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YI5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1N2doub1.27Å1.25ÅAromatic
N1S1sing1.57Å1.67ÅAromatic
N2C3sing1.32Å1.36ÅAromatic
C3C4doub1.39Å1.41ÅAromatic
C3C6sing1.48Å1.41ÅAromatic
C4C7sing1.48Å1.39ÅAromatic
C4S1sing1.77Å1.69ÅAromatic
C6C21sing1.40Å1.40ÅAromatic
C6C25doub1.39Å1.40ÅAromatic
C7C12sing1.40Å1.39ÅAromatic
C7C16doub1.40Å1.39ÅAromatic
C12C13doub1.38Å1.40ÅAromatic
C13C14sing1.39Å1.40ÅAromatic
C13OANsing1.36Å1.36Å
C14C15doub1.39Å1.39ÅAromatic
C14O33sing1.36Å1.36Å
C15C16sing1.38Å1.38ÅAromatic
C21C22doub1.38Å1.40ÅAromatic
C21O30sing1.36Å1.35Å
C22C23sing1.39Å1.39ÅAromatic
C23C24doub1.39Å1.40ÅAromatic
C23O29sing1.36Å1.37Å
C24C25sing1.38Å1.41ÅAromatic
C24CLsing1.74Å1.74Å
O33C34sing1.43Å1.44Å
CABOANsing1.43Å1.45Å
C25H25sing1.08Å1.08Å
C12H12sing1.08Å1.08Å
C16H16sing1.08Å1.08Å
C15H15sing1.08Å1.08Å
C22H22sing1.08Å1.08Å
O30H30sing0.97Å0.95Å
O29H29sing0.97Å0.95Å
C34H341sing1.09Å1.10Å
C34H342sing1.09Å1.10Å
C34H343sing1.09Å1.10Å
CABHAB1sing1.09Å1.10Å
CABHAB2sing1.09Å1.10Å
CABHAB3sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N2N1S1110.0°110.0°
N1N2C3118.0°119.9°
N1S1C493.3°95.4°
N2C3C4109.9°111.5°
N2C3C6122.6°124.2°
C4C3C6123.1°124.3°
C3C4C7128.1°128.4°
C3C4S1106.2°103.1°
C3C6C21121.9°120.0°
C3C6C25119.5°120.1°
C7C4S1121.2°128.4°
C4C7C12123.1°120.1°
C4C7C16117.3°120.0°
C21C6C25116.8°119.9°
C6C21C22121.7°119.8°
C6C21O30118.0°120.1°
C6C25C24120.8°119.9°
C6C25H25119.6°120.0°
C12C7C16118.6°119.9°
C7C12C13120.2°119.9°
C7C12H12119.9°120.0°
C7C16C15121.5°119.9°
C7C16H16119.3°120.1°
C12C13C14120.1°120.0°
C12C13OAN118.9°120.0°
C13C12H12119.9°120.1°
C14C13OAN121.0°120.0°
C13C14C15119.4°120.2°
C13C14O33123.0°120.0°
C13OANCAB113.2°117.0°
C15C14O33117.6°119.9°
C14C15C16119.7°120.2°
C14C15H15120.1°119.9°
C14O33C34110.3°117.0°
C15C16H16119.3°120.0°
C16C15H15120.2°119.9°
C22C21O30119.0°120.1°
C21C22C23120.1°120.0°
C21C22H22119.9°120.0°
C21O30H30109.5°114.0°
C22C23C24118.5°120.2°
C22C23O29120.8°119.9°
C23C22H22119.9°120.0°
C24C23O29120.8°119.9°
C23C24C25120.8°120.1°
C23C24CL118.3°119.9°
C23O29H29109.5°114.0°
C25C24CL120.9°119.9°
C24C25H25119.6°120.0°
O33C34H341109.5°109.5°
O33C34H342109.5°109.5°
O33C34H343109.4°109.4°
OANCABHAB1109.5°109.5°
OANCABHAB2109.5°109.5°
OANCABHAB3109.5°109.5°
H341C34H342109.4°109.5°
H341C34H343109.5°109.5°
H342C34H343109.5°109.5°
HAB1CABHAB2109.5°109.5°
HAB1CABHAB3109.5°109.5°
