 131.3° | 60.0° |
C21 | C22 | C23 | H22 | 180.0° | 180.0° |
C21 | C22 | C23 | C24 | 2.9° | 0.0° |
C21 | C22 | C23 | O29 | 176.9° | 180.0° |
C22 | C21 | O30 | H30 | 14.2° | 90.0° |
O30 | C21 | C22 | C23 | 177.4° | 180.0° |
O30 | C21 | C22 | H22 | 2.6° | 0.0° |
C22 | C23 | C24 | O29 | 179.7° | 180.0° |
C22 | C23 | C24 | C25 | 0.7° | 0.3° |
C22 | C23 | C24 | CL | 178.8° | 180.0° |
C22 | C23 | O29 | H29 | 94.1° | 89.9° |
C23 | C24 | C25 | CL | 179.5° | 179.7° |
C23 | C24 | C25 | H25 | 176.6° | 179.7° |
C24 | C23 | C22 | H22 | 177.1° | 180.0° |
C24 | C23 | O29 | H29 | 86.2° | 90.1° |
O29 | C23 | C24 | C25 | 179.6° | 179.7° |
O29 | C23 | C24 | CL | 0.9° | 0.0° |
O29 | C23 | C22 | H22 | 3.2° | 0.1° |
CL | C24 | C25 | H25 | 2.9° | 0.0° |
O33 | C34 | H341 | H342 | 120.0° | 120.0° |
O33 | C34 | H341 | H343 | 120.0° | 119.9° |
O33 | C34 | H342 | H343 | 120.0° | 119.9° |
OAN | CAB | HAB1 | HAB2 | 120.0° | 120.1° |
OAN | CAB | HAB1 | HAB3 | 120.0° | 120.0° |
OAN | CAB | HAB2 | HAB3 | 120.0° | 120.0° |
H16 | C16 | C15 | H15 | 3.3° | 0.0° |
H341 | C34 | H342 | H343 | 120.0° | 120.1° |
HAB1 | CAB | HAB2 | HAB3 | 120.0° | 120.0° |