HAB2CABHAB3109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1N2C3C414.7°0.0°
N1N2C3C6171.7°179.9°
N2N1S1C45.2°0.0°
S1N1N2C34.7°0.0°
N1S1C4C312.6°0.0°
N1S1C4C7170.5°180.0°
N2C3C4C6156.8°180.0°
N2C3C4C7172.6°180.0°
N2C3C4S116.8°0.0°
N2C3C6C2151.8°66.5°
N2C3C6C25112.1°113.3°
C3C4C7S1152.7°180.0°
C4C3C6C21154.3°113.6°
C4C3C6C2541.8°66.7°
C3C4C7C12167.1°173.5°
C3C4C7C1624.3°6.9°
C6C3C4C730.5°0.0°
C6C3C4S1173.6°180.0°
C3C6C21C25164.3°179.8°
C3C6C21C22178.8°180.0°
C3C6C21O3014.5°0.0°
C3C6C25C24175.5°179.7°
C3C6C25H254.6°0.1°
C4C7C12C16168.4°179.7°
C4C7C12C13176.9°180.0°
C4C7C16C15176.5°179.7°
C4C7C12H123.1°0.1°
C4C7C16H163.5°0.1°
S1C4C7C1240.2°6.5°
S1C4C7C16128.3°173.1°
C6C21C22O30166.6°180.0°
C6C21C22C2310.8°0.0°
C21C6C25C2410.8°0.6°
C21C6C25H25169.3°179.7°
C6C21C22H22169.1°180.0°
C6C21O30H30152.9°90.0°
C25C6C21C2214.5°0.3°
C25C6C21O30178.8°179.7°
C6C25C24C233.5°0.6°
C6C25C24H25180.0°179.7°
C6C25C24CL177.0°179.7°
C7C12C13H12180.0°180.0°
C7C12C13C145.7°0.1°
C7C12C13OAN175.6°180.0°
C12C7C16C157.4°0.6°
C12C7C16H16172.6°179.7°
C16C7C12C138.5°0.3°
C7C16C15C143.3°0.6°
C7C16C15H16180.0°179.6°
C16C7C12H12171.5°179.7°
C7C16C15H15176.8°179.7°
C12C13C14OAN178.7°179.9°
C12C13C14C151.5°0.1°
C12C13C14O33178.1°179.9°
C12C13OANCAB22.9°0.0°
C13C14C15O33179.6°180.0°
C13C14C15C160.2°0.3°
C13C14O33C3433.7°179.9°
C14C13OANCAB155.8°179.9°
C14C13C12H12174.3°179.9°
C13C14C15H15179.8°180.0°
OANC13C14C15179.9°180.0°
OANC13C14O330.6°0.0°
OANC13C12H124.4°0.0°
C13OANCABHAB156.8°180.0°
C13OANCABHAB263.2°60.0°
C13OANCABHAB3176.8°60.0°
C14C15C16H15180.0°179.7°
C15C14O33C34145.9°0.0°
C14C15C16H16176.7°179.7°
O33C14C15C16179.4°179.7°
O33C14C15H150.6°0.0°
C14O33C34H34111.3°180.0°
C14O33C34H342108.7°60.0°
C14O33C34H343131.3°60.0°
C21C22C23H22180.0°180.0°
C21C22C23C242.9°0.0°
C21C22C23O29176.9°180.0°
C22C21O30H3014.2°90.0°
O30C21C22C23177.4°180.0°
O30C21C22H222.6°0.0°
C22C23C24O29179.7°180.0°
C22C23C24C250.7°0.3°
C22C23C24CL178.8°180.0°
C22C23O29H2994.1°89.9°
C23C24C25CL179.5°179.7°
C23C24C25H25176.6°179.7°
C24C23C22H22177.1°180.0°
C24C23O29H2986.2°90.1°
O29C23C24C25179.6°179.7°
O29C23C24CL0.9°0.0°
O29C23C22H223.2°0.1°
CLC24C25H252.9°0.0°
O33C34H341H342120.0°120.0°
O33C34H341H343120.0°119.9°
O33C34H342H343120.0°119.9°
OANCABHAB1HAB2120.0°120.1°
OANCABHAB1HAB3120.0°120.0°
OANCABHAB2HAB3120.0°120.0°
H16C16C15H153.3°0.0°
H341C34H342H343120.0°120.1°
HAB1CABHAB2HAB3120.0°120.0°

222415

PDB entries from 2024-07-10

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